Wall clock time and date at job start Mon Mar 30 2020 06:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47478 * 2 1 4 4 C 1.52992 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.45891 * 54.70506 * 4 3 2 6 6 C 1.54479 * 110.51602 * 291.94555 * 4 3 2 7 7 O 1.44419 * 104.80639 * 217.37650 * 6 4 3 8 8 C 1.44428 * 105.27502 * 40.51391 * 7 6 4 9 9 C 1.54480 * 104.80162 * 319.48516 * 8 7 6 10 10 H 1.08996 * 110.63022 * 265.27797 * 9 8 7 11 11 N 1.46895 * 110.50923 * 142.62435 * 9 8 7 12 12 C 1.46895 * 111.00271 * 39.29767 * 11 9 8 13 13 C 1.46904 * 110.99867 * 163.25406 * 11 9 8 14 14 H 1.09000 * 109.47275 * 50.18728 * 13 11 9 15 15 C 1.52992 * 109.47109 * 290.18194 * 13 11 9 16 16 C 1.53005 * 109.46807 * 170.18370 * 13 11 9 17 17 C 1.50703 * 109.47270 * 294.99538 * 16 13 11 18 18 H 1.07993 * 119.99699 * 0.02562 * 17 16 13 19 19 C 1.37873 * 119.99782 * 180.02562 * 17 16 13 20 20 N 1.31513 * 120.00389 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99748 * 179.72827 * 19 17 16 22 22 H 1.48501 * 109.47230 * 89.99866 * 21 19 17 23 23 H 1.48498 * 109.47098 * 209.99835 * 21 19 17 24 24 H 1.48499 * 109.47474 * 329.99938 * 21 19 17 25 25 H 1.09007 * 109.47158 * 59.99562 * 1 2 3 26 26 H 1.08997 * 109.47533 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47079 * 300.00006 * 1 2 3 28 28 H 1.08997 * 109.47365 * 239.99935 * 2 1 3 29 29 H 1.09001 * 109.47478 * 120.00172 * 2 1 3 30 30 H 1.09005 * 109.46971 * 59.99927 * 3 2 1 31 31 H 1.09001 * 109.46907 * 300.00521 * 3 2 1 32 32 H 1.08999 * 110.37360 * 336.21196 * 6 4 3 33 33 H 1.09006 * 110.37255 * 98.43479 * 6 4 3 34 34 H 1.09000 * 110.36882 * 200.65887 * 8 7 6 35 35 H 1.08996 * 110.37509 * 78.31883 * 8 7 6 36 36 H 1.09000 * 109.47553 * 177.74326 * 12 11 9 37 37 H 1.09001 * 109.47555 * 297.75131 * 12 11 9 38 38 H 1.09009 * 109.47016 * 57.74703 * 12 11 9 39 39 H 1.09006 * 109.47106 * 55.99044 * 15 13 11 40 40 H 1.08998 * 109.47678 * 175.99088 * 15 13 11 41 41 H 1.09001 * 109.47705 * 295.99468 * 15 13 11 42 42 H 1.09004 * 109.46684 * 175.00052 * 16 13 11 43 43 H 1.08992 * 109.47258 * 55.00332 * 16 13 11 44 44 H 0.97001 * 120.00235 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9513 0.8522 -0.8327 6 6 4.1108 0.9019 1.3429 7 8 5.2792 1.7042 1.6200 8 6 4.9153 3.0497 1.2418 9 6 4.1115 2.8880 -0.0674 10 1 4.7604 3.0123 -0.9343 11 7 3.0033 3.8511 -0.1133 12 6 3.4145 5.1531 0.4285 13 6 2.4830 3.9902 -1.4801 14 1 2.2833 3.0024 -1.8951 15 6 3.5172 4.7090 -2.3487 16 6 1.1871 4.8032 -1.4521 17 6 0.1298 4.0374 -0.6991 18 1 0.3594 3.0681 -0.2819 19 6 -1.1304 4.5743 -0.5429 20 7 -1.4098 5.7549 -1.0506 21 14 -2.4431 3.6217 0.3838 22 1 -2.3853 3.9737 1.8253 23 1 -3.7816 3.9693 -0.1572 24 1 -2.2061 2.1650 0.2201 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.3678 1.0290 2.1302 33 1 4.3841 -0.1489 1.2464 34 1 5.8085 3.6494 1.0670 35 1 4.2957 3.5064 2.0136 36 1 2.5878 5.8586 0.3459 37 1 3.6918 5.0394 1.4766 38 1 4.2693 5.5275 -0.1348 39 1 4.4624 4.1674 -2.3113 40 1 3.1620 4.7492 -3.3784 41 1 3.6642 5.7224 -1.9753 42 1 0.8484 4.9822 -2.4726 43 1 1.3671 5.7570 -0.9564 44 1 -2.2964 6.1328 -0.9404 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688237221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:36 Heat of formation + Delta-G solvation = -61.908049 kcal Electronic energy + Delta-G solvation = -21201.091718 eV Core-core repulsion = 18345.762739 eV Total energy + Delta-G solvation = -2855.328979 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.20578 -38.46821 -36.05587 -34.92800 -32.88316 -31.62934 -29.21358 -28.98549 -26.99460 -26.64891 -25.03301 -23.24350 -22.21944 -20.96351 -19.96380 -18.22060 -17.51619 -17.33310 -16.69185 -16.35165 -16.00519 -15.40875 -15.11040 -14.77085 -14.68126 -14.25172 -13.96520 -13.79990 -13.45125 -13.37074 -13.25548 -12.96706 -12.73954 -12.66327 -12.50692 -12.32700 -12.13179 -12.02469 -11.87635 -11.65656 -11.46619 -11.26168 -11.20182 -11.00003 -10.64056 -10.50549 -10.34750 -8.83966 -8.02835 -6.04435 1.42844 1.44393 1.53918 2.51577 2.92481 3.27731 3.37689 3.69156 3.89243 3.97415 4.23266 4.24458 4.34561 4.40650 4.42029 4.46814 4.50941 4.55986 4.59987 4.75117 4.75639 4.86128 4.89054 4.92416 5.00169 5.08651 5.11222 5.16184 5.19906 5.22922 5.27754 5.38877 5.47383 5.56674 5.64215 5.75877 5.82537 5.90504 6.03145 6.37431 6.49063 6.59293 7.12727 7.61351 9.09943 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.008957 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.096815 B = 3125.399680 C = 4065.902865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.107 4.107 5 H 0.086 0.914 6 C 0.055 3.945 7 O -0.393 6.393 8 C 0.051 3.949 9 C 0.047 3.953 10 H 0.060 0.940 11 N -0.513 5.513 12 C 0.022 3.978 13 C 0.093 3.907 14 H 0.075 0.925 15 C -0.178 4.178 16 C 0.036 3.964 17 C -0.491 4.491 18 H 0.088 0.912 19 C -0.006 4.006 20 N -0.946 5.946 21 Si 0.936 3.064 22 H -0.284 1.284 23 H -0.297 1.297 24 H -0.251 1.251 25 H 0.038 0.962 26 H 0.065 0.935 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.033 0.967 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.050 0.950 42 H -0.014 1.014 43 H -0.005 1.005 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.769 -9.426 2.537 15.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.137 4.137 4 C -0.126 4.126 5 H 0.104 0.896 6 C -0.022 4.022 7 O -0.312 6.312 8 C -0.026 4.026 9 C -0.062 4.062 10 H 0.078 0.922 11 N -0.237 5.237 12 C -0.126 4.126 13 C -0.015 4.015 14 H 0.093 0.907 15 C -0.236 4.236 16 C -0.001 4.001 17 C -0.530 4.530 18 H 0.106 0.894 19 C -0.201 4.201 20 N -0.589 5.589 21 Si 0.763 3.237 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.175 1.175 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.005 0.995 43 H 0.013 0.987 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.467 -9.590 2.918 15.231 hybrid contribution -0.864 0.734 -0.306 1.174 sum 10.604 -8.855 2.612 14.060 Atomic orbital electron populations 1.21782 0.97040 1.01231 1.00930 1.21572 0.94943 0.96961 1.02132 1.21664 0.93014 0.95731 1.03277 1.22535 0.96779 0.94789 0.98475 0.89572 1.23567 0.87019 0.96281 0.95304 1.89048 1.36379 1.19413 1.86349 1.23656 0.99119 0.84844 0.94977 1.23126 0.91585 0.93458 0.98013 0.92249 1.62168 1.31144 1.08873 1.21496 1.22416 0.99060 0.91163 0.99917 1.21746 0.94083 0.98895 0.86787 0.90729 1.22417 0.99765 1.00851 1.00597 1.19069 0.91999 0.94591 0.94487 1.21927 0.94797 1.04852 1.31381 0.89366 1.25777 1.01021 0.95821 0.97472 1.70109 1.21414 1.18744 1.48625 0.85870 0.78617 0.80568 0.78600 1.21062 1.22326 1.17470 0.94250 0.91606 0.94380 0.91457 0.91264 0.93039 0.91152 0.92544 0.87582 0.88064 0.91592 0.93233 0.90622 0.94810 0.91716 0.92658 0.93105 0.99544 0.98668 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 9.91 71.98 0.71 -3.83 16 2 C -0.12 -3.10 5.79 30.59 0.18 -2.93 16 3 C -0.10 -3.10 2.37 30.59 0.07 -3.02 16 4 C -0.11 -2.82 3.02 -9.78 -0.03 -2.84 16 5 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 6 C 0.05 1.33 6.40 72.48 0.46 1.79 16 7 O -0.39 -10.72 11.65 -148.98 -1.74 -12.46 16 8 C 0.05 1.31 6.09 72.49 0.44 1.75 16 9 C 0.05 1.32 2.83 45.93 0.13 1.45 16 10 H 0.06 1.60 6.15 -2.39 -0.01 1.58 16 11 N -0.51 -17.48 3.08 -865.86 -2.67 -20.15 16 12 C 0.02 0.72 7.96 127.69 1.02 1.74 16 13 C 0.09 3.51 1.58 44.91 0.07 3.59 16 14 H 0.07 2.87 5.69 -2.39 -0.01 2.86 16 15 C -0.18 -5.69 8.40 71.98 0.60 -5.09 16 16 C 0.04 1.77 4.37 29.85 0.13 1.90 16 17 C -0.49 -26.18 8.70 25.60 0.22 -25.95 16 18 H 0.09 4.42 4.54 -2.91 -0.01 4.41 16 19 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 20 N -0.95 -57.67 13.29 21.45 0.28 -57.39 16 21 Si 0.94 44.52 29.54 68.60 2.03 46.55 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.25 -11.08 7.11 99.48 0.71 -10.37 16 25 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.56 7.54 -2.39 -0.02 1.54 16 30 H 0.05 1.87 7.39 -2.38 -0.02 1.86 16 31 H 0.07 2.59 3.47 -2.39 -0.01 2.58 16 32 H 0.06 1.44 7.78 -2.39 -0.02 1.42 16 33 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 1.79 6.34 -2.39 -0.02 1.77 16 36 H 0.05 1.94 6.11 -2.39 -0.01 1.93 16 37 H 0.08 2.17 6.00 -2.39 -0.01 2.15 16 38 H 0.03 0.96 6.69 -2.38 -0.02 0.95 16 39 H 0.06 1.76 6.34 -2.38 -0.02 1.74 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 1.65 6.71 -2.39 -0.02 1.63 16 42 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 43 H 0.00 -0.27 6.22 -2.39 -0.01 -0.28 16 44 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -61.58 320.32 3.35 -58.23 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.97 Total: 16.52 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: 4.48 Total: -31.31 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -2.38 Total: -77.53 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -1.74 Total: -12.46 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -61.58 3.35 -58.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688237221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.674 kcal (2) G-P(sol) polarization free energy of solvation -61.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds