Wall clock time and date at job start Mon Mar 30 2020 07:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 H 1.09001 * 110.27416 * 52.90702 * 3 2 1 5 5 C 1.54947 * 110.31393 * 174.99785 * 3 2 1 6 6 C 1.55301 * 100.94574 * 155.45788 * 5 3 2 7 7 H 1.09000 * 110.84555 * 84.26139 * 6 5 3 8 8 N 1.46896 * 110.85021 * 207.68012 * 6 5 3 9 9 C 1.46907 * 110.99805 * 303.95219 * 8 6 5 10 10 C 1.46899 * 111.00152 * 180.02562 * 8 6 5 11 11 C 1.52997 * 109.47254 * 189.99788 * 10 8 6 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00129 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99861 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00346 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99914 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47008 * 59.99580 * 18 16 14 20 20 H 1.48503 * 109.47134 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46873 * 299.99710 * 18 16 14 22 22 C 1.54384 * 102.25287 * 325.87038 * 6 5 3 23 23 O 1.43232 * 107.58870 * 21.35515 * 22 6 5 24 24 H 1.08998 * 109.46628 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47252 * 300.00417 * 1 2 3 26 26 H 1.08994 * 109.46867 * 60.00306 * 1 2 3 27 27 H 1.09000 * 109.47529 * 239.99979 * 2 1 3 28 28 H 1.09003 * 109.47120 * 119.99650 * 2 1 3 29 29 H 1.09003 * 111.12036 * 37.53728 * 5 3 2 30 30 H 1.08995 * 111.16278 * 273.39765 * 5 3 2 31 31 H 1.08995 * 109.47407 * 296.04618 * 9 8 6 32 32 H 1.09006 * 109.46770 * 56.04664 * 9 8 6 33 33 H 1.09003 * 109.46848 * 176.04346 * 9 8 6 34 34 H 1.09002 * 109.47043 * 309.99859 * 10 8 6 35 35 H 1.09001 * 109.47354 * 69.99921 * 10 8 6 36 36 H 1.09002 * 109.47153 * 300.00004 * 11 10 8 37 37 H 1.08998 * 109.47533 * 59.99633 * 11 10 8 38 38 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 39 39 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 40 40 H 1.09002 * 109.47153 * 300.00216 * 13 12 11 41 41 H 1.09001 * 109.47289 * 60.00300 * 13 12 11 42 42 H 0.96993 * 120.00442 * 180.02562 * 17 16 14 43 43 H 1.08996 * 109.83294 * 140.86903 * 22 6 5 44 44 H 1.08997 * 109.82692 * 261.84234 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5845 2.0041 0.8156 5 6 3.5841 1.4672 0.1267 6 6 3.9113 2.8397 -0.5221 7 1 3.8123 3.6458 0.2049 8 7 5.2571 2.8321 -1.1109 9 6 6.2678 2.4666 -0.1094 10 6 5.5703 4.1293 -1.7251 11 6 6.8613 4.0104 -2.5376 12 6 7.1872 5.3612 -3.1778 13 6 8.4785 5.2425 -3.9897 14 6 8.7999 6.5732 -4.6198 15 1 8.1480 7.4189 -4.4577 16 6 9.9255 6.7107 -5.4041 17 7 10.7190 5.6808 -5.6019 18 14 10.3235 8.3600 -6.1857 19 1 10.4997 9.3819 -5.1227 20 1 11.5769 8.2448 -6.9737 21 1 9.2104 8.7646 -7.0816 22 6 2.8317 2.9487 -1.6203 23 8 1.7569 2.0736 -1.2590 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.0373 0.6496 -0.4339 30 1 3.8936 1.4427 1.1715 31 1 6.2963 3.2259 0.6720 32 1 6.0118 1.5024 0.3300 33 1 7.2452 2.4001 -0.5873 34 1 4.7533 4.4267 -2.3825 35 1 5.7000 4.8790 -0.9446 36 1 7.6782 3.7130 -1.8801 37 1 6.7317 3.2607 -3.3180 38 1 6.3701 5.6582 -3.8353 39 1 7.3168 6.1112 -2.3976 40 1 9.2954 4.9456 -3.3319 41 1 8.3495 4.4924 -4.7700 42 1 11.5111 5.7776 -6.1533 43 1 2.4686 3.9746 -1.6814 44 1 3.2490 2.6451 -2.5803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688527021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:24 Heat of formation + Delta-G solvation = -90.525539 kcal Electronic energy + Delta-G solvation = -19027.564137 eV Core-core repulsion = 16170.994211 eV Total energy + Delta-G solvation = -2856.569927 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89661 -38.37868 -36.16815 -34.50389 -34.26228 -31.94372 -30.02555 -29.41702 -27.20605 -25.50840 -24.44024 -22.87305 -21.98444 -21.63057 -20.89926 -18.43123 -18.09102 -17.30610 -16.56770 -16.37514 -16.10174 -15.67590 -15.38528 -14.95990 -14.49374 -14.38072 -14.19737 -14.09936 -13.75270 -13.65526 -13.26854 -13.06253 -12.79963 -12.53935 -12.51276 -12.34357 -12.27593 -12.15404 -12.00129 -11.90149 -11.67897 -11.49844 -11.32805 -11.27064 -10.96751 -10.55091 -10.46635 -9.36143 -8.19873 -6.31472 1.39238 1.42719 1.50660 2.40649 2.66986 2.99324 3.12682 3.39641 3.79677 3.98785 4.01797 4.10240 4.16573 4.21170 4.29699 4.41803 4.49563 4.54569 4.55419 4.61267 4.68327 4.76485 4.81714 4.83870 4.86924 4.91485 4.97912 5.05908 5.10722 5.12942 5.21421 5.27512 5.30594 5.36413 5.44536 5.54898 5.77350 5.86684 6.00906 6.06835 6.13451 6.25915 6.85949 7.37767 8.91847 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.050909 B = 0.002937 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.867612 B = 9532.050834 C = 9773.811509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.076 3.924 4 H 0.078 0.922 5 C -0.137 4.137 6 C 0.050 3.950 7 H 0.062 0.938 8 N -0.541 5.541 9 C 0.021 3.979 10 C 0.063 3.937 11 C -0.102 4.102 12 C -0.097 4.097 13 C 0.024 3.976 14 C -0.545 4.545 15 H 0.060 0.940 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.266 1.266 22 C 0.059 3.941 23 O -0.396 6.396 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.030 0.970 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.050 0.950 40 H -0.011 1.011 41 H -0.012 1.012 42 H 0.264 0.736 43 H 0.070 0.930 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.835 -9.693 15.387 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C 0.019 3.981 4 H 0.096 0.904 5 C -0.174 4.174 6 C -0.059 4.059 7 H 0.080 0.920 8 N -0.266 5.266 9 C -0.127 4.127 10 C -0.064 4.064 11 C -0.140 4.140 12 C -0.135 4.135 13 C -0.013 4.013 14 C -0.583 4.583 15 H 0.078 0.922 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.191 1.191 22 C -0.018 4.018 23 O -0.316 6.316 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.008 0.992 41 H 0.007 0.993 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.871 -10.140 14.821 25.335 hybrid contribution 0.880 1.422 -0.071 1.674 sum -16.991 -8.718 14.750 24.130 Atomic orbital electron populations 1.21712 0.95157 1.02029 1.01738 1.21683 0.96888 0.94056 1.03169 1.23164 0.94167 0.94680 0.86099 0.90383 1.23360 0.95310 0.96368 1.02390 1.23189 0.89010 0.98476 0.95234 0.92014 1.62053 1.01745 1.30342 1.32470 1.22481 0.95503 1.01163 0.93535 1.22092 0.97747 0.89194 0.97416 1.21477 0.96601 0.97165 0.98777 1.21399 0.97453 0.96363 0.98259 1.19007 0.93077 0.95312 0.93927 1.21717 1.08750 0.97559 1.30306 0.92187 1.26028 0.96156 1.00790 0.97098 1.70094 1.14982 1.32390 1.40023 0.85489 0.77631 0.79238 0.78621 1.19078 1.20790 1.19136 1.23104 0.86559 0.94025 0.98143 1.88406 1.42842 1.60902 1.39470 0.91777 0.92136 0.93761 0.92105 0.88822 0.89810 0.88122 0.95097 0.89671 0.91729 0.90616 0.94400 0.92671 0.92791 0.93078 0.93135 0.99242 0.99331 0.92761 0.91157 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.85 71.98 0.71 -1.34 16 2 C -0.12 -1.71 5.67 30.60 0.17 -1.53 16 3 C 0.08 1.28 3.40 31.26 0.11 1.39 16 4 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 5 C -0.14 -2.19 4.65 32.05 0.15 -2.04 16 6 C 0.05 1.00 2.68 46.18 0.12 1.12 16 7 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 8 N -0.54 -12.95 4.58 -889.63 -4.08 -17.03 16 9 C 0.02 0.44 9.09 127.69 1.16 1.60 16 10 C 0.06 1.72 4.86 86.30 0.42 2.14 16 11 C -0.10 -3.51 5.14 30.59 0.16 -3.35 16 12 C -0.10 -4.02 5.15 30.59 0.16 -3.86 16 13 C 0.02 1.30 4.97 29.85 0.15 1.45 16 14 C -0.55 -31.82 9.11 25.60 0.23 -31.58 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 16 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 17 N -0.93 -58.13 13.29 21.45 0.28 -57.84 16 18 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 C 0.06 1.32 6.38 72.45 0.46 1.78 16 23 O -0.40 -9.22 10.81 -148.98 -1.61 -10.83 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.04 0.76 7.99 -2.39 -0.02 0.74 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.49 8.00 -2.39 -0.02 1.47 16 30 H 0.10 1.19 8.08 -2.39 -0.02 1.17 16 31 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 1.44 6.81 -2.38 -0.02 1.43 16 33 H 0.06 1.53 6.47 -2.39 -0.02 1.52 16 34 H 0.08 2.01 7.11 -2.39 -0.02 2.00 16 35 H 0.04 0.99 8.12 -2.39 -0.02 0.97 16 36 H 0.05 1.90 6.55 -2.39 -0.02 1.88 16 37 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 41 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 42 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 43 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.07 1.72 7.99 -2.39 -0.02 1.70 16 Total: -1.00 -66.04 344.97 2.00 -64.04 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.91 Total: 8.71 kcal Atomic # 6 Polarization: -38.43 SS G_CDS: 4.46 Total: -33.97 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -3.79 Total: -74.87 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -1.61 Total: -10.83 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.04 2.00 -64.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688527021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.486 kcal (2) G-P(sol) polarization free energy of solvation -66.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds