Wall clock time and date at job start Mon Mar 30 2020 06:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46964 * 2 1 4 4 C 1.52996 * 109.47226 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.56772 * 307.68024 * 4 3 2 6 6 C 1.54480 * 110.50997 * 70.35778 * 4 3 2 7 7 O 1.44428 * 104.80150 * 94.66776 * 6 4 3 8 8 C 1.44413 * 105.27706 * 40.51194 * 7 6 4 9 9 C 1.54485 * 104.80617 * 319.48808 * 8 7 6 10 10 H 1.08999 * 110.51274 * 265.20164 * 9 8 7 11 11 N 1.46892 * 110.51292 * 142.62377 * 9 8 7 12 12 C 1.46900 * 111.00201 * 56.55643 * 11 9 8 13 13 C 1.46906 * 110.99843 * 180.51263 * 11 9 8 14 14 C 1.53000 * 109.46958 * 170.00105 * 13 11 9 15 15 C 1.53001 * 109.47006 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47249 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00217 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00476 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00443 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99641 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47088 * 90.00492 * 20 18 16 22 22 H 1.48498 * 109.47456 * 210.00348 * 20 18 16 23 23 H 1.48499 * 109.47362 * 330.00613 * 20 18 16 24 24 H 1.09003 * 109.47151 * 60.00160 * 1 2 3 25 25 H 1.09006 * 109.46660 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47469 * 299.99961 * 1 2 3 27 27 H 1.09000 * 109.47469 * 240.00039 * 2 1 3 28 28 H 1.08998 * 109.47551 * 119.99617 * 2 1 3 29 29 H 1.09000 * 109.46996 * 59.99749 * 3 2 1 30 30 H 1.09003 * 109.47056 * 299.99898 * 3 2 1 31 31 H 1.09003 * 110.37052 * 335.83497 * 6 4 3 32 32 H 1.09002 * 110.46811 * 213.54272 * 6 4 3 33 33 H 1.08997 * 110.37639 * 200.65775 * 8 7 6 34 34 H 1.09002 * 110.37714 * 78.31859 * 8 7 6 35 35 H 1.09002 * 109.47366 * 187.70579 * 12 11 9 36 36 H 1.09008 * 109.46550 * 67.71139 * 12 11 9 37 37 H 1.09000 * 109.47143 * 307.71201 * 12 11 9 38 38 H 1.08998 * 109.46915 * 289.99638 * 13 11 9 39 39 H 1.08996 * 109.47166 * 49.99782 * 13 11 9 40 40 H 1.09000 * 109.47442 * 299.99536 * 14 13 11 41 41 H 1.08996 * 109.47446 * 59.99849 * 14 13 11 42 42 H 1.08996 * 109.47585 * 299.99980 * 15 14 13 43 43 H 1.09008 * 109.46801 * 60.00253 * 15 14 13 44 44 H 0.97006 * 119.99880 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9526 0.8190 0.8086 6 6 4.1118 0.9561 -1.3617 7 8 4.3478 2.1640 -2.1176 8 6 4.9161 3.0982 -1.1744 9 6 4.1113 2.8843 0.1268 10 1 3.2903 3.5985 0.1899 11 7 4.9875 3.0044 1.2996 12 6 5.6715 4.3043 1.3150 13 6 4.2349 2.7907 2.5431 14 6 5.2104 2.6750 3.7161 15 6 4.4266 2.4531 5.0112 16 6 5.3874 2.3385 6.1665 17 1 6.4507 2.4166 5.9944 18 6 4.9090 2.1340 7.4433 19 7 5.7475 2.0345 8.4517 20 14 3.0699 1.9996 7.7413 21 1 2.6520 0.5794 7.6246 22 1 2.7512 2.4990 9.1030 23 1 2.3443 2.8135 6.7331 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.3718 0.3328 -1.8637 32 1 5.0425 0.4050 -1.2270 33 1 4.7940 4.1205 -1.5323 34 1 5.9705 2.8766 -1.0091 35 1 6.4135 4.3151 2.1134 36 1 4.9423 5.0964 1.4859 37 1 6.1659 4.4661 0.3571 38 1 3.5635 3.6328 2.7106 39 1 3.6531 1.8725 2.4624 40 1 5.8819 1.8329 3.5486 41 1 5.7922 3.5931 3.7967 42 1 3.7554 3.2954 5.1786 43 1 3.8445 1.5350 4.9308 44 1 5.4109 1.8909 9.3500 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688225421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:00 Heat of formation + Delta-G solvation = -66.918470 kcal Electronic energy + Delta-G solvation = -19769.053066 eV Core-core repulsion = 16913.506819 eV Total energy + Delta-G solvation = -2855.546247 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.13075 -36.95986 -35.40182 -33.72668 -31.79454 -31.04290 -28.83352 -27.31561 -26.21457 -25.25939 -22.72943 -22.12540 -20.53597 -20.04655 -19.88217 -16.87599 -16.69197 -16.34016 -15.51020 -15.14933 -14.77768 -14.59256 -14.12973 -13.81147 -13.62070 -13.43069 -12.88242 -12.74883 -12.63737 -12.25082 -12.17010 -11.95526 -11.53227 -11.52179 -11.32317 -11.14335 -11.09932 -10.83528 -10.74594 -10.53201 -10.44638 -9.90879 -9.81557 -9.67967 -9.56213 -9.16707 -8.53123 -8.21606 -6.03499 -4.01159 3.30182 3.37577 3.40982 3.75174 4.08571 4.36402 4.45458 4.67751 4.73224 4.91193 4.94416 5.14299 5.16739 5.28010 5.30203 5.33177 5.44827 5.48215 5.54293 5.61072 5.67970 5.69362 5.70731 5.74696 5.80751 5.87415 5.92667 6.00446 6.05009 6.13955 6.15539 6.25464 6.51546 6.53811 6.67153 6.90796 7.20284 7.23119 7.35362 7.46477 7.80997 8.55792 9.02132 9.59237 11.10108 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.019634 B = 0.005047 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.779938 B = 5547.026553 C = 6645.042809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.118 4.118 5 H 0.098 0.902 6 C 0.052 3.948 7 O -0.378 6.378 8 C 0.052 3.948 9 C 0.053 3.947 10 H 0.053 0.947 11 N -0.532 5.532 12 C 0.019 3.981 13 C 0.052 3.948 14 C -0.097 4.097 15 C -0.013 4.013 16 C -0.518 4.518 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.905 5.905 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.267 1.267 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.024 0.976 37 H 0.062 0.938 38 H 0.028 0.972 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.012 0.988 43 H 0.010 0.990 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.993 -0.281 -20.202 21.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.137 4.137 5 H 0.117 0.883 6 C -0.025 4.025 7 O -0.296 6.296 8 C -0.025 4.025 9 C -0.056 4.056 10 H 0.070 0.930 11 N -0.257 5.257 12 C -0.129 4.129 13 C -0.075 4.075 14 C -0.135 4.135 15 C -0.051 4.051 16 C -0.556 4.556 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.544 5.544 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.191 1.191 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.043 0.957 37 H 0.081 0.919 38 H 0.046 0.954 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.031 0.969 43 H 0.029 0.971 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.674 -0.630 -20.281 21.360 hybrid contribution -1.500 0.557 0.724 1.756 sum -8.173 -0.073 -19.557 21.196 Atomic orbital electron populations 1.21768 0.95907 1.01533 1.01766 1.21579 0.95861 0.96736 1.02171 1.21659 0.93818 0.97138 1.02257 1.22621 0.95811 0.96332 0.98910 0.88345 1.23494 1.00062 0.87939 0.90987 1.89090 1.83280 1.24017 1.33228 1.23491 0.97684 0.93767 0.87582 1.23063 0.94522 0.96548 0.91481 0.92952 1.62178 1.29896 1.31660 1.01972 1.22461 0.98898 0.88982 1.02527 1.22380 0.96036 1.00226 0.88853 1.21467 0.97585 1.01529 0.92903 1.19546 0.96270 0.95925 0.93322 1.21140 0.94690 1.49214 0.90542 0.91036 1.25034 0.97624 0.94719 0.96154 1.69920 1.34396 1.50372 0.99687 0.86784 0.86401 0.78703 0.77411 1.20295 1.21419 1.19125 0.92914 0.92814 0.92672 0.92005 0.91646 0.91698 0.91720 0.89175 0.92051 0.89564 0.91061 0.90295 0.95744 0.91877 0.95364 0.91028 0.92019 0.92806 0.96937 0.97149 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.13 -1.17 5.80 -26.73 -0.15 -1.32 16 3 C -0.11 -1.14 4.46 -26.73 -0.12 -1.26 16 4 C -0.12 -1.33 2.13 -89.05 -0.19 -1.52 16 5 H 0.10 1.24 6.90 -51.93 -0.36 0.88 16 6 C 0.05 0.56 7.04 37.93 0.27 0.82 16 7 O -0.38 -4.70 11.65 -35.23 -0.41 -5.11 16 8 C 0.05 0.59 5.90 37.94 0.22 0.81 16 9 C 0.05 0.64 2.48 -66.15 -0.16 0.48 16 10 H 0.05 0.65 7.74 -51.93 -0.40 0.25 16 11 N -0.53 -7.44 4.54 -232.99 -1.06 -8.49 16 12 C 0.02 0.25 9.05 60.06 0.54 0.79 16 13 C 0.05 0.84 4.76 -3.82 -0.02 0.82 16 14 C -0.10 -1.92 5.07 -26.73 -0.14 -2.05 16 15 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 16 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 17 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 20 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.52 6.73 -51.93 -0.35 0.17 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.09 0.84 6.48 -51.93 -0.34 0.50 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.81 7.57 -51.93 -0.39 0.42 16 35 H 0.08 1.08 6.65 -51.93 -0.35 0.73 16 36 H 0.02 0.30 8.10 -51.92 -0.42 -0.12 16 37 H 0.06 0.67 6.49 -51.93 -0.34 0.33 16 38 H 0.03 0.46 8.09 -51.93 -0.42 0.04 16 39 H 0.07 1.13 6.48 -51.93 -0.34 0.80 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.05 1.07 6.63 -51.93 -0.34 0.72 16 42 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 43 H 0.01 0.24 7.57 -51.92 -0.39 -0.15 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 336.34 15.07 5.07 5.07 Total: -1.00 -30.59 336.34 -8.42 -39.01 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -8.20 Total: -3.12 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 0.08 Total: -17.19 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.28 Total: -35.84 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.41 Total: -5.11 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.59 -8.42 -39.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688225421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.913 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds