Wall clock time and date at job start Mon Mar 30 2020 06:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47337 * 2 1 4 4 C 1.53001 * 109.46877 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.56644 * 305.52095 * 4 3 2 6 6 C 1.54478 * 110.51226 * 68.20909 * 4 3 2 7 7 O 1.44421 * 104.80405 * 142.62172 * 6 4 3 8 8 C 1.44647 * 105.37096 * 319.56335 * 7 6 4 9 9 C 1.54483 * 104.69331 * 40.34735 * 8 7 6 10 10 H 1.08994 * 110.50961 * 94.90235 * 9 8 7 11 11 N 1.46900 * 110.50801 * 217.47618 * 9 8 7 12 12 C 1.46902 * 111.00264 * 320.74942 * 11 9 8 13 13 C 1.46896 * 110.99920 * 196.79179 * 11 9 8 14 14 C 1.53000 * 109.47521 * 190.00244 * 13 11 9 15 15 C 1.52993 * 109.47504 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47572 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99656 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00380 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00163 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00093 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47125 * 60.00053 * 20 18 16 22 22 H 1.48507 * 109.47322 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47551 * 299.99962 * 20 18 16 24 24 H 1.09007 * 109.46955 * 299.99559 * 1 2 3 25 25 H 1.08993 * 109.47235 * 59.99882 * 1 2 3 26 26 H 1.08998 * 109.47346 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47438 * 239.99853 * 2 1 3 28 28 H 1.09006 * 109.47424 * 120.00166 * 2 1 3 29 29 H 1.08998 * 109.46865 * 60.00440 * 3 2 1 30 30 H 1.08993 * 109.47055 * 300.00229 * 3 2 1 31 31 H 1.09003 * 110.36557 * 261.44780 * 6 4 3 32 32 H 1.08999 * 110.37307 * 23.67619 * 6 4 3 33 33 H 1.08997 * 110.33623 * 281.59495 * 8 7 6 34 34 H 1.08999 * 110.51177 * 159.18500 * 8 7 6 35 35 H 1.08997 * 109.46814 * 295.63936 * 12 11 9 36 36 H 1.08999 * 109.46792 * 55.64190 * 12 11 9 37 37 H 1.08998 * 109.46841 * 175.64047 * 12 11 9 38 38 H 1.09005 * 109.47232 * 70.00340 * 13 11 9 39 39 H 1.08999 * 109.47723 * 310.00655 * 13 11 9 40 40 H 1.08994 * 109.47073 * 60.00210 * 14 13 11 41 41 H 1.09000 * 109.47024 * 300.00095 * 14 13 11 42 42 H 1.08999 * 109.47513 * 300.00272 * 15 14 13 43 43 H 1.09005 * 109.47459 * 59.99967 * 15 14 13 44 44 H 0.97006 * 120.00551 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9532 0.8493 0.8297 6 6 4.1107 0.9054 -1.3444 7 8 5.2791 1.7085 -1.6194 8 6 4.9175 3.0555 -1.2359 9 6 4.1115 2.8877 0.0713 10 1 4.7605 3.0097 0.9384 11 7 3.0033 3.8508 0.1198 12 6 3.4152 5.1549 -0.4164 13 6 2.4814 3.9844 1.4864 14 6 1.1832 4.7936 1.4598 15 6 0.6400 4.9333 2.8832 16 6 -0.6391 5.7297 2.8569 17 1 -1.0257 6.0996 1.9188 18 6 -1.3152 5.9871 4.0306 19 7 -0.8443 5.5371 5.1731 20 14 -2.9003 6.9749 3.9980 21 1 -3.9018 6.2762 3.1529 22 1 -3.4270 7.1115 5.3799 23 1 -2.6322 8.3229 3.4356 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 4.3859 -0.1451 -1.2500 32 1 3.3669 1.0329 -2.1309 33 1 4.2992 3.5156 -2.0065 34 1 5.8105 3.6544 -1.0568 35 1 4.1909 5.5808 0.2201 36 1 3.8042 5.0260 -1.4264 37 1 2.5563 5.8255 -0.4406 38 1 3.2162 4.4969 2.1074 39 1 2.2843 2.9948 1.8986 40 1 0.4484 4.2812 0.8389 41 1 1.3802 5.7832 1.0477 42 1 0.4430 3.9438 3.2958 43 1 1.3749 5.4460 3.5039 44 1 -1.3201 5.7178 5.9989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688225417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:57 Heat of formation + Delta-G solvation = -58.041203 kcal Electronic energy + Delta-G solvation = -20023.871369 eV Core-core repulsion = 17168.710069 eV Total energy + Delta-G solvation = -2855.161300 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.13081 -36.90624 -35.11576 -33.68507 -31.68744 -30.82723 -28.59055 -27.17125 -25.80027 -25.23626 -22.58620 -22.16025 -20.98377 -19.93792 -19.40813 -16.61953 -16.33492 -16.15474 -15.71576 -14.97880 -14.70930 -14.51170 -14.20955 -13.66263 -13.56446 -13.31277 -12.72673 -12.50396 -12.28082 -12.11509 -12.02060 -11.75349 -11.33075 -11.22049 -11.18202 -10.91796 -10.80277 -10.68060 -10.54067 -10.52637 -10.36739 -10.06642 -9.76933 -9.55814 -9.32333 -9.05936 -8.33587 -8.08501 -5.99028 -4.01174 3.33794 3.38128 3.40676 3.79175 4.19035 4.47329 4.52064 4.73790 4.84230 5.10210 5.20779 5.24801 5.30221 5.35486 5.36753 5.41990 5.55821 5.61950 5.68089 5.69905 5.78053 5.79216 5.89213 5.98289 6.00313 6.07807 6.11535 6.13074 6.28587 6.37776 6.52111 6.61924 6.66427 6.68881 6.86492 7.10765 7.32461 7.36090 7.68615 7.83369 8.01157 8.44421 9.05791 9.62845 11.12338 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023926 B = 0.004776 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.980692 B = 5861.028989 C = 6612.005671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.104 4.104 4 C -0.111 4.111 5 H 0.077 0.923 6 C 0.053 3.947 7 O -0.381 6.381 8 C 0.047 3.953 9 C 0.050 3.950 10 H 0.055 0.945 11 N -0.527 5.527 12 C 0.014 3.986 13 C 0.050 3.950 14 C -0.103 4.103 15 C 0.023 3.977 16 C -0.518 4.518 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.023 0.977 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.028 0.972 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.015 0.985 43 H 0.012 0.988 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.406 -8.465 -12.030 17.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.141 4.141 4 C -0.130 4.130 5 H 0.096 0.904 6 C -0.024 4.024 7 O -0.299 6.299 8 C -0.030 4.030 9 C -0.059 4.059 10 H 0.073 0.927 11 N -0.252 5.252 12 C -0.134 4.134 13 C -0.076 4.076 14 C -0.141 4.141 15 C -0.015 4.015 16 C -0.557 4.557 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.046 0.954 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.209 -8.721 -12.228 17.618 hybrid contribution -0.394 0.966 0.806 1.318 sum 8.815 -7.755 -11.422 16.380 Atomic orbital electron populations 1.21752 0.95776 1.01017 1.02424 1.21614 0.96140 0.97612 1.01080 1.21661 0.92271 0.95498 1.04716 1.22554 0.97766 0.94816 0.97902 0.90426 1.23513 0.87525 0.95545 0.95805 1.89114 1.35773 1.18967 1.86074 1.23715 0.98788 0.85074 0.95428 1.23035 0.91822 0.93427 0.97613 0.92738 1.62227 1.30912 1.08473 1.23573 1.22545 1.00525 0.91109 0.99219 1.22506 0.97587 1.01003 0.86528 1.21641 0.93874 0.97731 1.00892 1.19060 0.95520 0.96938 0.89985 1.21200 1.07764 1.33697 0.93014 0.92770 1.25014 0.97738 0.96043 0.95617 1.69956 1.39580 1.46110 0.97958 0.86676 0.83807 0.80668 0.76950 1.20220 1.21318 1.20290 0.92173 0.92804 0.93364 0.92815 0.92553 0.89820 0.90873 0.89581 0.91996 0.90937 0.89483 0.95863 0.91585 0.90411 0.95391 0.90516 0.92556 0.93449 0.96675 0.96936 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 37.15 0.37 -1.39 16 2 C -0.13 -1.40 5.80 -26.73 -0.15 -1.56 16 3 C -0.10 -1.31 3.56 -26.73 -0.10 -1.40 16 4 C -0.11 -1.31 3.01 -89.05 -0.27 -1.58 16 5 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 6 C 0.05 0.58 6.41 37.93 0.24 0.83 16 7 O -0.38 -4.89 11.65 -35.23 -0.41 -5.30 16 8 C 0.05 0.54 6.02 37.94 0.23 0.77 16 9 C 0.05 0.64 2.96 -66.14 -0.20 0.44 16 10 H 0.05 0.72 7.98 -51.93 -0.41 0.30 16 11 N -0.53 -7.42 3.42 -233.00 -0.80 -8.22 16 12 C 0.01 0.18 8.77 60.07 0.53 0.71 16 13 C 0.05 0.85 3.97 -3.83 -0.02 0.83 16 14 C -0.10 -2.09 5.08 -26.73 -0.14 -2.23 16 15 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 16 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 20 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.53 7.55 -51.93 -0.39 0.14 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.24 4.77 -51.93 -0.25 0.99 16 30 H 0.07 0.98 7.84 -51.93 -0.41 0.58 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.67 7.78 -51.93 -0.40 0.26 16 33 H 0.07 0.82 6.35 -51.93 -0.33 0.49 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.71 5.68 -51.93 -0.29 0.42 16 37 H 0.08 1.07 6.49 -51.93 -0.34 0.74 16 38 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 39 H 0.08 1.30 5.69 -51.93 -0.30 1.00 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.95 6.56 -51.93 -0.34 0.61 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -29.59 334.68 -8.57 -38.16 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -8.08 Total: -2.54 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -0.05 Total: -17.58 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: -0.06 Total: -34.44 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.41 Total: -5.30 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.59 -8.57 -38.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688225417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.877 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds