Wall clock time and date at job start Mon Mar 30 2020 06:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47337 * 2 1 4 4 C 1.53001 * 109.46877 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.56644 * 305.52095 * 4 3 2 6 6 C 1.54478 * 110.51226 * 68.20909 * 4 3 2 7 7 O 1.44421 * 104.80405 * 142.62172 * 6 4 3 8 8 C 1.44647 * 105.37096 * 319.56335 * 7 6 4 9 9 C 1.54483 * 104.69331 * 40.34735 * 8 7 6 10 10 H 1.08994 * 110.50961 * 94.90235 * 9 8 7 11 11 N 1.46900 * 110.50801 * 217.47618 * 9 8 7 12 12 C 1.46902 * 111.00264 * 320.74942 * 11 9 8 13 13 C 1.46896 * 110.99920 * 196.79179 * 11 9 8 14 14 C 1.53000 * 109.47521 * 190.00244 * 13 11 9 15 15 C 1.52993 * 109.47504 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47572 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99656 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00380 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00163 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00093 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47125 * 60.00053 * 20 18 16 22 22 H 1.48507 * 109.47322 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47551 * 299.99962 * 20 18 16 24 24 H 1.09007 * 109.46955 * 299.99559 * 1 2 3 25 25 H 1.08993 * 109.47235 * 59.99882 * 1 2 3 26 26 H 1.08998 * 109.47346 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47438 * 239.99853 * 2 1 3 28 28 H 1.09006 * 109.47424 * 120.00166 * 2 1 3 29 29 H 1.08998 * 109.46865 * 60.00440 * 3 2 1 30 30 H 1.08993 * 109.47055 * 300.00229 * 3 2 1 31 31 H 1.09003 * 110.36557 * 261.44780 * 6 4 3 32 32 H 1.08999 * 110.37307 * 23.67619 * 6 4 3 33 33 H 1.08997 * 110.33623 * 281.59495 * 8 7 6 34 34 H 1.08999 * 110.51177 * 159.18500 * 8 7 6 35 35 H 1.08997 * 109.46814 * 295.63936 * 12 11 9 36 36 H 1.08999 * 109.46792 * 55.64190 * 12 11 9 37 37 H 1.08998 * 109.46841 * 175.64047 * 12 11 9 38 38 H 1.09005 * 109.47232 * 70.00340 * 13 11 9 39 39 H 1.08999 * 109.47723 * 310.00655 * 13 11 9 40 40 H 1.08994 * 109.47073 * 60.00210 * 14 13 11 41 41 H 1.09000 * 109.47024 * 300.00095 * 14 13 11 42 42 H 1.08999 * 109.47513 * 300.00272 * 15 14 13 43 43 H 1.09005 * 109.47459 * 59.99967 * 15 14 13 44 44 H 0.97006 * 120.00551 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9532 0.8493 0.8297 6 6 4.1107 0.9054 -1.3444 7 8 5.2791 1.7085 -1.6194 8 6 4.9175 3.0555 -1.2359 9 6 4.1115 2.8877 0.0713 10 1 4.7605 3.0097 0.9384 11 7 3.0033 3.8508 0.1198 12 6 3.4152 5.1549 -0.4164 13 6 2.4814 3.9844 1.4864 14 6 1.1832 4.7936 1.4598 15 6 0.6400 4.9333 2.8832 16 6 -0.6391 5.7297 2.8569 17 1 -1.0257 6.0996 1.9188 18 6 -1.3152 5.9871 4.0306 19 7 -0.8443 5.5371 5.1731 20 14 -2.9003 6.9749 3.9980 21 1 -3.9018 6.2762 3.1529 22 1 -3.4270 7.1115 5.3799 23 1 -2.6322 8.3229 3.4356 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 4.3859 -0.1451 -1.2500 32 1 3.3669 1.0329 -2.1309 33 1 4.2992 3.5156 -2.0065 34 1 5.8105 3.6544 -1.0568 35 1 4.1909 5.5808 0.2201 36 1 3.8042 5.0260 -1.4264 37 1 2.5563 5.8255 -0.4406 38 1 3.2162 4.4969 2.1074 39 1 2.2843 2.9948 1.8986 40 1 0.4484 4.2812 0.8389 41 1 1.3802 5.7832 1.0477 42 1 0.4430 3.9438 3.2958 43 1 1.3749 5.4460 3.5039 44 1 -1.3201 5.7178 5.9989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688225417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:57 Heat of formation + Delta-G solvation = -75.148349 kcal Electronic energy + Delta-G solvation = -20024.613190 eV Core-core repulsion = 17168.710069 eV Total energy + Delta-G solvation = -2855.903122 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.13232 -38.10488 -36.10698 -35.60123 -33.45595 -31.89313 -29.88759 -28.47305 -26.88326 -26.71348 -24.14853 -23.25891 -21.99028 -21.61911 -20.44565 -18.47027 -17.51080 -17.28413 -16.74093 -16.52794 -16.16949 -15.83661 -15.34340 -14.84860 -14.75999 -14.44249 -14.23646 -13.85871 -13.55946 -13.47130 -13.19282 -13.03375 -12.82893 -12.65891 -12.53101 -12.31486 -12.19978 -12.16099 -11.82834 -11.57143 -11.45732 -11.40988 -11.30075 -11.14174 -10.93652 -10.67506 -10.53844 -9.24927 -8.19486 -6.30401 1.40054 1.42940 1.50852 2.41011 2.77246 3.13769 3.15945 3.56605 3.80416 3.88376 4.10715 4.15834 4.27041 4.33385 4.34908 4.41423 4.42838 4.57052 4.62410 4.70174 4.72072 4.78247 4.84182 4.87757 4.95546 4.96545 5.04179 5.08231 5.11426 5.14259 5.20449 5.28669 5.41546 5.51479 5.53568 5.67856 5.74715 5.76699 5.87238 6.07524 6.19376 6.28224 6.86277 7.38873 8.92192 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023926 B = 0.004776 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.980692 B = 5861.028989 C = 6612.005671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.097 4.097 4 C -0.110 4.110 5 H 0.080 0.920 6 C 0.056 3.944 7 O -0.394 6.394 8 C 0.051 3.949 9 C 0.047 3.953 10 H 0.049 0.951 11 N -0.526 5.526 12 C 0.012 3.988 13 C 0.065 3.935 14 C -0.086 4.086 15 C 0.027 3.973 16 C -0.542 4.542 17 H 0.059 0.941 18 C 0.001 3.999 19 N -0.934 5.934 20 Si 0.963 3.037 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.267 1.267 24 H 0.037 0.963 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.025 0.975 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.019 0.981 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.050 0.950 42 H -0.009 1.009 43 H -0.013 1.013 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.506 -8.672 -13.674 18.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.134 4.134 4 C -0.129 4.129 5 H 0.098 0.902 6 C -0.021 4.021 7 O -0.313 6.313 8 C -0.025 4.025 9 C -0.062 4.062 10 H 0.067 0.933 11 N -0.251 5.251 12 C -0.136 4.136 13 C -0.063 4.063 14 C -0.123 4.123 15 C -0.010 4.010 16 C -0.579 4.579 17 H 0.077 0.923 18 C -0.197 4.197 19 N -0.574 5.574 20 Si 0.787 3.213 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.192 1.192 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.044 0.956 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.038 0.962 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.009 0.991 43 H 0.005 0.995 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.319 -8.930 -13.892 18.963 hybrid contribution -0.401 1.009 1.323 1.711 sum 8.918 -7.921 -12.569 17.328 Atomic orbital electron populations 1.21756 0.96310 1.01643 1.01322 1.21587 0.95623 0.96698 1.02107 1.21524 0.92860 0.96173 1.02854 1.22549 0.97079 0.94464 0.98821 0.90170 1.23578 0.87197 0.96234 0.95068 1.89108 1.36547 1.19510 1.86129 1.23736 0.99238 0.84986 0.94561 1.23102 0.91353 0.93418 0.98341 0.93277 1.62151 1.32058 1.09543 1.21313 1.22612 1.00184 0.90179 1.00595 1.22191 0.95776 0.99998 0.88286 1.21352 0.95339 0.98514 0.97144 1.18950 0.94535 0.94832 0.92714 1.21644 1.08817 1.34080 0.93408 0.92308 1.25957 1.01505 0.97100 0.95133 1.70091 1.41264 1.47362 0.98688 0.85536 0.79214 0.79273 0.77249 1.19164 1.20830 1.19187 0.94368 0.92794 0.91892 0.90859 0.92333 0.92543 0.91713 0.87834 0.91496 0.90380 0.88110 0.95638 0.89054 0.91541 0.96237 0.90824 0.92846 0.93167 0.99103 0.99461 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.91 71.98 0.71 -2.72 16 2 C -0.12 -2.55 5.80 30.59 0.18 -2.37 16 3 C -0.10 -2.36 3.56 30.59 0.11 -2.25 16 4 C -0.11 -2.44 3.01 -9.78 -0.03 -2.47 16 5 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 6 C 0.06 1.09 6.41 72.48 0.46 1.56 16 7 O -0.39 -9.14 11.65 -148.98 -1.74 -10.88 16 8 C 0.05 1.07 6.02 72.49 0.44 1.50 16 9 C 0.05 1.12 2.96 45.93 0.14 1.26 16 10 H 0.05 1.25 7.98 -2.39 -0.02 1.23 16 11 N -0.53 -14.41 3.42 -891.07 -3.05 -17.45 16 12 C 0.01 0.29 8.77 127.69 1.12 1.41 16 13 C 0.06 2.22 3.97 86.30 0.34 2.56 16 14 C -0.09 -3.53 5.08 30.59 0.16 -3.37 16 15 C 0.03 1.45 4.97 29.85 0.15 1.60 16 16 C -0.54 -31.10 9.11 25.60 0.23 -30.87 16 17 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 18 C 0.00 0.04 5.46 84.65 0.46 0.50 16 19 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 20 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.26 7.55 -2.38 -0.02 1.24 16 28 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.06 1.70 4.77 -2.39 -0.01 1.69 16 30 H 0.06 1.68 7.84 -2.39 -0.02 1.66 16 31 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 1.26 7.78 -2.39 -0.02 1.24 16 33 H 0.08 1.54 6.35 -2.39 -0.02 1.53 16 34 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 1.76 5.68 -2.39 -0.01 1.74 16 37 H 0.07 1.77 6.49 -2.39 -0.02 1.75 16 38 H 0.02 0.69 8.12 -2.38 -0.02 0.67 16 39 H 0.07 2.57 5.69 -2.39 -0.01 2.56 16 40 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.05 2.03 6.56 -2.39 -0.02 2.01 16 42 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 44 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -63.60 334.68 2.93 -60.67 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.94 Total: 11.81 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 4.47 Total: -33.67 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -2.76 Total: -74.42 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -1.74 Total: -10.88 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -63.60 2.93 -60.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688225417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.480 kcal (2) G-P(sol) polarization free energy of solvation -63.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds