Wall clock time and date at job start Mon Mar 30 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47105 * 2 1 4 4 C 1.53001 * 109.47388 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.45537 * 56.14917 * 4 3 2 6 6 C 1.54476 * 110.51038 * 293.54623 * 4 3 2 7 7 O 1.44427 * 104.80301 * 265.33357 * 6 4 3 8 8 C 1.44428 * 105.27363 * 319.48586 * 7 6 4 9 9 C 1.54480 * 104.79784 * 40.51278 * 8 7 6 10 10 H 1.09004 * 110.50947 * 94.66796 * 9 8 7 11 11 N 1.46897 * 110.50754 * 217.37282 * 9 8 7 12 12 C 1.46905 * 111.00315 * 304.19542 * 11 9 8 13 13 C 1.46903 * 111.00342 * 180.24251 * 11 9 8 14 14 H 1.09002 * 109.46613 * 310.66073 * 13 11 9 15 15 C 1.53007 * 109.47058 * 70.65385 * 13 11 9 16 16 C 1.52996 * 109.47449 * 190.65775 * 13 11 9 17 17 C 1.50706 * 109.46756 * 65.00171 * 16 13 11 18 18 H 1.07989 * 120.00260 * 359.97438 * 17 16 13 19 19 C 1.37885 * 119.99634 * 179.97438 * 17 16 13 20 20 N 1.31514 * 119.99903 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99866 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47233 * 89.99862 * 21 19 17 23 23 H 1.48491 * 109.46968 * 209.99913 * 21 19 17 24 24 H 1.48499 * 109.47248 * 330.00009 * 21 19 17 25 25 H 1.09001 * 109.47336 * 300.00192 * 1 2 3 26 26 H 1.08999 * 109.46692 * 60.00565 * 1 2 3 27 27 H 1.09000 * 109.46491 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47206 * 119.99321 * 2 1 3 29 29 H 1.08991 * 109.47420 * 239.99996 * 2 1 3 30 30 H 1.08998 * 109.46923 * 300.00103 * 3 2 1 31 31 H 1.09001 * 109.47181 * 59.99713 * 3 2 1 32 32 H 1.09003 * 110.37415 * 24.16489 * 6 4 3 33 33 H 1.08997 * 110.37470 * 146.38942 * 6 4 3 34 34 H 1.09003 * 110.36994 * 159.34361 * 8 7 6 35 35 H 1.08996 * 110.36979 * 281.57508 * 8 7 6 36 36 H 1.09003 * 109.47130 * 66.76738 * 12 11 9 37 37 H 1.09003 * 109.47515 * 186.76877 * 12 11 9 38 38 H 1.08997 * 109.46637 * 306.76814 * 12 11 9 39 39 H 1.08996 * 109.47104 * 301.31485 * 15 13 11 40 40 H 1.08998 * 109.46655 * 61.31396 * 15 13 11 41 41 H 1.08997 * 109.46717 * 181.31173 * 15 13 11 42 42 H 1.08997 * 109.47057 * 184.99447 * 16 13 11 43 43 H 1.08995 * 109.47483 * 305.00032 * 16 13 11 44 44 H 0.97003 * 119.99689 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9514 0.8736 -0.8473 6 6 4.1108 0.8648 1.3273 7 8 4.3460 2.0186 2.1636 8 6 4.9152 3.0147 1.2862 9 6 4.1114 2.8894 -0.0270 10 1 3.2890 3.6047 -0.0412 11 7 4.9886 3.0886 -1.1884 12 6 5.6860 4.3789 -1.1062 13 6 4.2337 2.9774 -2.4437 14 1 3.6333 2.0677 -2.4271 15 6 3.3153 4.1917 -2.5959 16 6 5.2082 2.9240 -3.6219 17 6 6.0296 1.6633 -3.5376 18 1 5.8726 0.9698 -2.7248 19 6 6.9817 1.3953 -4.4983 20 7 7.1725 2.2396 -5.4884 21 14 8.0003 -0.1670 -4.3935 22 1 7.3106 -1.2579 -5.1279 23 1 9.3350 0.0708 -4.9994 24 1 8.1652 -0.5559 -2.9698 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.3704 0.2089 1.7853 33 1 5.0408 0.3235 1.1544 34 1 4.7927 4.0104 1.7126 35 1 5.9701 2.8058 1.1087 36 1 6.3832 4.3624 -0.2684 37 1 6.2342 4.5553 -2.0317 38 1 4.9581 5.1765 -0.9575 39 1 2.6365 4.2428 -1.7447 40 1 3.9172 5.0996 -2.6357 41 1 2.7382 4.0977 -3.5158 42 1 4.6483 2.9309 -4.5571 43 1 5.8682 3.7907 -3.5871 44 1 7.8420 2.0508 -6.1645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688237223.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:42 Heat of formation + Delta-G solvation = -59.911563 kcal Electronic energy + Delta-G solvation = -20638.053418 eV Core-core repulsion = 17782.811013 eV Total energy + Delta-G solvation = -2855.242405 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.89163 -37.08250 -35.17506 -32.95923 -31.36721 -30.48679 -27.86888 -27.34313 -25.99812 -25.27313 -23.15429 -22.42841 -20.56345 -20.11098 -18.40093 -16.68847 -16.17553 -16.00172 -15.37699 -14.90886 -14.47654 -14.37474 -13.78738 -13.54128 -13.28844 -12.94071 -12.64419 -12.51744 -12.19044 -11.91258 -11.84049 -11.69654 -11.47089 -11.26550 -11.08945 -11.02346 -10.66275 -10.65373 -10.54794 -10.40265 -10.29816 -10.16419 -9.87727 -9.49445 -9.17928 -8.98065 -8.26710 -7.51970 -5.89906 -3.87662 3.37653 3.44280 3.48849 4.12856 4.50209 4.55488 4.71567 4.97867 5.00973 5.15588 5.18689 5.40189 5.46766 5.49947 5.54934 5.67697 5.75033 5.76325 5.82579 5.85968 5.88108 5.94582 5.97241 6.01087 6.03982 6.08116 6.12942 6.17594 6.26741 6.35993 6.46970 6.51459 6.58597 6.68905 6.94405 7.01027 7.50868 7.67073 7.88271 8.00732 8.11225 8.56692 9.17873 9.74028 11.22070 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017145 B = 0.006628 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.777127 B = 4223.564874 C = 4479.012272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.108 4.108 4 C -0.117 4.117 5 H 0.102 0.898 6 C 0.051 3.949 7 O -0.382 6.382 8 C 0.052 3.948 9 C 0.054 3.946 10 H 0.048 0.952 11 N -0.504 5.504 12 C 0.023 3.977 13 C 0.086 3.914 14 H 0.072 0.928 15 C -0.184 4.184 16 C 0.030 3.970 17 C -0.489 4.489 18 H 0.059 0.941 19 C 0.051 3.949 20 N -0.904 5.904 21 Si 0.888 3.112 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.274 1.274 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.015 0.985 39 H 0.039 0.961 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.567 0.243 11.612 15.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.146 4.146 4 C -0.136 4.136 5 H 0.120 0.880 6 C -0.025 4.025 7 O -0.300 6.300 8 C -0.025 4.025 9 C -0.056 4.056 10 H 0.066 0.934 11 N -0.228 5.228 12 C -0.125 4.125 13 C -0.022 4.022 14 H 0.090 0.910 15 C -0.243 4.243 16 C -0.007 4.007 17 C -0.527 4.527 18 H 0.078 0.922 19 C -0.149 4.149 20 N -0.545 5.545 21 Si 0.716 3.284 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.199 1.199 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.033 0.967 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.142 -0.089 11.705 14.852 hybrid contribution 0.094 -0.134 -0.362 0.397 sum -9.048 -0.222 11.343 14.511 Atomic orbital electron populations 1.21761 0.96132 1.01307 1.01622 1.21593 0.95579 0.97075 1.02184 1.21621 0.94318 0.96758 1.01895 1.22594 0.95276 0.96402 0.99328 0.87967 1.23494 0.99983 0.88934 0.90119 1.89048 1.83341 1.24657 1.32983 1.23487 0.97946 0.92218 0.88897 1.23037 0.94514 0.96081 0.91935 0.93408 1.62262 1.28007 1.31852 1.00715 1.22404 0.97722 0.89227 1.03153 1.21948 0.94252 0.95451 0.90560 0.91036 1.22516 1.00202 1.00873 1.00672 1.19206 0.93238 0.97740 0.90538 1.21143 1.17908 1.05263 1.08427 0.92244 1.25001 0.97534 0.96597 0.95729 1.69962 1.34775 1.36198 1.13516 0.86657 0.79677 0.83936 0.78093 1.21033 1.21563 1.19909 0.93014 0.92782 0.92984 0.92050 0.91611 0.91793 0.92107 0.89470 0.92121 0.89994 0.91057 0.92555 0.89933 0.96668 0.94240 0.92845 0.92599 0.96390 0.96225 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.13 -1.42 5.77 -26.73 -0.15 -1.57 16 3 C -0.11 -1.36 4.50 -26.73 -0.12 -1.48 16 4 C -0.12 -1.71 2.16 -89.06 -0.19 -1.91 16 5 H 0.10 1.73 6.97 -51.93 -0.36 1.37 16 6 C 0.05 0.72 7.03 37.93 0.27 0.98 16 7 O -0.38 -5.87 11.65 -35.23 -0.41 -6.29 16 8 C 0.05 0.76 6.14 37.93 0.23 0.99 16 9 C 0.05 0.83 2.28 -66.15 -0.15 0.68 16 10 H 0.05 0.73 6.18 -51.93 -0.32 0.41 16 11 N -0.50 -9.23 4.20 -225.03 -0.94 -10.17 16 12 C 0.02 0.39 8.08 60.07 0.49 0.88 16 13 C 0.09 1.68 2.06 -67.71 -0.14 1.54 16 14 H 0.07 1.43 6.53 -51.93 -0.34 1.09 16 15 C -0.18 -3.11 8.44 37.16 0.31 -2.79 16 16 C 0.03 0.74 4.39 -27.88 -0.12 0.62 16 17 C -0.49 -13.41 8.84 -34.43 -0.30 -13.71 16 18 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 19 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 20 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 21 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.64 6.48 -51.93 -0.34 0.31 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.05 6.21 -51.93 -0.32 0.73 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.11 7.45 -51.93 -0.39 0.72 16 36 H 0.06 0.87 6.94 -51.93 -0.36 0.51 16 37 H 0.08 1.60 6.02 -51.93 -0.31 1.29 16 38 H 0.01 0.23 6.89 -51.93 -0.36 -0.13 16 39 H 0.04 0.60 6.63 -51.93 -0.34 0.25 16 40 H 0.05 0.90 6.64 -51.93 -0.35 0.55 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.02 0.52 6.19 -51.93 -0.32 0.20 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 331.66 15.07 5.00 5.00 Total: -1.00 -29.29 331.66 -8.13 -37.42 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.88 Total: -1.02 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 0.39 Total: -15.53 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.21 Total: -36.43 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.41 Total: -6.29 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.29 -8.13 -37.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688237223.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.487 kcal (2) G-P(sol) polarization free energy of solvation -29.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds