Wall clock time and date at job start Mon Mar 30 2020 06:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46898 * 2 1 4 4 C 1.52996 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.45750 * 58.73548 * 4 3 2 6 6 C 1.54483 * 110.51640 * 296.13104 * 4 3 2 7 7 O 1.44423 * 104.80331 * 217.37828 * 6 4 3 8 8 C 1.44422 * 105.27924 * 40.50686 * 7 6 4 9 9 C 1.54482 * 104.80321 * 319.49029 * 8 7 6 10 10 H 1.08993 * 110.51279 * 265.33020 * 9 8 7 11 11 N 1.46901 * 110.51228 * 142.62025 * 9 8 7 12 12 C 1.46900 * 111.00072 * 164.74234 * 11 9 8 13 13 C 1.46900 * 111.00063 * 40.78834 * 11 9 8 14 14 H 1.09005 * 109.47195 * 307.46740 * 13 11 9 15 15 C 1.52995 * 109.47184 * 67.46212 * 13 11 9 16 16 C 1.53003 * 109.47487 * 187.46341 * 13 11 9 17 17 C 1.50704 * 109.46746 * 64.99997 * 16 13 11 18 18 H 1.07998 * 120.00447 * 359.97438 * 17 16 13 19 19 C 1.37879 * 119.99713 * 180.02562 * 17 16 13 20 20 N 1.31513 * 120.00053 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99842 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47395 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47389 * 119.99799 * 21 19 17 24 24 H 1.48505 * 109.46986 * 239.99439 * 21 19 17 25 25 H 1.08994 * 109.47461 * 60.00009 * 1 2 3 26 26 H 1.09008 * 109.46897 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46922 * 299.99434 * 1 2 3 28 28 H 1.08997 * 109.47416 * 240.00378 * 2 1 3 29 29 H 1.09000 * 109.47839 * 119.99969 * 2 1 3 30 30 H 1.09006 * 109.47007 * 60.00551 * 3 2 1 31 31 H 1.08994 * 109.47057 * 300.00238 * 3 2 1 32 32 H 1.08998 * 110.36828 * 336.20612 * 6 4 3 33 33 H 1.08997 * 110.37350 * 98.43059 * 6 4 3 34 34 H 1.08997 * 110.37165 * 78.31987 * 8 7 6 35 35 H 1.09001 * 110.37573 * 200.65747 * 8 7 6 36 36 H 1.08996 * 109.47264 * 50.68374 * 12 11 9 37 37 H 1.09000 * 109.46751 * 170.68678 * 12 11 9 38 38 H 1.08996 * 109.47209 * 290.68499 * 12 11 9 39 39 H 1.08998 * 109.47580 * 180.02562 * 15 13 11 40 40 H 1.09003 * 109.47278 * 300.00028 * 15 13 11 41 41 H 1.09002 * 109.47353 * 60.00197 * 15 13 11 42 42 H 1.08991 * 109.47309 * 184.99821 * 16 13 11 43 43 H 1.08995 * 109.46529 * 305.00367 * 16 13 11 44 44 H 0.96997 * 120.00101 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9513 0.9125 -0.8721 6 6 4.1108 0.8056 1.2999 7 8 5.2791 1.5858 1.6348 8 6 4.9151 2.9552 1.3557 9 6 4.1113 2.8893 0.0381 10 1 4.7620 3.0759 -0.8160 11 7 3.0029 3.8531 0.0626 12 6 2.4594 4.0648 -1.2857 13 6 3.4240 5.1245 0.6660 14 1 3.8794 4.9324 1.6376 15 6 4.4419 5.8102 -0.2475 16 6 2.2057 6.0328 0.8443 17 6 1.2589 5.4134 1.8398 18 1 1.5015 4.4665 2.2989 19 6 0.0822 6.0551 2.1635 20 7 -0.2135 7.2080 1.6040 21 14 -1.0911 5.2877 3.3979 22 1 -0.5305 3.9996 3.8791 23 1 -1.2723 6.2096 4.5479 24 1 -2.4037 5.0437 2.7475 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9564 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.3677 0.8750 2.0944 33 1 4.3842 -0.2352 1.1270 34 1 4.2954 3.3543 2.1587 35 1 5.8082 3.5663 1.2251 36 1 2.2439 3.1006 -1.7460 37 1 1.5417 4.6492 -1.2198 38 1 3.1894 4.6015 -1.8915 39 1 4.7548 6.7533 0.2004 40 1 5.3099 5.1632 -0.3745 41 1 3.9867 6.0023 -1.2191 42 1 2.5295 7.0076 1.2089 43 1 1.6989 6.1529 -0.1131 44 1 -1.0411 7.6596 1.8320 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688237222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:39 Heat of formation + Delta-G solvation = -46.768347 kcal Electronic energy + Delta-G solvation = -20931.641785 eV Core-core repulsion = 18076.969313 eV Total energy + Delta-G solvation = -2854.672472 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.97521 -37.02942 -35.12776 -32.91314 -31.44891 -29.67386 -28.92503 -27.27391 -25.78599 -24.56898 -23.17170 -22.66234 -21.01701 -19.63832 -18.36730 -16.37305 -16.26003 -15.97929 -15.35565 -14.68636 -14.53372 -14.32877 -13.88360 -13.54110 -13.17339 -12.95159 -12.74081 -12.44388 -12.23071 -11.81625 -11.76045 -11.55059 -11.21700 -11.08969 -10.99460 -10.78045 -10.73328 -10.67387 -10.45041 -10.27222 -10.23867 -10.00160 -9.89092 -9.40918 -9.13613 -8.96436 -8.27353 -7.48617 -5.90396 -3.88184 3.36428 3.44491 3.49223 4.13284 4.54435 4.60877 4.79074 4.98051 5.08730 5.27938 5.41053 5.46006 5.48427 5.50989 5.56956 5.71270 5.75088 5.87656 5.89558 5.91904 5.95906 6.00336 6.08737 6.11327 6.12043 6.14883 6.19615 6.27291 6.42147 6.44242 6.58805 6.69601 6.72316 6.93343 6.97813 7.01900 7.50312 7.68494 7.87783 7.99321 8.10931 8.56079 9.18007 9.73786 11.21554 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015407 B = 0.008408 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.971277 B = 3329.394256 C = 4211.049555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.105 4.105 4 C -0.110 4.110 5 H 0.070 0.930 6 C 0.053 3.947 7 O -0.384 6.384 8 C 0.047 3.953 9 C 0.052 3.948 10 H 0.046 0.954 11 N -0.498 5.498 12 C 0.018 3.982 13 C 0.077 3.923 14 H 0.075 0.925 15 C -0.186 4.186 16 C 0.030 3.970 17 C -0.488 4.488 18 H 0.060 0.940 19 C 0.051 3.949 20 N -0.903 5.903 21 Si 0.886 3.114 22 H -0.273 1.273 23 H -0.288 1.288 24 H -0.287 1.287 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.019 0.981 39 H 0.056 0.944 40 H 0.038 0.962 41 H 0.054 0.946 42 H 0.017 0.983 43 H 0.020 0.980 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.791 -11.129 -4.830 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.142 4.142 4 C -0.129 4.129 5 H 0.089 0.911 6 C -0.024 4.024 7 O -0.302 6.302 8 C -0.030 4.030 9 C -0.057 4.057 10 H 0.064 0.936 11 N -0.221 5.221 12 C -0.129 4.129 13 C -0.031 4.031 14 H 0.093 0.907 15 C -0.245 4.245 16 C -0.007 4.007 17 C -0.526 4.526 18 H 0.079 0.921 19 C -0.148 4.148 20 N -0.544 5.544 21 Si 0.715 3.285 22 H -0.197 1.197 23 H -0.215 1.215 24 H -0.214 1.214 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.492 -11.282 -4.442 13.753 hybrid contribution -0.277 0.145 -0.023 0.314 sum 6.214 -11.138 -4.464 13.513 Atomic orbital electron populations 1.21745 0.96050 1.00722 1.02325 1.21627 0.95894 0.98042 1.00906 1.21680 0.92508 0.94940 1.05071 1.22522 0.97596 0.94981 0.97817 0.91137 1.23474 0.87725 0.95297 0.95884 1.89050 1.35634 1.18005 1.87559 1.23701 0.98791 0.83761 0.96758 1.22972 0.92252 0.93437 0.97087 0.93616 1.62302 1.29142 1.10421 1.20274 1.22615 1.00576 1.00663 0.89082 1.22094 0.96630 0.88515 0.95842 0.90682 1.22556 0.99323 1.01046 1.01531 1.19191 0.90783 0.93231 0.97474 1.21180 1.03105 1.05580 1.22762 0.92142 1.24994 0.98181 0.95027 0.96618 1.69970 1.24630 1.15793 1.44015 0.86620 0.81142 0.79360 0.81373 1.19742 1.21452 1.21363 0.92798 0.93553 0.92406 0.92994 0.92651 0.89539 0.90706 0.91917 0.90003 0.90250 0.89771 0.92079 0.89932 0.96270 0.92521 0.94294 0.92676 0.96431 0.96224 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.13 -1.54 5.75 -26.73 -0.15 -1.69 16 3 C -0.10 -1.50 3.50 -26.73 -0.09 -1.59 16 4 C -0.11 -1.51 3.06 -89.05 -0.27 -1.78 16 5 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 6 C 0.05 0.73 6.20 37.94 0.24 0.97 16 7 O -0.38 -6.11 11.65 -35.23 -0.41 -6.52 16 8 C 0.05 0.73 5.77 37.94 0.22 0.94 16 9 C 0.05 0.80 2.15 -66.14 -0.14 0.65 16 10 H 0.05 0.69 7.56 -51.93 -0.39 0.29 16 11 N -0.50 -8.76 3.03 -225.03 -0.68 -9.44 16 12 C 0.02 0.31 7.98 60.06 0.48 0.79 16 13 C 0.08 1.48 1.83 -67.71 -0.12 1.36 16 14 H 0.08 1.48 5.61 -51.93 -0.29 1.19 16 15 C -0.19 -3.09 8.52 37.16 0.32 -2.77 16 16 C 0.03 0.74 4.31 -27.88 -0.12 0.62 16 17 C -0.49 -13.17 8.84 -34.44 -0.30 -13.47 16 18 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 19 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 20 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 21 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.64 7.37 -51.93 -0.38 0.26 16 30 H 0.09 1.51 7.77 -51.93 -0.40 1.11 16 31 H 0.07 1.11 4.90 -51.93 -0.25 0.86 16 32 H 0.06 0.90 7.81 -51.93 -0.41 0.50 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.37 6.48 -51.93 -0.34 1.03 16 35 H 0.08 1.21 7.85 -51.93 -0.41 0.80 16 36 H 0.06 0.90 5.45 -51.93 -0.28 0.62 16 37 H 0.08 1.60 6.56 -51.93 -0.34 1.26 16 38 H 0.02 0.30 5.94 -51.93 -0.31 -0.01 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.04 0.57 6.72 -51.93 -0.35 0.23 16 41 H 0.05 0.92 6.23 -51.93 -0.32 0.59 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.02 0.51 6.36 -51.93 -0.33 0.18 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -28.67 325.91 -7.89 -36.56 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.73 Total: -0.04 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 0.31 Total: -16.13 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.05 Total: -35.47 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.41 Total: -6.52 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.67 -7.89 -36.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688237222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.210 kcal (2) G-P(sol) polarization free energy of solvation -28.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds