Wall clock time and date at job start Mon Mar 30 2020 06:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46844 * 2 1 4 4 C 1.53010 * 109.46629 * 179.97438 * 3 2 1 5 5 H 1.08991 * 110.56649 * 52.31907 * 4 3 2 6 6 C 1.54481 * 110.50702 * 289.63723 * 4 3 2 7 7 O 1.44427 * 104.80423 * 265.33502 * 6 4 3 8 8 C 1.44427 * 105.27226 * 319.49035 * 7 6 4 9 9 C 1.54479 * 104.80375 * 40.51476 * 8 7 6 10 10 H 1.08998 * 110.62575 * 94.72375 * 9 8 7 11 11 N 1.46907 * 110.50909 * 217.37201 * 9 8 7 12 12 C 1.46896 * 110.99963 * 170.68649 * 11 9 8 13 13 C 1.46896 * 111.00008 * 294.64397 * 11 9 8 14 14 H 1.08998 * 109.47231 * 55.00028 * 13 11 9 15 15 C 1.53001 * 109.47092 * 294.99823 * 13 11 9 16 16 C 1.52997 * 109.46919 * 175.00055 * 13 11 9 17 17 C 1.50706 * 109.47238 * 294.99564 * 16 13 11 18 18 H 1.07999 * 119.99515 * 0.02562 * 17 16 13 19 19 C 1.37870 * 120.00176 * 180.02562 * 17 16 13 20 20 N 1.31520 * 119.99883 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00043 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47293 * 89.99746 * 21 19 17 23 23 H 1.48504 * 109.47104 * 209.99992 * 21 19 17 24 24 H 1.48495 * 109.47249 * 329.99739 * 21 19 17 25 25 H 1.08999 * 109.47201 * 300.00561 * 1 2 3 26 26 H 1.09010 * 109.46909 * 60.00161 * 1 2 3 27 27 H 1.08994 * 109.47638 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47201 * 239.99439 * 2 1 3 29 29 H 1.09002 * 109.46605 * 119.99624 * 2 1 3 30 30 H 1.08995 * 109.47588 * 60.00246 * 3 2 1 31 31 H 1.09002 * 109.47213 * 299.99252 * 3 2 1 32 32 H 1.08997 * 110.37137 * 24.16958 * 6 4 3 33 33 H 1.09005 * 110.36965 * 146.50645 * 6 4 3 34 34 H 1.09000 * 110.37125 * 281.67943 * 8 7 6 35 35 H 1.09001 * 110.36464 * 159.34478 * 8 7 6 36 36 H 1.09000 * 109.47267 * 183.95763 * 12 11 9 37 37 H 1.09001 * 109.46995 * 303.95915 * 12 11 9 38 38 H 1.08999 * 109.46916 * 63.95619 * 12 11 9 39 39 H 1.08998 * 109.47252 * 180.02562 * 15 13 11 40 40 H 1.08998 * 109.47250 * 300.00193 * 15 13 11 41 41 H 1.09000 * 109.46959 * 60.00160 * 15 13 11 42 42 H 1.09001 * 109.46832 * 174.99878 * 16 13 11 43 43 H 1.09000 * 109.47611 * 55.00175 * 16 13 11 44 44 H 0.97004 * 119.99507 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9532 0.8185 -0.8067 6 6 4.1106 0.9564 1.3637 7 8 4.3460 2.1644 2.1194 8 6 4.9152 3.0984 1.1762 9 6 4.1114 2.8840 -0.1255 10 1 3.2892 3.5966 -0.1908 11 7 4.9887 3.0037 -1.2978 12 6 4.2915 2.5872 -2.5218 13 6 5.5099 4.3709 -1.4280 14 1 6.0052 4.6607 -0.5013 15 6 4.3539 5.3325 -1.7108 16 6 6.5133 4.4264 -2.5816 17 6 7.7103 3.5737 -2.2478 18 1 7.7509 3.0447 -1.3071 19 6 8.7533 3.4689 -3.1432 20 7 8.7040 4.1135 -4.2886 21 14 10.2366 2.4114 -2.7298 22 1 10.0080 1.0266 -3.2150 23 1 11.4439 2.9733 -3.3871 24 1 10.4372 2.3935 -1.2585 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.3702 0.3332 1.8652 33 1 5.0418 0.4061 1.2282 34 1 5.9697 2.8766 1.0119 35 1 4.7928 4.1207 1.5338 36 1 4.9839 2.6186 -3.3630 37 1 3.9157 1.5715 -2.3982 38 1 3.4573 3.2625 -2.7124 39 1 4.7406 6.3469 -1.8078 40 1 3.8586 5.0427 -2.6374 41 1 3.6390 5.2929 -0.8889 42 1 6.8331 5.4570 -2.7356 43 1 6.0428 4.0523 -3.4908 44 1 9.4377 4.0395 -4.9187 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688237220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:34 Heat of formation + Delta-G solvation = -57.867672 kcal Electronic energy + Delta-G solvation = -20454.704076 eV Core-core repulsion = 17599.550300 eV Total energy + Delta-G solvation = -2855.153775 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.91289 -37.09561 -35.30169 -32.96281 -31.54433 -29.79299 -28.77363 -27.31692 -26.04579 -24.67781 -23.24004 -22.67696 -20.90082 -19.84695 -18.48850 -16.68990 -16.19788 -16.01213 -15.26764 -14.93835 -14.48709 -14.35404 -14.06157 -13.45729 -13.35702 -13.03322 -12.72197 -12.63820 -12.28200 -11.94079 -11.76377 -11.70972 -11.38238 -11.30417 -11.07769 -11.03247 -10.78004 -10.70438 -10.53906 -10.45270 -10.31292 -10.21458 -9.88763 -9.46677 -9.16959 -9.00060 -8.26738 -7.51416 -5.90113 -3.88193 3.38726 3.44823 3.49035 4.13238 4.47010 4.55465 4.66789 4.87102 4.92108 5.08216 5.10727 5.32010 5.45554 5.49364 5.53575 5.58028 5.67734 5.72107 5.76914 5.82371 5.85339 5.90365 5.94919 5.98438 6.02586 6.05684 6.11707 6.16536 6.21787 6.24142 6.32800 6.50016 6.64072 6.72560 6.96009 6.98632 7.50441 7.68745 7.87607 7.99352 8.11132 8.56065 9.17845 9.73906 11.21776 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023091 B = 0.005550 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.327148 B = 5044.245648 C = 5239.964760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.109 4.109 4 C -0.121 4.121 5 H 0.096 0.904 6 C 0.053 3.947 7 O -0.382 6.382 8 C 0.053 3.947 9 C 0.052 3.948 10 H 0.049 0.951 11 N -0.504 5.504 12 C 0.023 3.977 13 C 0.084 3.916 14 H 0.070 0.930 15 C -0.186 4.186 16 C 0.029 3.971 17 C -0.491 4.491 18 H 0.060 0.940 19 C 0.051 3.949 20 N -0.904 5.904 21 Si 0.889 3.111 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.275 1.275 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.040 0.960 42 H 0.018 0.982 43 H 0.021 0.979 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.024 -5.226 7.990 16.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.146 4.146 4 C -0.139 4.139 5 H 0.114 0.886 6 C -0.024 4.024 7 O -0.300 6.300 8 C -0.024 4.024 9 C -0.057 4.057 10 H 0.067 0.933 11 N -0.228 5.228 12 C -0.125 4.125 13 C -0.024 4.024 14 H 0.088 0.912 15 C -0.245 4.245 16 C -0.008 4.008 17 C -0.529 4.529 18 H 0.078 0.922 19 C -0.148 4.148 20 N -0.545 5.545 21 Si 0.718 3.282 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.200 1.200 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.039 0.961 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.558 -5.475 8.143 16.736 hybrid contribution 0.221 -0.003 -0.330 0.397 sum -13.336 -5.479 7.813 16.399 Atomic orbital electron populations 1.21768 0.96071 1.01352 1.01716 1.21578 0.95633 0.97027 1.02053 1.21636 0.94251 0.96691 1.02060 1.22671 0.95324 0.97069 0.98879 0.88569 1.23441 0.99816 0.88161 0.91009 1.89057 1.83399 1.23976 1.33575 1.23474 0.98291 0.93296 0.87353 1.23055 0.94479 0.95470 0.92734 0.93279 1.62267 1.33960 1.25240 1.01376 1.22442 0.97349 0.98652 0.94039 1.21951 0.94257 0.84358 1.01819 0.91180 1.22516 1.00096 1.01237 1.00602 1.19227 0.92699 0.97110 0.91797 1.21163 1.01420 1.27218 1.03136 0.92167 1.24998 0.98451 0.96098 0.95265 1.69968 1.32503 1.43314 1.08667 0.86637 0.82563 0.80618 0.78393 1.20937 1.21620 1.20003 0.92872 0.92834 0.92949 0.91917 0.91979 0.91801 0.91983 0.89630 0.92184 0.90496 0.89815 0.89748 0.92535 0.96542 0.92464 0.92802 0.94130 0.96342 0.96130 0.93320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.92 16 2 C -0.13 -1.20 5.80 -26.73 -0.15 -1.35 16 3 C -0.11 -1.22 4.45 -26.73 -0.12 -1.33 16 4 C -0.12 -1.60 2.21 -89.05 -0.20 -1.80 16 5 H 0.10 1.35 6.20 -51.93 -0.32 1.03 16 6 C 0.05 0.70 7.04 37.93 0.27 0.97 16 7 O -0.38 -5.97 11.65 -35.23 -0.41 -6.39 16 8 C 0.05 0.83 6.12 37.93 0.23 1.07 16 9 C 0.05 0.80 2.22 -66.14 -0.15 0.65 16 10 H 0.05 0.75 5.98 -51.93 -0.31 0.44 16 11 N -0.50 -9.23 4.27 -225.04 -0.96 -10.19 16 12 C 0.02 0.40 8.52 60.06 0.51 0.91 16 13 C 0.08 1.67 2.16 -67.72 -0.15 1.52 16 14 H 0.07 1.42 7.14 -51.93 -0.37 1.05 16 15 C -0.19 -3.15 8.51 37.16 0.32 -2.84 16 16 C 0.03 0.71 4.26 -27.88 -0.12 0.59 16 17 C -0.49 -13.52 8.84 -34.44 -0.30 -13.82 16 18 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 19 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 20 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 21 Si 0.89 21.94 29.54 -169.99 -5.02 16.91 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.57 6.73 -51.93 -0.35 0.22 16 30 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.96 6.48 -51.93 -0.34 0.63 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.35 8.03 -51.93 -0.42 0.94 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.70 6.22 -51.93 -0.32 1.37 16 37 H 0.06 0.86 6.01 -51.93 -0.31 0.55 16 38 H 0.02 0.26 6.28 -51.93 -0.33 -0.06 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.91 6.39 -51.93 -0.33 0.58 16 41 H 0.04 0.61 6.48 -51.93 -0.34 0.28 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.02 0.54 6.17 -51.93 -0.32 0.22 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 331.16 15.07 4.99 4.99 Total: -1.00 -29.29 331.16 -8.08 -37.37 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.83 Total: -1.47 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 0.41 Total: -14.98 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.23 Total: -36.44 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.41 Total: -6.39 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.29 -8.08 -37.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688237220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.499 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds