Wall clock time and date at job start Mon Mar 30 2020 07:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 H 1.09001 * 110.27416 * 52.90702 * 3 2 1 5 5 C 1.54947 * 110.31393 * 174.99785 * 3 2 1 6 6 C 1.55301 * 100.94574 * 155.45788 * 5 3 2 7 7 H 1.09000 * 110.84555 * 84.26139 * 6 5 3 8 8 N 1.46896 * 110.85021 * 207.68012 * 6 5 3 9 9 C 1.46907 * 110.99805 * 303.95219 * 8 6 5 10 10 C 1.46899 * 111.00152 * 180.02562 * 8 6 5 11 11 C 1.52997 * 109.47254 * 189.99788 * 10 8 6 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00129 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99861 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00346 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99914 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47008 * 59.99580 * 18 16 14 20 20 H 1.48503 * 109.47134 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46873 * 299.99710 * 18 16 14 22 22 C 1.54384 * 102.25287 * 325.87038 * 6 5 3 23 23 O 1.43232 * 107.58870 * 21.35515 * 22 6 5 24 24 H 1.08998 * 109.46628 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47252 * 300.00417 * 1 2 3 26 26 H 1.08994 * 109.46867 * 60.00306 * 1 2 3 27 27 H 1.09000 * 109.47529 * 239.99979 * 2 1 3 28 28 H 1.09003 * 109.47120 * 119.99650 * 2 1 3 29 29 H 1.09003 * 111.12036 * 37.53728 * 5 3 2 30 30 H 1.08995 * 111.16278 * 273.39765 * 5 3 2 31 31 H 1.08995 * 109.47407 * 296.04618 * 9 8 6 32 32 H 1.09006 * 109.46770 * 56.04664 * 9 8 6 33 33 H 1.09003 * 109.46848 * 176.04346 * 9 8 6 34 34 H 1.09002 * 109.47043 * 309.99859 * 10 8 6 35 35 H 1.09001 * 109.47354 * 69.99921 * 10 8 6 36 36 H 1.09002 * 109.47153 * 300.00004 * 11 10 8 37 37 H 1.08998 * 109.47533 * 59.99633 * 11 10 8 38 38 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 39 39 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 40 40 H 1.09002 * 109.47153 * 300.00216 * 13 12 11 41 41 H 1.09001 * 109.47289 * 60.00300 * 13 12 11 42 42 H 0.96993 * 120.00442 * 180.02562 * 17 16 14 43 43 H 1.08996 * 109.83294 * 140.86903 * 22 6 5 44 44 H 1.08997 * 109.82692 * 261.84234 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5845 2.0041 0.8156 5 6 3.5841 1.4672 0.1267 6 6 3.9113 2.8397 -0.5221 7 1 3.8123 3.6458 0.2049 8 7 5.2571 2.8321 -1.1109 9 6 6.2678 2.4666 -0.1094 10 6 5.5703 4.1293 -1.7251 11 6 6.8613 4.0104 -2.5376 12 6 7.1872 5.3612 -3.1778 13 6 8.4785 5.2425 -3.9897 14 6 8.7999 6.5732 -4.6198 15 1 8.1480 7.4189 -4.4577 16 6 9.9255 6.7107 -5.4041 17 7 10.7190 5.6808 -5.6019 18 14 10.3235 8.3600 -6.1857 19 1 10.4997 9.3819 -5.1227 20 1 11.5769 8.2448 -6.9737 21 1 9.2104 8.7646 -7.0816 22 6 2.8317 2.9487 -1.6203 23 8 1.7569 2.0736 -1.2590 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.0373 0.6496 -0.4339 30 1 3.8936 1.4427 1.1715 31 1 6.2963 3.2259 0.6720 32 1 6.0118 1.5024 0.3300 33 1 7.2452 2.4001 -0.5873 34 1 4.7533 4.4267 -2.3825 35 1 5.7000 4.8790 -0.9446 36 1 7.6782 3.7130 -1.8801 37 1 6.7317 3.2607 -3.3180 38 1 6.3701 5.6582 -3.8353 39 1 7.3168 6.1112 -2.3976 40 1 9.2954 4.9456 -3.3319 41 1 8.3495 4.4924 -4.7700 42 1 11.5111 5.7776 -6.1533 43 1 2.4686 3.9746 -1.6814 44 1 3.2490 2.6451 -2.5803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688527021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:24 Heat of formation + Delta-G solvation = -72.143133 kcal Electronic energy + Delta-G solvation = -19026.767016 eV Core-core repulsion = 16170.994211 eV Total energy + Delta-G solvation = -2855.772806 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.04873 -37.32025 -34.41827 -33.80210 -32.39926 -30.80475 -28.71312 -28.37170 -25.81744 -24.04117 -23.60924 -21.38418 -21.24469 -20.09752 -19.86786 -17.27656 -16.46132 -16.15090 -15.30428 -15.08814 -14.78850 -14.39534 -14.28280 -14.00418 -13.63133 -13.43710 -13.21962 -12.59930 -12.51078 -12.16472 -11.88730 -11.78773 -11.74975 -11.39572 -11.32369 -11.21793 -11.02366 -10.90863 -10.77359 -10.48678 -10.46855 -10.32987 -9.63305 -9.59742 -9.24897 -9.00387 -8.39061 -8.31149 -5.96488 -3.98776 3.34968 3.39143 3.41691 3.54171 3.85591 4.20248 4.48494 4.51452 4.77060 4.87322 4.93598 4.98619 5.10824 5.17309 5.30381 5.33319 5.38944 5.47870 5.50532 5.55484 5.62035 5.63702 5.68882 5.77078 5.83285 5.86663 5.93680 5.96960 6.05646 6.13681 6.24416 6.52190 6.80205 6.87713 6.96727 7.03837 7.05044 7.23573 7.71997 7.88126 8.04495 8.47253 9.08521 9.64934 11.14844 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.050909 B = 0.002937 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.867612 B = 9532.050834 C = 9773.811509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.081 3.919 4 H 0.067 0.933 5 C -0.145 4.145 6 C 0.048 3.952 7 H 0.054 0.946 8 N -0.531 5.531 9 C 0.021 3.979 10 C 0.053 3.947 11 C -0.113 4.113 12 C -0.109 4.109 13 C 0.022 3.978 14 C -0.521 4.521 15 H 0.053 0.947 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.059 3.941 23 O -0.377 6.377 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.024 0.976 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.032 0.968 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.014 0.986 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.066 0.934 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.880 -10.251 14.073 24.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C 0.023 3.977 4 H 0.085 0.915 5 C -0.183 4.183 6 C -0.061 4.061 7 H 0.072 0.928 8 N -0.255 5.255 9 C -0.127 4.127 10 C -0.074 4.074 11 C -0.151 4.151 12 C -0.147 4.147 13 C -0.015 4.015 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.018 4.018 23 O -0.296 6.296 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.898 -10.692 13.491 24.122 hybrid contribution 0.591 1.658 0.330 1.791 sum -16.308 -9.034 13.821 23.207 Atomic orbital electron populations 1.21722 0.95340 1.01451 1.02219 1.21661 0.96723 0.94846 1.02701 1.22957 0.93897 0.93957 0.86873 0.91468 1.23384 0.95567 0.97871 1.01430 1.23169 0.90457 0.97057 0.95397 0.92817 1.62133 1.00545 1.31442 1.31420 1.22453 0.96496 0.99916 0.93822 1.22318 0.99591 0.88032 0.97507 1.21665 0.94751 0.99769 0.98909 1.21599 1.00368 0.94065 0.98710 1.19079 0.91035 0.96885 0.94518 1.21252 1.08274 0.96510 1.29857 0.92842 1.25034 0.96374 0.96533 0.96587 1.69953 1.14444 1.29899 1.39283 0.86671 0.77621 0.84370 0.79404 1.20302 1.21301 1.20245 1.23145 0.86246 0.93857 0.98534 1.88419 1.42566 1.60598 1.38044 0.92837 0.92986 0.91984 0.90991 0.90913 0.89092 0.90310 0.95789 0.91604 0.90357 0.90931 0.94996 0.92503 0.91624 0.93444 0.93731 0.96776 0.96599 0.92988 0.91607 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.85 37.16 0.37 -0.78 16 2 C -0.12 -0.97 5.67 -26.73 -0.15 -1.12 16 3 C 0.08 0.76 3.40 -25.70 -0.09 0.67 16 4 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 5 C -0.14 -1.33 4.65 -24.48 -0.11 -1.44 16 6 C 0.05 0.53 2.68 -65.77 -0.18 0.35 16 7 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 8 N -0.53 -6.71 4.58 -232.54 -1.07 -7.77 16 9 C 0.02 0.24 9.09 60.07 0.55 0.79 16 10 C 0.05 0.75 4.86 -3.83 -0.02 0.73 16 11 C -0.11 -1.94 5.14 -26.74 -0.14 -2.07 16 12 C -0.11 -2.26 5.15 -26.74 -0.14 -2.40 16 13 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 14 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 18 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 C 0.06 0.69 6.38 37.88 0.24 0.93 16 23 O -0.38 -4.54 10.81 -35.23 -0.38 -4.93 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.55 7.99 -51.93 -0.42 0.13 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.90 8.00 -51.93 -0.42 0.48 16 30 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.64 6.81 -51.93 -0.35 0.28 16 33 H 0.08 0.96 6.47 -51.93 -0.34 0.62 16 34 H 0.07 1.00 7.11 -51.93 -0.37 0.63 16 35 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 36 H 0.06 0.97 6.55 -51.93 -0.34 0.63 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.07 7.99 -51.93 -0.42 0.65 16 LS Contribution 344.97 15.07 5.20 5.20 Total: -1.00 -30.62 344.97 -9.27 -39.89 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -8.52 Total: -4.93 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -0.22 Total: -17.74 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: -0.33 Total: -34.43 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.38 Total: -4.93 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.62 -9.27 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688527021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.248 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds