Wall clock time and date at job start Mon Mar 30 2020 06:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47105 * 2 1 4 4 C 1.53001 * 109.47388 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.45537 * 56.14917 * 4 3 2 6 6 C 1.54476 * 110.51038 * 293.54623 * 4 3 2 7 7 O 1.44427 * 104.80301 * 265.33357 * 6 4 3 8 8 C 1.44428 * 105.27363 * 319.48586 * 7 6 4 9 9 C 1.54480 * 104.79784 * 40.51278 * 8 7 6 10 10 H 1.09004 * 110.50947 * 94.66796 * 9 8 7 11 11 N 1.46897 * 110.50754 * 217.37282 * 9 8 7 12 12 C 1.46905 * 111.00315 * 304.19542 * 11 9 8 13 13 C 1.46903 * 111.00342 * 180.24251 * 11 9 8 14 14 H 1.09002 * 109.46613 * 310.66073 * 13 11 9 15 15 C 1.53007 * 109.47058 * 70.65385 * 13 11 9 16 16 C 1.52996 * 109.47449 * 190.65775 * 13 11 9 17 17 C 1.50706 * 109.46756 * 65.00171 * 16 13 11 18 18 H 1.07989 * 120.00260 * 359.97438 * 17 16 13 19 19 C 1.37885 * 119.99634 * 179.97438 * 17 16 13 20 20 N 1.31514 * 119.99903 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99866 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47233 * 89.99862 * 21 19 17 23 23 H 1.48491 * 109.46968 * 209.99913 * 21 19 17 24 24 H 1.48499 * 109.47248 * 330.00009 * 21 19 17 25 25 H 1.09001 * 109.47336 * 300.00192 * 1 2 3 26 26 H 1.08999 * 109.46692 * 60.00565 * 1 2 3 27 27 H 1.09000 * 109.46491 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47206 * 119.99321 * 2 1 3 29 29 H 1.08991 * 109.47420 * 239.99996 * 2 1 3 30 30 H 1.08998 * 109.46923 * 300.00103 * 3 2 1 31 31 H 1.09001 * 109.47181 * 59.99713 * 3 2 1 32 32 H 1.09003 * 110.37415 * 24.16489 * 6 4 3 33 33 H 1.08997 * 110.37470 * 146.38942 * 6 4 3 34 34 H 1.09003 * 110.36994 * 159.34361 * 8 7 6 35 35 H 1.08996 * 110.36979 * 281.57508 * 8 7 6 36 36 H 1.09003 * 109.47130 * 66.76738 * 12 11 9 37 37 H 1.09003 * 109.47515 * 186.76877 * 12 11 9 38 38 H 1.08997 * 109.46637 * 306.76814 * 12 11 9 39 39 H 1.08996 * 109.47104 * 301.31485 * 15 13 11 40 40 H 1.08998 * 109.46655 * 61.31396 * 15 13 11 41 41 H 1.08997 * 109.46717 * 181.31173 * 15 13 11 42 42 H 1.08997 * 109.47057 * 184.99447 * 16 13 11 43 43 H 1.08995 * 109.47483 * 305.00032 * 16 13 11 44 44 H 0.97003 * 119.99689 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9514 0.8736 -0.8473 6 6 4.1108 0.8648 1.3273 7 8 4.3460 2.0186 2.1636 8 6 4.9152 3.0147 1.2862 9 6 4.1114 2.8894 -0.0270 10 1 3.2890 3.6047 -0.0412 11 7 4.9886 3.0886 -1.1884 12 6 5.6860 4.3789 -1.1062 13 6 4.2337 2.9774 -2.4437 14 1 3.6333 2.0677 -2.4271 15 6 3.3153 4.1917 -2.5959 16 6 5.2082 2.9240 -3.6219 17 6 6.0296 1.6633 -3.5376 18 1 5.8726 0.9698 -2.7248 19 6 6.9817 1.3953 -4.4983 20 7 7.1725 2.2396 -5.4884 21 14 8.0003 -0.1670 -4.3935 22 1 7.3106 -1.2579 -5.1279 23 1 9.3350 0.0708 -4.9994 24 1 8.1652 -0.5559 -2.9698 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.3704 0.2089 1.7853 33 1 5.0408 0.3235 1.1544 34 1 4.7927 4.0104 1.7126 35 1 5.9701 2.8058 1.1087 36 1 6.3832 4.3624 -0.2684 37 1 6.2342 4.5553 -2.0317 38 1 4.9581 5.1765 -0.9575 39 1 2.6365 4.2428 -1.7447 40 1 3.9172 5.0996 -2.6357 41 1 2.7382 4.0977 -3.5158 42 1 4.6483 2.9309 -4.5571 43 1 5.8682 3.7907 -3.5871 44 1 7.8420 2.0508 -6.1645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688237223.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:41 Heat of formation + Delta-G solvation = -77.594926 kcal Electronic energy + Delta-G solvation = -20638.820226 eV Core-core repulsion = 17782.811013 eV Total energy + Delta-G solvation = -2856.009213 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.12710 -38.51587 -36.15990 -34.97078 -32.87812 -31.69753 -29.23389 -29.10261 -27.09406 -26.54992 -25.09443 -23.48913 -21.92409 -21.20927 -19.88591 -18.39511 -17.85525 -17.22568 -16.70607 -16.38900 -15.96235 -15.62377 -14.99884 -14.85208 -14.74612 -14.22957 -13.98051 -13.66759 -13.65432 -13.48867 -13.22820 -12.97753 -12.84556 -12.78639 -12.51419 -12.39359 -12.22387 -12.08207 -12.03621 -11.75419 -11.67274 -11.29027 -11.18095 -11.08271 -10.97745 -10.65375 -10.46274 -8.92987 -8.09122 -6.13219 1.41262 1.42307 1.53246 2.47492 2.90398 3.21244 3.29989 3.56586 3.88462 3.95426 4.13482 4.19486 4.21202 4.37986 4.40665 4.42698 4.50640 4.54191 4.57912 4.70183 4.71619 4.78327 4.83330 4.88279 4.94191 5.00080 5.03472 5.09901 5.15304 5.16601 5.20142 5.26533 5.37419 5.43467 5.49001 5.52874 5.69314 5.82934 5.91337 6.31517 6.45691 6.53449 7.00677 7.52402 9.02928 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017145 B = 0.006628 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.777127 B = 4223.564874 C = 4479.012272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.101 4.101 4 C -0.115 4.115 5 H 0.075 0.925 6 C 0.053 3.947 7 O -0.388 6.388 8 C 0.055 3.945 9 C 0.056 3.944 10 H 0.058 0.942 11 N -0.524 5.524 12 C 0.027 3.973 13 C 0.098 3.902 14 H 0.066 0.934 15 C -0.174 4.174 16 C 0.035 3.965 17 C -0.494 4.494 18 H 0.057 0.943 19 C -0.004 4.004 20 N -0.940 5.940 21 Si 0.952 3.048 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.268 1.268 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.052 0.948 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.055 0.945 42 H -0.010 1.010 43 H -0.002 1.002 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.569 -0.235 13.493 17.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.138 4.138 4 C -0.135 4.135 5 H 0.093 0.907 6 C -0.024 4.024 7 O -0.307 6.307 8 C -0.022 4.022 9 C -0.053 4.053 10 H 0.076 0.924 11 N -0.249 5.249 12 C -0.121 4.121 13 C -0.010 4.010 14 H 0.084 0.916 15 C -0.233 4.233 16 C -0.002 4.002 17 C -0.533 4.533 18 H 0.076 0.924 19 C -0.200 4.200 20 N -0.583 5.583 21 Si 0.778 3.222 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.192 1.192 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.070 0.930 34 H 0.122 0.878 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.008 0.992 43 H 0.017 0.983 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.153 -0.571 13.601 16.982 hybrid contribution 0.410 0.025 -0.937 1.024 sum -9.743 -0.545 12.663 15.987 Atomic orbital electron populations 1.21741 0.94910 1.02047 1.01891 1.21581 0.96637 0.96055 1.02060 1.21559 0.92600 0.97759 1.01914 1.22554 0.96732 0.95524 0.98645 0.90701 1.23546 1.00218 0.88818 0.89784 1.89046 1.83306 1.25022 1.33317 1.23493 0.97083 0.93197 0.88475 1.23084 0.94407 0.96809 0.91023 0.92410 1.62134 1.28927 1.32801 1.01005 1.22341 0.98188 0.89431 1.02108 1.21580 0.93250 0.96668 0.89514 0.91563 1.22387 0.99894 0.99269 1.01764 1.19069 0.93460 0.95917 0.91745 1.21459 1.17913 1.05952 1.07967 0.92437 1.25818 0.98933 0.99748 0.95526 1.70090 1.35650 1.38129 1.14382 0.85635 0.77983 0.80217 0.78319 1.20228 1.21389 1.19201 0.92155 0.93104 0.92068 0.91125 0.92818 0.92478 0.91215 0.87278 0.92972 0.87845 0.92197 0.90982 0.93071 0.94602 0.91798 0.92902 0.92596 0.99174 0.98335 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.91 71.98 0.71 -1.86 16 2 C -0.13 -2.57 5.77 30.60 0.18 -2.39 16 3 C -0.10 -2.33 4.50 30.60 0.14 -2.19 16 4 C -0.12 -3.22 2.16 -9.78 -0.02 -3.24 16 5 H 0.07 2.53 6.97 -2.39 -0.02 2.51 16 6 C 0.05 1.37 7.03 72.48 0.51 1.88 16 7 O -0.39 -11.00 11.65 -148.98 -1.74 -12.74 16 8 C 0.05 1.48 6.14 72.49 0.45 1.93 16 9 C 0.06 1.62 2.28 45.93 0.10 1.73 16 10 H 0.06 1.60 6.18 -2.39 -0.01 1.58 16 11 N -0.52 -18.87 4.20 -865.85 -3.64 -22.51 16 12 C 0.03 0.91 8.08 127.69 1.03 1.94 16 13 C 0.10 3.86 2.06 44.92 0.09 3.95 16 14 H 0.07 2.67 6.53 -2.39 -0.02 2.65 16 15 C -0.17 -5.70 8.44 71.98 0.61 -5.09 16 16 C 0.04 1.81 4.39 29.85 0.13 1.94 16 17 C -0.49 -27.67 8.84 25.60 0.23 -27.45 16 18 H 0.06 3.18 7.74 -2.92 -0.02 3.16 16 19 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 20 N -0.94 -57.49 13.29 21.45 0.28 -57.20 16 21 Si 0.95 45.31 29.54 68.60 2.03 47.34 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 1.30 6.48 -2.39 -0.02 1.29 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.11 2.34 6.21 -2.39 -0.01 2.32 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.06 1.77 7.45 -2.39 -0.02 1.75 16 36 H 0.07 2.14 6.94 -2.39 -0.02 2.12 16 37 H 0.05 2.02 6.02 -2.39 -0.01 2.01 16 38 H 0.04 1.03 6.89 -2.39 -0.02 1.02 16 39 H 0.06 1.78 6.63 -2.39 -0.02 1.76 16 40 H 0.05 1.72 6.64 -2.39 -0.02 1.71 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 43 H 0.00 -0.09 6.19 -2.39 -0.01 -0.10 16 44 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -62.97 331.66 2.50 -60.47 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.94 Total: 13.30 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 4.62 Total: -28.65 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -3.35 Total: -79.71 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -1.74 Total: -12.74 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -62.97 2.50 -60.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688237223.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.128 kcal (2) G-P(sol) polarization free energy of solvation -62.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds