Wall clock time and date at job start Mon Mar 30 2020 06:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46898 * 2 1 4 4 C 1.52996 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.45750 * 58.73548 * 4 3 2 6 6 C 1.54483 * 110.51640 * 296.13104 * 4 3 2 7 7 O 1.44423 * 104.80331 * 217.37828 * 6 4 3 8 8 C 1.44422 * 105.27924 * 40.50686 * 7 6 4 9 9 C 1.54482 * 104.80321 * 319.49029 * 8 7 6 10 10 H 1.08993 * 110.51279 * 265.33020 * 9 8 7 11 11 N 1.46901 * 110.51228 * 142.62025 * 9 8 7 12 12 C 1.46900 * 111.00072 * 164.74234 * 11 9 8 13 13 C 1.46900 * 111.00063 * 40.78834 * 11 9 8 14 14 H 1.09005 * 109.47195 * 307.46740 * 13 11 9 15 15 C 1.52995 * 109.47184 * 67.46212 * 13 11 9 16 16 C 1.53003 * 109.47487 * 187.46341 * 13 11 9 17 17 C 1.50704 * 109.46746 * 64.99997 * 16 13 11 18 18 H 1.07998 * 120.00447 * 359.97438 * 17 16 13 19 19 C 1.37879 * 119.99713 * 180.02562 * 17 16 13 20 20 N 1.31513 * 120.00053 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99842 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47395 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47389 * 119.99799 * 21 19 17 24 24 H 1.48505 * 109.46986 * 239.99439 * 21 19 17 25 25 H 1.08994 * 109.47461 * 60.00009 * 1 2 3 26 26 H 1.09008 * 109.46897 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46922 * 299.99434 * 1 2 3 28 28 H 1.08997 * 109.47416 * 240.00378 * 2 1 3 29 29 H 1.09000 * 109.47839 * 119.99969 * 2 1 3 30 30 H 1.09006 * 109.47007 * 60.00551 * 3 2 1 31 31 H 1.08994 * 109.47057 * 300.00238 * 3 2 1 32 32 H 1.08998 * 110.36828 * 336.20612 * 6 4 3 33 33 H 1.08997 * 110.37350 * 98.43059 * 6 4 3 34 34 H 1.08997 * 110.37165 * 78.31987 * 8 7 6 35 35 H 1.09001 * 110.37573 * 200.65747 * 8 7 6 36 36 H 1.08996 * 109.47264 * 50.68374 * 12 11 9 37 37 H 1.09000 * 109.46751 * 170.68678 * 12 11 9 38 38 H 1.08996 * 109.47209 * 290.68499 * 12 11 9 39 39 H 1.08998 * 109.47580 * 180.02562 * 15 13 11 40 40 H 1.09003 * 109.47278 * 300.00028 * 15 13 11 41 41 H 1.09002 * 109.47353 * 60.00197 * 15 13 11 42 42 H 1.08991 * 109.47309 * 184.99821 * 16 13 11 43 43 H 1.08995 * 109.46529 * 305.00367 * 16 13 11 44 44 H 0.96997 * 120.00101 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9513 0.9125 -0.8721 6 6 4.1108 0.8056 1.2999 7 8 5.2791 1.5858 1.6348 8 6 4.9151 2.9552 1.3557 9 6 4.1113 2.8893 0.0381 10 1 4.7620 3.0759 -0.8160 11 7 3.0029 3.8531 0.0626 12 6 2.4594 4.0648 -1.2857 13 6 3.4240 5.1245 0.6660 14 1 3.8794 4.9324 1.6376 15 6 4.4419 5.8102 -0.2475 16 6 2.2057 6.0328 0.8443 17 6 1.2589 5.4134 1.8398 18 1 1.5015 4.4665 2.2989 19 6 0.0822 6.0551 2.1635 20 7 -0.2135 7.2080 1.6040 21 14 -1.0911 5.2877 3.3979 22 1 -0.5305 3.9996 3.8791 23 1 -1.2723 6.2096 4.5479 24 1 -2.4037 5.0437 2.7475 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9564 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.3677 0.8750 2.0944 33 1 4.3842 -0.2352 1.1270 34 1 4.2954 3.3543 2.1587 35 1 5.8082 3.5663 1.2251 36 1 2.2439 3.1006 -1.7460 37 1 1.5417 4.6492 -1.2198 38 1 3.1894 4.6015 -1.8915 39 1 4.7548 6.7533 0.2004 40 1 5.3099 5.1632 -0.3745 41 1 3.9867 6.0023 -1.2191 42 1 2.5295 7.0076 1.2089 43 1 1.6989 6.1529 -0.1131 44 1 -1.0411 7.6596 1.8320 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688237222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:39 Heat of formation + Delta-G solvation = -63.413934 kcal Electronic energy + Delta-G solvation = -20932.363592 eV Core-core repulsion = 18076.969313 eV Total energy + Delta-G solvation = -2855.394279 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.22465 -38.43770 -36.25302 -34.89685 -32.89156 -31.03671 -30.19870 -29.07252 -26.92798 -25.96046 -24.94110 -23.99374 -22.15924 -20.93616 -19.79874 -18.34125 -17.54009 -17.37219 -16.58611 -16.44258 -15.88188 -15.70736 -15.13065 -14.83799 -14.64480 -14.25169 -14.02830 -13.87108 -13.67213 -13.47562 -13.10412 -12.97204 -12.78176 -12.54969 -12.41673 -12.28899 -12.20191 -12.13215 -11.96397 -11.68871 -11.39686 -11.29892 -11.17717 -11.06134 -10.84924 -10.62410 -10.44369 -8.85769 -8.08682 -6.12259 1.39571 1.41641 1.53567 2.47398 2.89862 3.24758 3.35065 3.63964 3.82822 3.96191 4.18234 4.23733 4.32874 4.36068 4.40658 4.44334 4.49766 4.51282 4.62447 4.69224 4.83685 4.85112 4.86229 4.92785 4.95503 5.03184 5.10671 5.12319 5.18286 5.22459 5.26170 5.34564 5.43330 5.51572 5.57824 5.69419 5.79560 5.82474 5.93754 6.33633 6.46428 6.55018 7.01994 7.53429 9.03491 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015407 B = 0.008408 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.971277 B = 3329.394256 C = 4211.049555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.098 4.098 4 C -0.104 4.104 5 H 0.095 0.905 6 C 0.051 3.949 7 O -0.394 6.394 8 C 0.048 3.952 9 C 0.053 3.947 10 H 0.060 0.940 11 N -0.512 5.512 12 C 0.025 3.975 13 C 0.086 3.914 14 H 0.071 0.929 15 C -0.176 4.176 16 C 0.037 3.963 17 C -0.490 4.490 18 H 0.057 0.943 19 C -0.003 4.003 20 N -0.940 5.940 21 Si 0.949 3.051 22 H -0.265 1.265 23 H -0.285 1.285 24 H -0.284 1.284 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.109 0.891 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.031 0.969 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.053 0.947 42 H -0.011 1.011 43 H -0.002 1.002 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.836 -13.402 -5.413 16.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.135 4.135 4 C -0.123 4.123 5 H 0.113 0.887 6 C -0.025 4.025 7 O -0.312 6.312 8 C -0.028 4.028 9 C -0.056 4.056 10 H 0.078 0.922 11 N -0.236 5.236 12 C -0.122 4.122 13 C -0.022 4.022 14 H 0.089 0.911 15 C -0.235 4.235 16 C 0.000 4.000 17 C -0.528 4.528 18 H 0.075 0.925 19 C -0.199 4.199 20 N -0.582 5.582 21 Si 0.775 3.225 22 H -0.190 1.190 23 H -0.211 1.211 24 H -0.210 1.210 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.127 0.873 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.007 0.993 43 H 0.017 0.983 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.545 -13.570 -5.021 16.319 hybrid contribution -0.601 0.838 0.158 1.043 sum 6.945 -12.732 -4.863 15.297 Atomic orbital electron populations 1.21758 0.96410 1.01605 1.01213 1.21587 0.95558 0.96532 1.02212 1.21540 0.93095 0.96100 1.02782 1.22535 0.96919 0.94052 0.98791 0.88702 1.23599 0.86999 0.96486 0.95418 1.89045 1.36396 1.18038 1.87752 1.23640 0.99037 0.84065 0.96085 1.23030 0.91606 0.93583 0.97367 0.92172 1.62168 1.30689 1.09895 1.20826 1.22523 0.99254 1.01474 0.88999 1.21776 0.94790 0.88803 0.96855 0.91097 1.22427 0.99257 1.01233 1.00585 1.19039 0.92494 0.92990 0.95517 1.21465 1.03481 1.05179 1.22695 0.92508 1.25775 1.00032 0.95519 0.98550 1.70091 1.25253 1.17209 1.45661 0.85633 0.78997 0.78723 0.79101 1.18963 1.21093 1.21049 0.93102 0.91672 0.94363 0.90915 0.91957 0.93322 0.91445 0.93139 0.87251 0.92634 0.88379 0.89851 0.93465 0.95056 0.92603 0.91688 0.92772 0.99268 0.98326 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.91 71.98 0.71 -2.79 16 2 C -0.12 -2.64 5.75 30.60 0.18 -2.47 16 3 C -0.10 -2.65 3.50 30.59 0.11 -2.55 16 4 C -0.10 -2.57 3.06 -9.78 -0.03 -2.60 16 5 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 6 C 0.05 1.29 6.20 72.49 0.45 1.74 16 7 O -0.39 -11.64 11.65 -148.98 -1.74 -13.38 16 8 C 0.05 1.43 5.77 72.49 0.42 1.85 16 9 C 0.05 1.51 2.15 45.93 0.10 1.61 16 10 H 0.06 1.58 7.56 -2.39 -0.02 1.56 16 11 N -0.51 -17.77 3.03 -865.87 -2.62 -20.39 16 12 C 0.03 0.82 7.98 127.69 1.02 1.84 16 13 C 0.09 3.33 1.83 44.91 0.08 3.41 16 14 H 0.07 2.81 5.61 -2.38 -0.01 2.80 16 15 C -0.18 -5.66 8.52 71.98 0.61 -5.04 16 16 C 0.04 1.86 4.31 29.85 0.13 1.99 16 17 C -0.49 -27.19 8.84 25.60 0.23 -26.97 16 18 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 19 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 20 N -0.94 -57.24 13.29 21.45 0.28 -56.96 16 21 Si 0.95 45.36 29.54 68.60 2.03 47.39 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 25 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.28 7.37 -2.39 -0.02 1.26 16 30 H 0.05 1.70 7.77 -2.38 -0.02 1.68 16 31 H 0.07 1.91 4.90 -2.39 -0.01 1.90 16 32 H 0.05 1.39 7.81 -2.39 -0.02 1.37 16 33 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.06 1.91 6.48 -2.39 -0.02 1.90 16 35 H 0.10 2.59 7.85 -2.39 -0.02 2.57 16 36 H 0.08 2.34 5.45 -2.39 -0.01 2.32 16 37 H 0.05 1.88 6.56 -2.39 -0.02 1.86 16 38 H 0.03 0.94 5.94 -2.39 -0.01 0.93 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.06 1.75 6.72 -2.39 -0.02 1.74 16 41 H 0.05 1.74 6.23 -2.39 -0.01 1.73 16 42 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 43 H 0.00 -0.08 6.36 -2.39 -0.02 -0.10 16 44 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -62.66 325.91 3.37 -59.29 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.95 Total: 13.73 kcal Atomic # 6 Polarization: -34.14 SS G_CDS: 4.47 Total: -29.68 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -2.34 Total: -77.35 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -1.74 Total: -13.38 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -62.66 3.37 -59.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688237222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.121 kcal (2) G-P(sol) polarization free energy of solvation -62.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds