Wall clock time and date at job start Mon Mar 30 2020 07:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47299 * 2 1 4 4 H 1.09006 * 109.87429 * 306.01226 * 3 2 1 5 5 C 1.54095 * 109.88336 * 184.99760 * 3 2 1 6 6 C 1.54803 * 104.19080 * 238.39591 * 5 3 2 7 7 H 1.08999 * 110.90784 * 97.31866 * 6 5 3 8 8 N 1.46901 * 110.91159 * 220.91934 * 6 5 3 9 9 C 1.46898 * 111.00033 * 173.66383 * 8 6 5 10 10 C 1.46907 * 111.00037 * 297.62051 * 8 6 5 11 11 C 1.52993 * 109.47114 * 169.99707 * 10 8 6 12 12 C 1.52998 * 109.47195 * 179.97438 * 11 10 8 13 13 C 1.53007 * 109.47034 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46769 * 179.97438 * 13 12 11 15 15 H 1.08006 * 120.00338 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00059 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00211 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99727 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47209 * 89.99985 * 18 16 14 20 20 H 1.48509 * 109.47107 * 210.00227 * 18 16 14 21 21 H 1.48505 * 109.47285 * 330.00117 * 18 16 14 22 22 C 1.54991 * 102.09361 * 339.12089 * 6 5 3 23 23 O 1.43748 * 110.00371 * 67.09138 * 3 2 1 24 24 H 1.08999 * 109.47101 * 60.00057 * 1 2 3 25 25 H 1.09002 * 109.46910 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47357 * 299.99913 * 1 2 3 27 27 H 1.09000 * 109.47357 * 240.00087 * 2 1 3 28 28 H 1.09002 * 109.47503 * 120.00261 * 2 1 3 29 29 H 1.09008 * 110.48848 * 119.72099 * 5 3 2 30 30 H 1.09003 * 110.59994 * 357.13608 * 5 3 2 31 31 H 1.09000 * 109.47432 * 65.82628 * 9 8 6 32 32 H 1.09007 * 109.47116 * 185.82129 * 9 8 6 33 33 H 1.08996 * 109.47116 * 305.81765 * 9 8 6 34 34 H 1.09000 * 109.46747 * 289.99915 * 10 8 6 35 35 H 1.09002 * 109.47034 * 49.99740 * 10 8 6 36 36 H 1.09004 * 109.47231 * 300.00190 * 11 10 8 37 37 H 1.08998 * 109.47539 * 59.99815 * 11 10 8 38 38 H 1.08996 * 109.47390 * 299.99624 * 12 11 10 39 39 H 1.09002 * 109.46966 * 60.00026 * 12 11 10 40 40 H 1.08992 * 109.47052 * 299.99644 * 13 12 11 41 41 H 1.08993 * 109.46890 * 60.00214 * 13 12 11 42 42 H 0.96994 * 120.00126 * 179.97438 * 17 16 14 43 43 H 1.09000 * 110.61947 * 155.52414 * 22 6 5 44 44 H 1.09000 * 110.61688 * 278.51809 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5953 1.9928 -0.8292 5 6 3.5757 1.4553 -0.1262 6 6 4.0542 2.2075 1.1393 7 1 4.3462 1.5066 1.9213 8 7 5.1579 3.1227 0.8195 9 6 5.5135 3.9456 1.9832 10 6 6.3258 2.3846 0.3198 11 6 7.3547 3.3724 -0.2337 12 6 8.5713 2.6038 -0.7534 13 6 9.6000 3.5917 -1.3076 14 6 10.7985 2.8346 -1.8189 15 1 10.8238 1.7567 -1.7555 16 6 11.8628 3.5180 -2.3678 17 7 12.9085 2.8574 -2.8145 18 14 11.8194 5.3823 -2.4769 19 1 12.4033 5.9642 -1.2418 20 1 12.6071 5.8278 -3.6545 21 1 10.4131 5.8371 -2.6214 22 6 2.7837 2.9951 1.5488 23 8 1.7082 2.0813 1.2442 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8801 1.9903 -1.0259 30 1 3.9682 0.4385 -0.1371 31 1 5.9200 3.3082 2.7684 32 1 6.2606 4.6839 1.6915 33 1 4.6240 4.4554 2.3531 34 1 6.7713 1.8146 1.1351 35 1 6.0137 1.7034 -0.4718 36 1 6.9091 3.9425 -1.0489 37 1 7.6668 4.0537 0.5578 38 1 9.0167 2.0341 0.0621 39 1 8.2595 1.9223 -1.5449 40 1 9.1543 4.1610 -2.1232 41 1 9.9118 4.2734 -0.5164 42 1 13.6571 3.3381 -3.2010 43 1 2.8016 3.2255 2.6141 44 1 2.6909 3.9073 0.9594 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688527019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:21 Heat of formation + Delta-G solvation = -88.076222 kcal Electronic energy + Delta-G solvation = -19131.627312 eV Core-core repulsion = 16275.163596 eV Total energy + Delta-G solvation = -2856.463716 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.90340 -38.38098 -36.17508 -34.54429 -34.23633 -32.02588 -30.75415 -28.67714 -27.59114 -25.52390 -24.13439 -22.76081 -21.98839 -21.64371 -21.09265 -18.86058 -17.67394 -17.18597 -16.60463 -16.35973 -16.31520 -15.80396 -15.20953 -14.91733 -14.76224 -14.34472 -14.26443 -14.22846 -13.76550 -13.71196 -13.45174 -13.09640 -12.78401 -12.68994 -12.49014 -12.29636 -12.16952 -11.93757 -11.88950 -11.72371 -11.68322 -11.48973 -11.32853 -11.27555 -11.15017 -10.76283 -10.62897 -9.36813 -8.29666 -6.33746 1.35829 1.38004 1.50562 2.36599 2.66574 3.05765 3.05885 3.53014 3.71167 3.96976 4.02859 4.10907 4.19120 4.21691 4.26189 4.40857 4.49286 4.53015 4.54368 4.63486 4.65804 4.74854 4.79878 4.83528 4.87364 4.87956 4.99388 5.06265 5.08835 5.10861 5.15306 5.18366 5.26001 5.27537 5.42920 5.57874 5.65078 5.68615 5.86993 6.03306 6.14957 6.29455 6.74689 7.31128 8.87369 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.037034 B = 0.003277 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.886252 B = 8541.264297 C = 8965.548734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.078 3.922 4 H 0.071 0.929 5 C -0.145 4.145 6 C 0.050 3.950 7 H 0.053 0.947 8 N -0.536 5.536 9 C 0.017 3.983 10 C 0.062 3.938 11 C -0.104 4.104 12 C -0.095 4.095 13 C -0.012 4.012 14 C -0.535 4.535 15 H 0.029 0.971 16 C 0.000 4.000 17 N -0.954 5.954 18 Si 0.954 3.046 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.246 1.246 22 C 0.059 3.941 23 O -0.388 6.388 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.027 0.973 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.019 0.981 41 H 0.017 0.983 42 H 0.266 0.734 43 H 0.101 0.899 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.952 -0.265 9.104 26.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C 0.020 3.980 4 H 0.089 0.911 5 C -0.183 4.183 6 C -0.059 4.059 7 H 0.071 0.929 8 N -0.262 5.262 9 C -0.131 4.131 10 C -0.066 4.066 11 C -0.142 4.142 12 C -0.133 4.133 13 C -0.049 4.049 14 C -0.573 4.573 15 H 0.048 0.952 16 C -0.196 4.196 17 N -0.595 5.595 18 Si 0.777 3.223 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.169 1.169 22 C -0.018 4.018 23 O -0.307 6.307 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.049 0.951 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.168 0.017 8.785 26.657 hybrid contribution 1.266 -0.095 0.251 1.294 sum -23.902 -0.078 9.036 25.553 Atomic orbital electron populations 1.21703 0.95009 1.02008 1.01818 1.21746 0.97051 0.94161 1.02998 1.22835 0.93690 0.94620 0.86848 0.91129 1.23054 0.95187 1.01417 0.98607 1.23185 0.92114 0.93796 0.96843 0.92923 1.62087 1.07329 1.23521 1.33226 1.22524 1.02176 0.97494 0.90902 1.22090 0.89977 0.95526 0.98968 1.21512 0.94090 0.97962 1.00592 1.21291 0.94846 0.97957 0.99186 1.19531 0.93778 0.95775 0.95814 1.21575 1.02265 0.93983 1.39431 0.95215 1.26084 0.94707 1.04408 0.94409 1.70076 1.08197 1.38278 1.42914 0.85604 0.79581 0.79026 0.78110 1.19106 1.20967 1.16900 1.23571 0.83878 0.92632 1.01703 1.88857 1.43855 1.57580 1.40426 0.92467 0.91828 0.93251 0.89572 0.91718 0.89860 0.89955 0.95421 0.90983 0.89906 0.95071 0.90513 0.91714 0.91935 0.93675 0.93393 0.96292 0.96482 0.92514 0.88071 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.83 71.98 0.71 -1.37 16 2 C -0.12 -1.83 5.43 30.59 0.17 -1.66 16 3 C 0.08 1.37 3.40 30.96 0.11 1.48 16 4 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 5 C -0.14 -2.64 5.07 31.58 0.16 -2.48 16 6 C 0.05 0.96 2.80 46.21 0.13 1.09 16 7 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 8 N -0.54 -11.67 4.60 -889.42 -4.10 -15.77 16 9 C 0.02 0.32 9.13 127.69 1.17 1.49 16 10 C 0.06 1.56 4.82 86.30 0.42 1.97 16 11 C -0.10 -3.11 5.14 30.59 0.16 -2.95 16 12 C -0.09 -3.66 5.15 30.60 0.16 -3.50 16 13 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 14 C -0.53 -31.53 9.66 25.60 0.25 -31.28 16 15 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 16 C 0.00 0.01 5.47 84.66 0.46 0.48 16 17 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 18 Si 0.95 44.86 27.47 68.60 1.88 46.74 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 22 C 0.06 1.06 6.09 72.66 0.44 1.50 16 23 O -0.39 -8.03 10.85 -148.98 -1.62 -9.65 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.80 7.91 -2.39 -0.02 0.78 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.64 7.81 -2.38 -0.02 1.62 16 30 H 0.08 1.41 7.70 -2.39 -0.02 1.39 16 31 H 0.03 0.52 8.13 -2.39 -0.02 0.50 16 32 H 0.07 1.45 6.56 -2.38 -0.02 1.43 16 33 H 0.08 1.27 6.83 -2.39 -0.02 1.25 16 34 H 0.03 0.79 8.11 -2.39 -0.02 0.78 16 35 H 0.08 1.89 6.79 -2.39 -0.02 1.88 16 36 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.06 1.81 6.59 -2.39 -0.02 1.79 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 41 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 42 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 43 H 0.10 1.52 7.89 -2.39 -0.02 1.51 16 44 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -66.34 340.49 1.78 -64.57 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.86 Total: 10.35 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 4.44 Total: -35.67 kcal Atomic # 7 Polarization: -72.54 SS G_CDS: -3.80 Total: -76.34 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -1.62 Total: -9.65 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -66.34 1.78 -64.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688527019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.510 kcal (2) G-P(sol) polarization free energy of solvation -66.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds