Wall clock time and date at job start Mon Mar 30 2020 06:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47478 * 2 1 4 4 C 1.52992 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.45891 * 54.70506 * 4 3 2 6 6 C 1.54479 * 110.51602 * 291.94555 * 4 3 2 7 7 O 1.44419 * 104.80639 * 217.37650 * 6 4 3 8 8 C 1.44428 * 105.27502 * 40.51391 * 7 6 4 9 9 C 1.54480 * 104.80162 * 319.48516 * 8 7 6 10 10 H 1.08996 * 110.63022 * 265.27797 * 9 8 7 11 11 N 1.46895 * 110.50923 * 142.62435 * 9 8 7 12 12 C 1.46895 * 111.00271 * 39.29767 * 11 9 8 13 13 C 1.46904 * 110.99867 * 163.25406 * 11 9 8 14 14 H 1.09000 * 109.47275 * 50.18728 * 13 11 9 15 15 C 1.52992 * 109.47109 * 290.18194 * 13 11 9 16 16 C 1.53005 * 109.46807 * 170.18370 * 13 11 9 17 17 C 1.50703 * 109.47270 * 294.99538 * 16 13 11 18 18 H 1.07993 * 119.99699 * 0.02562 * 17 16 13 19 19 C 1.37873 * 119.99782 * 180.02562 * 17 16 13 20 20 N 1.31513 * 120.00389 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99748 * 179.72827 * 19 17 16 22 22 H 1.48501 * 109.47230 * 89.99866 * 21 19 17 23 23 H 1.48498 * 109.47098 * 209.99835 * 21 19 17 24 24 H 1.48499 * 109.47474 * 329.99938 * 21 19 17 25 25 H 1.09007 * 109.47158 * 59.99562 * 1 2 3 26 26 H 1.08997 * 109.47533 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47079 * 300.00006 * 1 2 3 28 28 H 1.08997 * 109.47365 * 239.99935 * 2 1 3 29 29 H 1.09001 * 109.47478 * 120.00172 * 2 1 3 30 30 H 1.09005 * 109.46971 * 59.99927 * 3 2 1 31 31 H 1.09001 * 109.46907 * 300.00521 * 3 2 1 32 32 H 1.08999 * 110.37360 * 336.21196 * 6 4 3 33 33 H 1.09006 * 110.37255 * 98.43479 * 6 4 3 34 34 H 1.09000 * 110.36882 * 200.65887 * 8 7 6 35 35 H 1.08996 * 110.37509 * 78.31883 * 8 7 6 36 36 H 1.09000 * 109.47553 * 177.74326 * 12 11 9 37 37 H 1.09001 * 109.47555 * 297.75131 * 12 11 9 38 38 H 1.09009 * 109.47016 * 57.74703 * 12 11 9 39 39 H 1.09006 * 109.47106 * 55.99044 * 15 13 11 40 40 H 1.08998 * 109.47678 * 175.99088 * 15 13 11 41 41 H 1.09001 * 109.47705 * 295.99468 * 15 13 11 42 42 H 1.09004 * 109.46684 * 175.00052 * 16 13 11 43 43 H 1.08992 * 109.47258 * 55.00332 * 16 13 11 44 44 H 0.97001 * 120.00235 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9513 0.8522 -0.8327 6 6 4.1108 0.9019 1.3429 7 8 5.2792 1.7042 1.6200 8 6 4.9153 3.0497 1.2418 9 6 4.1115 2.8880 -0.0674 10 1 4.7604 3.0123 -0.9343 11 7 3.0033 3.8511 -0.1133 12 6 3.4145 5.1531 0.4285 13 6 2.4830 3.9902 -1.4801 14 1 2.2833 3.0024 -1.8951 15 6 3.5172 4.7090 -2.3487 16 6 1.1871 4.8032 -1.4521 17 6 0.1298 4.0374 -0.6991 18 1 0.3594 3.0681 -0.2819 19 6 -1.1304 4.5743 -0.5429 20 7 -1.4098 5.7549 -1.0506 21 14 -2.4431 3.6217 0.3838 22 1 -2.3853 3.9737 1.8253 23 1 -3.7816 3.9693 -0.1572 24 1 -2.2061 2.1650 0.2201 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.3678 1.0290 2.1302 33 1 4.3841 -0.1489 1.2464 34 1 5.8085 3.6494 1.0670 35 1 4.2957 3.5064 2.0136 36 1 2.5878 5.8586 0.3459 37 1 3.6918 5.0394 1.4766 38 1 4.2693 5.5275 -0.1348 39 1 4.4624 4.1674 -2.3113 40 1 3.1620 4.7492 -3.3784 41 1 3.6642 5.7224 -1.9753 42 1 0.8484 4.9822 -2.4726 43 1 1.3671 5.7570 -0.9564 44 1 -2.2964 6.1328 -0.9404 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688237221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:36 Heat of formation + Delta-G solvation = -45.566628 kcal Electronic energy + Delta-G solvation = -21200.383101 eV Core-core repulsion = 18345.762739 eV Total energy + Delta-G solvation = -2854.620362 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.96959 -37.09752 -34.83532 -32.98468 -31.32801 -30.34136 -27.78056 -27.37901 -25.66687 -25.40214 -23.12552 -22.04173 -20.93779 -19.56440 -18.56415 -16.38809 -16.14238 -16.04658 -15.42658 -14.76882 -14.36536 -14.16754 -13.70190 -13.45099 -13.29623 -12.93848 -12.47138 -12.19534 -12.09226 -11.95931 -11.73425 -11.44355 -11.33219 -11.15979 -10.88178 -10.70980 -10.62873 -10.57404 -10.42878 -10.22930 -10.11204 -9.97638 -9.79760 -9.46257 -9.13496 -8.69640 -8.24518 -7.47823 -5.88319 -3.85605 3.38330 3.45353 3.47584 4.11020 4.55380 4.58776 4.84312 5.03884 5.15373 5.41336 5.49210 5.53048 5.54504 5.60356 5.67600 5.72574 5.82323 5.85234 5.91661 5.94211 5.97271 6.01918 6.09567 6.15782 6.21278 6.31638 6.38189 6.45694 6.49170 6.59885 6.66819 6.74836 6.90738 6.93446 6.99629 7.25817 7.52223 7.67032 7.89235 8.00632 8.14257 8.58324 9.21593 9.76522 11.23953 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.008957 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.096815 B = 3125.399680 C = 4065.902865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.110 4.110 5 H 0.071 0.929 6 C 0.053 3.947 7 O -0.384 6.384 8 C 0.047 3.953 9 C 0.047 3.953 10 H 0.052 0.948 11 N -0.499 5.499 12 C 0.018 3.982 13 C 0.081 3.919 14 H 0.076 0.924 15 C -0.185 4.185 16 C 0.030 3.970 17 C -0.496 4.496 18 H 0.076 0.924 19 C 0.052 3.948 20 N -0.905 5.905 21 Si 0.880 3.120 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.269 1.269 25 H 0.061 0.939 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.015 0.985 39 H 0.039 0.961 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.017 0.983 43 H 0.019 0.981 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.024 -7.228 1.938 12.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.145 4.145 4 C -0.129 4.129 5 H 0.089 0.911 6 C -0.024 4.024 7 O -0.303 6.303 8 C -0.030 4.030 9 C -0.062 4.062 10 H 0.069 0.931 11 N -0.223 5.223 12 C -0.130 4.130 13 C -0.027 4.027 14 H 0.094 0.906 15 C -0.244 4.244 16 C -0.007 4.007 17 C -0.534 4.534 18 H 0.094 0.906 19 C -0.148 4.148 20 N -0.546 5.546 21 Si 0.709 3.291 22 H -0.211 1.211 23 H -0.219 1.219 24 H -0.193 1.193 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.035 0.965 43 H 0.037 0.963 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.707 -7.371 2.312 12.405 hybrid contribution -0.344 0.048 -0.121 0.368 sum 9.362 -7.323 2.192 12.086 Atomic orbital electron populations 1.21769 0.95830 1.00292 1.02907 1.21608 0.96077 0.98088 1.00419 1.21879 0.91609 0.94928 1.06078 1.22541 0.98238 0.94865 0.97238 0.91076 1.23514 0.87442 0.95234 0.96227 1.89046 1.35880 1.19082 1.86277 1.23654 0.98587 0.84797 0.95930 1.23067 0.92255 0.93851 0.97040 0.93055 1.62300 1.29355 1.07992 1.22610 1.22484 0.99830 0.92126 0.98547 1.22099 0.95654 0.99841 0.85092 0.90571 1.22527 0.99539 1.01047 1.01296 1.19210 0.89522 0.94934 0.97033 1.21467 0.94597 1.04606 1.32739 0.90560 1.24996 0.98600 0.94976 0.96197 1.69966 1.21129 1.16946 1.46524 0.86781 0.81408 0.80837 0.80096 1.21082 1.21865 1.19338 0.92018 0.93940 0.92764 0.93065 0.93254 0.90301 0.88426 0.92024 0.89940 0.89942 0.90937 0.89864 0.92330 0.96612 0.94198 0.92624 0.92804 0.96507 0.96295 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.91 37.16 0.37 -2.00 16 2 C -0.12 -1.79 5.79 -26.73 -0.15 -1.94 16 3 C -0.11 -1.76 2.37 -26.73 -0.06 -1.82 16 4 C -0.11 -1.60 3.02 -89.05 -0.27 -1.87 16 5 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 6 C 0.05 0.73 6.40 37.93 0.24 0.97 16 7 O -0.38 -5.87 11.65 -35.23 -0.41 -6.28 16 8 C 0.05 0.67 6.09 37.93 0.23 0.91 16 9 C 0.05 0.72 2.83 -66.14 -0.19 0.53 16 10 H 0.05 0.78 6.15 -51.93 -0.32 0.46 16 11 N -0.50 -8.73 3.08 -225.03 -0.69 -9.42 16 12 C 0.02 0.30 7.96 60.06 0.48 0.78 16 13 C 0.08 1.54 1.58 -67.71 -0.11 1.43 16 14 H 0.08 1.48 5.69 -51.93 -0.30 1.19 16 15 C -0.19 -3.08 8.40 37.15 0.31 -2.77 16 16 C 0.03 0.72 4.37 -27.88 -0.12 0.60 16 17 C -0.50 -12.90 8.70 -34.44 -0.30 -13.20 16 18 H 0.08 1.89 4.54 -52.49 -0.24 1.65 16 19 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 20 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 21 Si 0.88 21.31 29.54 -169.99 -5.02 16.29 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.64 7.54 -51.93 -0.39 0.25 16 30 H 0.08 1.47 7.39 -51.93 -0.38 1.08 16 31 H 0.10 1.83 3.47 -51.93 -0.18 1.65 16 32 H 0.06 0.87 7.78 -51.93 -0.40 0.46 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 1.06 6.34 -51.93 -0.33 0.73 16 36 H 0.08 1.59 6.11 -51.93 -0.32 1.27 16 37 H 0.06 0.87 6.00 -51.93 -0.31 0.56 16 38 H 0.02 0.24 6.69 -51.92 -0.35 -0.11 16 39 H 0.04 0.60 6.34 -51.93 -0.33 0.27 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.90 6.71 -51.93 -0.35 0.55 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.49 6.22 -51.93 -0.32 0.16 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 320.32 15.07 4.83 4.83 Total: -1.00 -28.07 320.32 -7.69 -35.76 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.46 Total: 1.80 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 0.33 Total: -17.07 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.04 Total: -35.32 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.41 Total: -6.28 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.07 -7.69 -35.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688237221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.805 kcal (2) G-P(sol) polarization free energy of solvation -28.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds