Wall clock time and date at job start Mon Mar 30 2020 06:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46964 * 2 1 4 4 C 1.52996 * 109.47226 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.56772 * 307.68024 * 4 3 2 6 6 C 1.54480 * 110.50997 * 70.35778 * 4 3 2 7 7 O 1.44428 * 104.80150 * 94.66776 * 6 4 3 8 8 C 1.44413 * 105.27706 * 40.51194 * 7 6 4 9 9 C 1.54485 * 104.80617 * 319.48808 * 8 7 6 10 10 H 1.08999 * 110.51274 * 265.20164 * 9 8 7 11 11 N 1.46892 * 110.51292 * 142.62377 * 9 8 7 12 12 C 1.46900 * 111.00201 * 56.55643 * 11 9 8 13 13 C 1.46906 * 110.99843 * 180.51263 * 11 9 8 14 14 C 1.53000 * 109.46958 * 170.00105 * 13 11 9 15 15 C 1.53001 * 109.47006 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47249 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00217 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00476 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00443 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99641 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47088 * 90.00492 * 20 18 16 22 22 H 1.48498 * 109.47456 * 210.00348 * 20 18 16 23 23 H 1.48499 * 109.47362 * 330.00613 * 20 18 16 24 24 H 1.09003 * 109.47151 * 60.00160 * 1 2 3 25 25 H 1.09006 * 109.46660 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47469 * 299.99961 * 1 2 3 27 27 H 1.09000 * 109.47469 * 240.00039 * 2 1 3 28 28 H 1.08998 * 109.47551 * 119.99617 * 2 1 3 29 29 H 1.09000 * 109.46996 * 59.99749 * 3 2 1 30 30 H 1.09003 * 109.47056 * 299.99898 * 3 2 1 31 31 H 1.09003 * 110.37052 * 335.83497 * 6 4 3 32 32 H 1.09002 * 110.46811 * 213.54272 * 6 4 3 33 33 H 1.08997 * 110.37639 * 200.65775 * 8 7 6 34 34 H 1.09002 * 110.37714 * 78.31859 * 8 7 6 35 35 H 1.09002 * 109.47366 * 187.70579 * 12 11 9 36 36 H 1.09008 * 109.46550 * 67.71139 * 12 11 9 37 37 H 1.09000 * 109.47143 * 307.71201 * 12 11 9 38 38 H 1.08998 * 109.46915 * 289.99638 * 13 11 9 39 39 H 1.08996 * 109.47166 * 49.99782 * 13 11 9 40 40 H 1.09000 * 109.47442 * 299.99536 * 14 13 11 41 41 H 1.08996 * 109.47446 * 59.99849 * 14 13 11 42 42 H 1.08996 * 109.47585 * 299.99980 * 15 14 13 43 43 H 1.09008 * 109.46801 * 60.00253 * 15 14 13 44 44 H 0.97006 * 119.99880 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9526 0.8190 0.8086 6 6 4.1118 0.9561 -1.3617 7 8 4.3478 2.1640 -2.1176 8 6 4.9161 3.0982 -1.1744 9 6 4.1113 2.8843 0.1268 10 1 3.2903 3.5985 0.1899 11 7 4.9875 3.0044 1.2996 12 6 5.6715 4.3043 1.3150 13 6 4.2349 2.7907 2.5431 14 6 5.2104 2.6750 3.7161 15 6 4.4266 2.4531 5.0112 16 6 5.3874 2.3385 6.1665 17 1 6.4507 2.4166 5.9944 18 6 4.9090 2.1340 7.4433 19 7 5.7475 2.0345 8.4517 20 14 3.0699 1.9996 7.7413 21 1 2.6520 0.5794 7.6246 22 1 2.7512 2.4990 9.1030 23 1 2.3443 2.8135 6.7331 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.3718 0.3328 -1.8637 32 1 5.0425 0.4050 -1.2270 33 1 4.7940 4.1205 -1.5323 34 1 5.9705 2.8766 -1.0091 35 1 6.4135 4.3151 2.1134 36 1 4.9423 5.0964 1.4859 37 1 6.1659 4.4661 0.3571 38 1 3.5635 3.6328 2.7106 39 1 3.6531 1.8725 2.4624 40 1 5.8819 1.8329 3.5486 41 1 5.7922 3.5931 3.7967 42 1 3.7554 3.2954 5.1786 43 1 3.8445 1.5350 4.9308 44 1 5.4109 1.8909 9.3500 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688225421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:59 Heat of formation + Delta-G solvation = -86.223241 kcal Electronic energy + Delta-G solvation = -19769.890184 eV Core-core repulsion = 16913.506819 eV Total energy + Delta-G solvation = -2856.383365 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.06658 -38.13173 -36.19895 -35.59655 -33.64491 -31.98312 -30.07584 -28.62684 -27.09207 -26.61652 -23.87940 -23.39481 -21.68148 -21.36057 -20.95572 -18.87765 -17.84447 -17.24042 -16.54855 -16.36599 -16.05379 -15.83669 -15.50099 -14.96614 -14.85931 -14.63331 -14.37733 -13.76410 -13.67423 -13.59073 -13.35789 -13.00510 -12.92374 -12.75064 -12.48192 -12.41569 -12.23871 -11.97810 -11.83048 -11.73968 -11.54857 -11.39865 -11.30249 -11.25908 -11.21220 -10.76332 -10.68674 -9.32229 -8.29589 -6.33755 1.35100 1.36969 1.48922 2.35815 2.75724 3.05737 3.13580 3.46755 3.81872 3.89802 4.04383 4.13983 4.16782 4.26436 4.33708 4.35888 4.49819 4.51521 4.58620 4.63498 4.68482 4.75197 4.80256 4.83089 4.88898 4.90545 4.96608 4.97699 5.01168 5.06765 5.10525 5.16788 5.28599 5.39341 5.47515 5.51825 5.59333 5.65862 5.74946 6.04748 6.19893 6.30019 6.74503 7.30860 8.87490 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.019634 B = 0.005047 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.779938 B = 5547.026553 C = 6645.042809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.116 4.116 5 H 0.085 0.915 6 C 0.053 3.947 7 O -0.390 6.390 8 C 0.055 3.945 9 C 0.053 3.947 10 H 0.054 0.946 11 N -0.539 5.539 12 C 0.018 3.982 13 C 0.066 3.934 14 C -0.087 4.087 15 C -0.009 4.009 16 C -0.532 4.532 17 H 0.029 0.971 18 C 0.003 3.997 19 N -0.953 5.953 20 Si 0.952 3.048 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.246 1.246 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.028 0.972 37 H 0.085 0.915 38 H 0.031 0.969 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.017 0.983 43 H 0.019 0.981 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.119 -0.278 -21.921 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.143 4.143 4 C -0.135 4.135 5 H 0.103 0.897 6 C -0.024 4.024 7 O -0.309 6.309 8 C -0.022 4.022 9 C -0.056 4.056 10 H 0.072 0.928 11 N -0.264 5.264 12 C -0.129 4.129 13 C -0.062 4.062 14 C -0.125 4.125 15 C -0.047 4.047 16 C -0.570 4.570 17 H 0.047 0.953 18 C -0.194 4.194 19 N -0.594 5.594 20 Si 0.775 3.225 21 H -0.190 1.190 22 H -0.210 1.210 23 H -0.170 1.170 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.793 -0.623 -22.028 23.726 hybrid contribution -0.709 0.559 1.244 1.537 sum -9.502 -0.064 -20.784 22.853 Atomic orbital electron populations 1.21765 0.95354 1.02018 1.01790 1.21570 0.96338 0.96027 1.02291 1.21602 0.92959 0.97762 1.01948 1.22602 0.96509 0.95589 0.98837 0.89683 1.23567 1.00563 0.87657 0.90598 1.89082 1.83376 1.24627 1.33810 1.23517 0.97296 0.94499 0.86928 1.23109 0.94394 0.97124 0.90935 0.92787 1.62099 1.30110 1.32561 1.01672 1.22494 0.98670 0.88505 1.03280 1.22097 0.94937 1.00656 0.88500 1.21275 0.97704 1.00642 0.92900 1.19482 0.95621 0.96315 0.93270 1.21496 0.93830 1.48990 0.92685 0.95252 1.26043 1.03389 0.94207 0.95718 1.70079 1.37126 1.51781 1.00387 0.85638 0.79508 0.79556 0.77825 1.19011 1.20960 1.16991 0.92272 0.92136 0.93277 0.90960 0.92466 0.92594 0.91356 0.87610 0.92009 0.87950 0.91261 0.91812 0.95303 0.89621 0.95117 0.90513 0.93315 0.93435 0.96430 0.96291 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.91 71.98 0.71 -1.60 16 2 C -0.12 -2.06 5.80 30.60 0.18 -1.89 16 3 C -0.11 -1.95 4.46 30.60 0.14 -1.81 16 4 C -0.12 -2.42 2.13 -9.78 -0.02 -2.45 16 5 H 0.08 2.03 6.90 -2.39 -0.02 2.01 16 6 C 0.05 1.02 7.04 72.49 0.51 1.53 16 7 O -0.39 -8.80 11.65 -148.98 -1.74 -10.54 16 8 C 0.05 1.11 5.90 72.49 0.43 1.53 16 9 C 0.05 1.18 2.48 45.94 0.11 1.30 16 10 H 0.05 1.21 7.74 -2.39 -0.02 1.19 16 11 N -0.54 -14.30 4.54 -891.06 -4.04 -18.34 16 12 C 0.02 0.44 9.05 127.69 1.16 1.59 16 13 C 0.07 2.03 4.76 86.30 0.41 2.44 16 14 C -0.09 -3.44 5.07 30.59 0.16 -3.29 16 15 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 16 C -0.53 -31.26 9.66 25.60 0.25 -31.01 16 17 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 18 C 0.00 0.17 5.47 84.65 0.46 0.63 16 19 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 20 Si 0.95 44.52 27.47 68.60 1.88 46.40 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 1.04 6.73 -2.39 -0.02 1.02 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 31 H 0.11 1.69 6.48 -2.39 -0.02 1.68 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 1.73 8.14 -2.39 -0.02 1.72 16 34 H 0.07 1.44 7.57 -2.39 -0.02 1.42 16 35 H 0.06 1.71 6.65 -2.39 -0.02 1.70 16 36 H 0.03 0.66 8.10 -2.38 -0.02 0.64 16 37 H 0.09 1.64 6.49 -2.39 -0.02 1.63 16 38 H 0.03 0.94 8.09 -2.39 -0.02 0.92 16 39 H 0.08 2.30 6.48 -2.39 -0.02 2.28 16 40 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.05 1.91 6.63 -2.39 -0.02 1.89 16 42 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 43 H 0.02 0.86 7.57 -2.38 -0.02 0.84 16 44 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 Total: -1.00 -65.96 336.34 1.89 -64.07 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.88 Total: 12.03 kcal Atomic # 6 Polarization: -37.93 SS G_CDS: 4.61 Total: -33.32 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -3.75 Total: -78.65 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -1.74 Total: -10.54 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -65.96 1.89 -64.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688225421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.156 kcal (2) G-P(sol) polarization free energy of solvation -65.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds