Wall clock time and date at job start Mon Mar 30 2020 06:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46844 * 2 1 4 4 C 1.53010 * 109.46629 * 179.97438 * 3 2 1 5 5 H 1.08991 * 110.56649 * 52.31907 * 4 3 2 6 6 C 1.54481 * 110.50702 * 289.63723 * 4 3 2 7 7 O 1.44427 * 104.80423 * 265.33502 * 6 4 3 8 8 C 1.44427 * 105.27226 * 319.49035 * 7 6 4 9 9 C 1.54479 * 104.80375 * 40.51476 * 8 7 6 10 10 H 1.08998 * 110.62575 * 94.72375 * 9 8 7 11 11 N 1.46907 * 110.50909 * 217.37201 * 9 8 7 12 12 C 1.46896 * 110.99963 * 170.68649 * 11 9 8 13 13 C 1.46896 * 111.00008 * 294.64397 * 11 9 8 14 14 H 1.08998 * 109.47231 * 55.00028 * 13 11 9 15 15 C 1.53001 * 109.47092 * 294.99823 * 13 11 9 16 16 C 1.52997 * 109.46919 * 175.00055 * 13 11 9 17 17 C 1.50706 * 109.47238 * 294.99564 * 16 13 11 18 18 H 1.07999 * 119.99515 * 0.02562 * 17 16 13 19 19 C 1.37870 * 120.00176 * 180.02562 * 17 16 13 20 20 N 1.31520 * 119.99883 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00043 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47293 * 89.99746 * 21 19 17 23 23 H 1.48504 * 109.47104 * 209.99992 * 21 19 17 24 24 H 1.48495 * 109.47249 * 329.99739 * 21 19 17 25 25 H 1.08999 * 109.47201 * 300.00561 * 1 2 3 26 26 H 1.09010 * 109.46909 * 60.00161 * 1 2 3 27 27 H 1.08994 * 109.47638 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47201 * 239.99439 * 2 1 3 29 29 H 1.09002 * 109.46605 * 119.99624 * 2 1 3 30 30 H 1.08995 * 109.47588 * 60.00246 * 3 2 1 31 31 H 1.09002 * 109.47213 * 299.99252 * 3 2 1 32 32 H 1.08997 * 110.37137 * 24.16958 * 6 4 3 33 33 H 1.09005 * 110.36965 * 146.50645 * 6 4 3 34 34 H 1.09000 * 110.37125 * 281.67943 * 8 7 6 35 35 H 1.09001 * 110.36464 * 159.34478 * 8 7 6 36 36 H 1.09000 * 109.47267 * 183.95763 * 12 11 9 37 37 H 1.09001 * 109.46995 * 303.95915 * 12 11 9 38 38 H 1.08999 * 109.46916 * 63.95619 * 12 11 9 39 39 H 1.08998 * 109.47252 * 180.02562 * 15 13 11 40 40 H 1.08998 * 109.47250 * 300.00193 * 15 13 11 41 41 H 1.09000 * 109.46959 * 60.00160 * 15 13 11 42 42 H 1.09001 * 109.46832 * 174.99878 * 16 13 11 43 43 H 1.09000 * 109.47611 * 55.00175 * 16 13 11 44 44 H 0.97004 * 119.99507 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9532 0.8185 -0.8067 6 6 4.1106 0.9564 1.3637 7 8 4.3460 2.1644 2.1194 8 6 4.9152 3.0984 1.1762 9 6 4.1114 2.8840 -0.1255 10 1 3.2892 3.5966 -0.1908 11 7 4.9887 3.0037 -1.2978 12 6 4.2915 2.5872 -2.5218 13 6 5.5099 4.3709 -1.4280 14 1 6.0052 4.6607 -0.5013 15 6 4.3539 5.3325 -1.7108 16 6 6.5133 4.4264 -2.5816 17 6 7.7103 3.5737 -2.2478 18 1 7.7509 3.0447 -1.3071 19 6 8.7533 3.4689 -3.1432 20 7 8.7040 4.1135 -4.2886 21 14 10.2366 2.4114 -2.7298 22 1 10.0080 1.0266 -3.2150 23 1 11.4439 2.9733 -3.3871 24 1 10.4372 2.3935 -1.2585 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.3702 0.3332 1.8652 33 1 5.0418 0.4061 1.2282 34 1 5.9697 2.8766 1.0119 35 1 4.7928 4.1207 1.5338 36 1 4.9839 2.6186 -3.3630 37 1 3.9157 1.5715 -2.3982 38 1 3.4573 3.2625 -2.7124 39 1 4.7406 6.3469 -1.8078 40 1 3.8586 5.0427 -2.6374 41 1 3.6390 5.2929 -0.8889 42 1 6.8331 5.4570 -2.7356 43 1 6.0428 4.0523 -3.4908 44 1 9.4377 4.0395 -4.9187 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688237220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:33 Heat of formation + Delta-G solvation = -75.625314 kcal Electronic energy + Delta-G solvation = -20455.474105 eV Core-core repulsion = 17599.550300 eV Total energy + Delta-G solvation = -2855.923804 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.13957 -38.53870 -36.21670 -34.94060 -32.97252 -31.04888 -30.07057 -29.16141 -27.02312 -26.03616 -25.06853 -23.85363 -21.98419 -20.99656 -19.99165 -18.37304 -17.90573 -17.22534 -16.49000 -16.37485 -16.07988 -15.50003 -15.30929 -14.81887 -14.70666 -14.26121 -14.09466 -13.72091 -13.61433 -13.52772 -13.16336 -12.92589 -12.88315 -12.62100 -12.54413 -12.33915 -12.23570 -12.15244 -11.89389 -11.85386 -11.65475 -11.27763 -11.22557 -11.09653 -10.95842 -10.66534 -10.46080 -8.93707 -8.09494 -6.13983 1.42309 1.42499 1.53425 2.47605 2.88842 3.22629 3.30231 3.53763 3.86630 3.94743 4.13162 4.20780 4.22006 4.33808 4.37610 4.41736 4.50446 4.55420 4.58695 4.69032 4.75413 4.77903 4.86420 4.89185 4.94369 4.98195 5.00901 5.09908 5.14098 5.17822 5.22131 5.28074 5.36323 5.42967 5.50605 5.51713 5.68291 5.82485 5.91862 6.31056 6.42802 6.52891 6.99966 7.52064 9.02456 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023091 B = 0.005550 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.327148 B = 5044.245648 C = 5239.964760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.101 4.101 4 C -0.114 4.114 5 H 0.089 0.911 6 C 0.050 3.950 7 O -0.391 6.391 8 C 0.054 3.946 9 C 0.055 3.945 10 H 0.059 0.941 11 N -0.522 5.522 12 C 0.030 3.970 13 C 0.093 3.907 14 H 0.065 0.935 15 C -0.176 4.176 16 C 0.035 3.965 17 C -0.498 4.498 18 H 0.057 0.943 19 C -0.002 4.002 20 N -0.939 5.939 21 Si 0.953 3.047 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.268 1.268 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.030 0.970 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.065 0.935 42 H -0.009 1.009 43 H 0.001 0.999 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.354 -6.298 9.275 19.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.139 4.139 4 C -0.133 4.133 5 H 0.107 0.893 6 C -0.026 4.026 7 O -0.309 6.309 8 C -0.023 4.023 9 C -0.054 4.054 10 H 0.077 0.923 11 N -0.247 5.247 12 C -0.117 4.117 13 C -0.015 4.015 14 H 0.083 0.917 15 C -0.235 4.235 16 C -0.002 4.002 17 C -0.536 4.536 18 H 0.075 0.925 19 C -0.199 4.199 20 N -0.582 5.582 21 Si 0.780 3.220 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.192 1.192 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.009 0.991 43 H 0.019 0.981 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.899 -6.556 9.441 18.817 hybrid contribution 0.624 0.319 -0.716 1.002 sum -14.275 -6.237 8.725 17.855 Atomic orbital electron populations 1.21755 0.95167 1.02021 1.01838 1.21560 0.96394 0.95806 1.02321 1.21575 0.92339 0.97910 1.02051 1.22641 0.96840 0.95279 0.98565 0.89316 1.23592 1.00300 0.87633 0.91111 1.89051 1.83244 1.24659 1.33966 1.23404 0.97057 0.94008 0.87828 1.23084 0.94010 0.97233 0.91053 0.92345 1.62135 1.35617 1.24182 1.02718 1.22335 0.96672 1.00273 0.92467 1.21633 0.94333 0.86386 0.99190 0.91704 1.22385 0.99304 1.00281 1.01495 1.19081 0.93316 0.94708 0.93139 1.21467 1.02339 1.27034 1.02765 0.92507 1.25802 1.01432 0.97432 0.95184 1.70092 1.33473 1.44904 1.09700 0.85621 0.79061 0.78937 0.78421 1.20363 1.21294 1.19223 0.92590 0.92903 0.92058 0.92030 0.91377 0.91708 0.92058 0.87169 0.92818 0.92856 0.88771 0.93304 0.90461 0.95120 0.92425 0.92851 0.91644 0.99100 0.98088 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 71.98 0.71 -1.42 16 2 C -0.12 -2.00 5.80 30.59 0.18 -1.82 16 3 C -0.10 -1.98 4.45 30.60 0.14 -1.84 16 4 C -0.11 -2.80 2.21 -9.77 -0.02 -2.82 16 5 H 0.09 2.33 6.20 -2.39 -0.01 2.32 16 6 C 0.05 1.23 7.04 72.49 0.51 1.74 16 7 O -0.39 -11.52 11.65 -148.98 -1.74 -13.26 16 8 C 0.05 1.65 6.12 72.48 0.44 2.09 16 9 C 0.05 1.60 2.22 45.93 0.10 1.70 16 10 H 0.06 1.63 5.98 -2.39 -0.01 1.61 16 11 N -0.52 -18.81 4.27 -865.88 -3.70 -22.51 16 12 C 0.03 1.03 8.52 127.69 1.09 2.12 16 13 C 0.09 3.68 2.16 44.92 0.10 3.78 16 14 H 0.06 2.63 7.14 -2.39 -0.02 2.61 16 15 C -0.18 -5.76 8.51 71.98 0.61 -5.15 16 16 C 0.03 1.78 4.26 29.85 0.13 1.90 16 17 C -0.50 -27.94 8.84 25.60 0.23 -27.71 16 18 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 19 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 20 N -0.94 -57.33 13.29 21.45 0.28 -57.04 16 21 Si 0.95 45.40 29.54 68.60 2.03 47.42 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.03 6.73 -2.39 -0.02 1.01 16 30 H 0.06 1.28 8.13 -2.39 -0.02 1.27 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.11 2.15 6.48 -2.39 -0.02 2.14 16 33 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.05 1.87 8.03 -2.39 -0.02 1.85 16 35 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.05 2.00 6.22 -2.39 -0.01 1.99 16 37 H 0.08 2.26 6.01 -2.39 -0.01 2.25 16 38 H 0.03 0.94 6.28 -2.39 -0.01 0.93 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 1.74 6.39 -2.39 -0.02 1.73 16 41 H 0.06 1.82 6.48 -2.39 -0.02 1.81 16 42 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 43 H 0.00 0.05 6.17 -2.39 -0.01 0.03 16 44 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -62.97 331.16 2.50 -60.48 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.95 Total: 12.02 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 4.67 Total: -27.11 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -3.41 Total: -79.55 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -1.74 Total: -13.26 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -62.97 2.50 -60.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688237220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.148 kcal (2) G-P(sol) polarization free energy of solvation -62.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds