Wall clock time and date at job start Mon Mar 30 2020 07:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47299 * 2 1 4 4 H 1.09006 * 109.87429 * 306.01226 * 3 2 1 5 5 C 1.54095 * 109.88336 * 184.99760 * 3 2 1 6 6 C 1.54803 * 104.19080 * 238.39591 * 5 3 2 7 7 H 1.08999 * 110.90784 * 97.31866 * 6 5 3 8 8 N 1.46901 * 110.91159 * 220.91934 * 6 5 3 9 9 C 1.46898 * 111.00033 * 173.66383 * 8 6 5 10 10 C 1.46907 * 111.00037 * 297.62051 * 8 6 5 11 11 C 1.52993 * 109.47114 * 169.99707 * 10 8 6 12 12 C 1.52998 * 109.47195 * 179.97438 * 11 10 8 13 13 C 1.53007 * 109.47034 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46769 * 179.97438 * 13 12 11 15 15 H 1.08006 * 120.00338 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00059 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00211 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99727 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47209 * 89.99985 * 18 16 14 20 20 H 1.48509 * 109.47107 * 210.00227 * 18 16 14 21 21 H 1.48505 * 109.47285 * 330.00117 * 18 16 14 22 22 C 1.54991 * 102.09361 * 339.12089 * 6 5 3 23 23 O 1.43748 * 110.00371 * 67.09138 * 3 2 1 24 24 H 1.08999 * 109.47101 * 60.00057 * 1 2 3 25 25 H 1.09002 * 109.46910 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47357 * 299.99913 * 1 2 3 27 27 H 1.09000 * 109.47357 * 240.00087 * 2 1 3 28 28 H 1.09002 * 109.47503 * 120.00261 * 2 1 3 29 29 H 1.09008 * 110.48848 * 119.72099 * 5 3 2 30 30 H 1.09003 * 110.59994 * 357.13608 * 5 3 2 31 31 H 1.09000 * 109.47432 * 65.82628 * 9 8 6 32 32 H 1.09007 * 109.47116 * 185.82129 * 9 8 6 33 33 H 1.08996 * 109.47116 * 305.81765 * 9 8 6 34 34 H 1.09000 * 109.46747 * 289.99915 * 10 8 6 35 35 H 1.09002 * 109.47034 * 49.99740 * 10 8 6 36 36 H 1.09004 * 109.47231 * 300.00190 * 11 10 8 37 37 H 1.08998 * 109.47539 * 59.99815 * 11 10 8 38 38 H 1.08996 * 109.47390 * 299.99624 * 12 11 10 39 39 H 1.09002 * 109.46966 * 60.00026 * 12 11 10 40 40 H 1.08992 * 109.47052 * 299.99644 * 13 12 11 41 41 H 1.08993 * 109.46890 * 60.00214 * 13 12 11 42 42 H 0.96994 * 120.00126 * 179.97438 * 17 16 14 43 43 H 1.09000 * 110.61947 * 155.52414 * 22 6 5 44 44 H 1.09000 * 110.61688 * 278.51809 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5953 1.9928 -0.8292 5 6 3.5757 1.4553 -0.1262 6 6 4.0542 2.2075 1.1393 7 1 4.3462 1.5066 1.9213 8 7 5.1579 3.1227 0.8195 9 6 5.5135 3.9456 1.9832 10 6 6.3258 2.3846 0.3198 11 6 7.3547 3.3724 -0.2337 12 6 8.5713 2.6038 -0.7534 13 6 9.6000 3.5917 -1.3076 14 6 10.7985 2.8346 -1.8189 15 1 10.8238 1.7567 -1.7555 16 6 11.8628 3.5180 -2.3678 17 7 12.9085 2.8574 -2.8145 18 14 11.8194 5.3823 -2.4769 19 1 12.4033 5.9642 -1.2418 20 1 12.6071 5.8278 -3.6545 21 1 10.4131 5.8371 -2.6214 22 6 2.7837 2.9951 1.5488 23 8 1.7082 2.0813 1.2442 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8801 1.9903 -1.0259 30 1 3.9682 0.4385 -0.1371 31 1 5.9200 3.3082 2.7684 32 1 6.2606 4.6839 1.6915 33 1 4.6240 4.4554 2.3531 34 1 6.7713 1.8146 1.1351 35 1 6.0137 1.7034 -0.4718 36 1 6.9091 3.9425 -1.0489 37 1 7.6668 4.0537 0.5578 38 1 9.0167 2.0341 0.0621 39 1 8.2595 1.9223 -1.5449 40 1 9.1543 4.1610 -2.1232 41 1 9.9118 4.2734 -0.5164 42 1 13.6571 3.3381 -3.2010 43 1 2.8016 3.2255 2.6141 44 1 2.6909 3.9073 0.9594 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688527019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:21 Heat of formation + Delta-G solvation = -68.868791 kcal Electronic energy + Delta-G solvation = -19130.794416 eV Core-core repulsion = 16275.163596 eV Total energy + Delta-G solvation = -2855.630820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.09628 -37.38514 -34.54594 -33.78769 -32.33417 -31.00520 -29.36476 -27.76202 -26.40278 -24.04835 -23.41716 -21.36580 -21.24210 -20.20792 -19.97583 -16.87616 -16.60283 -16.36912 -15.84685 -15.08549 -14.90964 -14.28548 -14.15006 -13.99746 -13.61558 -13.50984 -13.27614 -12.73195 -12.68881 -12.34432 -11.99741 -11.89961 -11.75451 -11.63835 -11.36843 -11.15046 -11.04698 -10.94054 -10.76242 -10.71183 -10.46784 -9.88343 -9.84095 -9.66917 -9.47379 -9.14117 -8.51784 -8.44274 -6.02384 -3.99984 3.32110 3.39398 3.44029 3.49549 3.90748 4.30572 4.43773 4.47310 4.72080 4.88008 4.90675 5.00671 5.05830 5.18912 5.26445 5.32097 5.33080 5.42719 5.44429 5.51254 5.55296 5.62519 5.69935 5.74680 5.78354 5.81010 5.85489 5.93185 6.02113 6.04850 6.11177 6.38245 6.64077 6.65659 6.76853 6.89597 7.00148 7.07856 7.34982 7.48250 7.82797 8.56805 9.02858 9.60630 11.11268 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.037034 B = 0.003277 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.886252 B = 8541.264297 C = 8965.548734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.079 3.921 4 H 0.069 0.931 5 C -0.147 4.147 6 C 0.049 3.951 7 H 0.055 0.945 8 N -0.532 5.532 9 C 0.019 3.981 10 C 0.054 3.946 11 C -0.116 4.116 12 C -0.101 4.101 13 C -0.013 4.013 14 C -0.520 4.520 15 H 0.070 0.930 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.881 3.119 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.265 1.265 22 C 0.056 3.944 23 O -0.374 6.374 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.026 0.974 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.015 0.985 41 H 0.009 0.991 42 H 0.262 0.738 43 H 0.088 0.912 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.315 -1.701 8.515 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C 0.021 3.979 4 H 0.087 0.913 5 C -0.185 4.185 6 C -0.060 4.060 7 H 0.073 0.927 8 N -0.257 5.257 9 C -0.129 4.129 10 C -0.073 4.073 11 C -0.154 4.154 12 C -0.140 4.140 13 C -0.051 4.051 14 C -0.558 4.558 15 H 0.088 0.912 16 C -0.137 4.137 17 N -0.545 5.545 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.021 4.021 23 O -0.292 6.292 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.044 0.956 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.028 0.972 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.507 -1.412 8.182 24.931 hybrid contribution 0.745 0.452 0.434 0.974 sum -22.762 -0.960 8.616 24.357 Atomic orbital electron populations 1.21720 0.95367 1.01418 1.02206 1.21734 0.96739 0.94954 1.02637 1.22759 0.93952 0.93921 0.87264 0.91295 1.23068 0.94884 1.01306 0.99204 1.23175 0.92350 0.93864 0.96616 0.92715 1.62129 1.07795 1.23423 1.32378 1.22464 1.01392 0.97713 0.91329 1.22276 0.89899 0.96179 0.98925 1.21700 0.95243 0.97954 1.00512 1.21424 0.94258 0.98677 0.99595 1.19560 0.94646 0.95251 0.95614 1.21192 1.00086 0.95269 1.39238 0.91151 1.25054 0.95300 0.98395 0.94907 1.69919 1.07151 1.35802 1.41631 0.86759 0.78485 0.86288 0.77641 1.20370 1.21439 1.18948 1.23545 0.84611 0.93022 1.00905 1.88865 1.43327 1.57243 1.39809 0.92861 0.92873 0.92112 0.90731 0.91306 0.89208 0.90437 0.95567 0.90461 0.91697 0.94913 0.90708 0.91672 0.92532 0.93110 0.92859 0.96648 0.97241 0.92797 0.89368 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.83 37.15 0.37 -0.79 16 2 C -0.12 -1.01 5.43 -26.74 -0.15 -1.16 16 3 C 0.08 0.75 3.40 -26.16 -0.09 0.66 16 4 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 5 C -0.15 -1.45 5.07 -25.21 -0.13 -1.58 16 6 C 0.05 0.52 2.80 -65.71 -0.18 0.34 16 7 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 8 N -0.53 -6.33 4.60 -232.48 -1.07 -7.40 16 9 C 0.02 0.20 9.13 60.06 0.55 0.75 16 10 C 0.05 0.73 4.82 -3.82 -0.02 0.71 16 11 C -0.12 -1.85 5.14 -26.74 -0.14 -1.98 16 12 C -0.10 -1.99 5.15 -26.73 -0.14 -2.13 16 13 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 14 C -0.52 -15.07 9.66 -34.44 -0.33 -15.41 16 15 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 16 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 17 N -0.91 -28.33 13.96 55.43 0.77 -27.55 16 18 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 22 C 0.06 0.56 6.09 38.21 0.23 0.79 16 23 O -0.37 -4.15 10.85 -35.23 -0.38 -4.53 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.52 7.91 -51.93 -0.41 0.11 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.95 7.81 -51.92 -0.41 0.54 16 30 H 0.08 0.72 7.70 -51.93 -0.40 0.32 16 31 H 0.03 0.27 8.13 -51.93 -0.42 -0.15 16 32 H 0.08 0.87 6.56 -51.92 -0.34 0.53 16 33 H 0.06 0.58 6.83 -51.93 -0.35 0.23 16 34 H 0.03 0.44 8.11 -51.93 -0.42 0.02 16 35 H 0.07 0.98 6.79 -51.93 -0.35 0.63 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.88 6.59 -51.93 -0.34 0.54 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 41 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.09 0.77 7.89 -51.93 -0.41 0.36 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 340.49 15.07 5.13 5.13 Total: -1.00 -30.91 340.49 -8.89 -39.81 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -8.44 Total: -4.39 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -0.24 Total: -18.43 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: -0.30 Total: -34.95 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.38 Total: -4.53 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.91 -8.89 -39.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688527019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.063 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds