Wall clock time and date at job start Mon Mar 30 2020 07:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47011 * 2 1 4 4 H 1.08998 * 110.55284 * 307.87743 * 3 2 1 5 5 C 1.54997 * 110.61939 * 184.99892 * 3 2 1 6 6 C 1.54802 * 102.09528 * 204.47810 * 5 3 2 7 7 H 1.09006 * 110.48896 * 262.20378 * 6 5 3 8 8 N 1.46897 * 110.49155 * 139.56024 * 6 5 3 9 9 C 1.46900 * 111.00611 * 181.64492 * 8 6 5 10 10 C 1.46903 * 111.00198 * 57.68697 * 8 6 5 11 11 C 1.52999 * 109.47047 * 190.00510 * 10 8 6 12 12 C 1.53003 * 109.47250 * 180.02562 * 11 10 8 13 13 C 1.52989 * 109.47499 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47179 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00153 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00023 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99586 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00039 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47028 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.46692 * 119.99905 * 18 16 14 21 21 H 1.48499 * 109.46831 * 239.99810 * 18 16 14 22 22 C 1.54097 * 104.18874 * 20.87653 * 6 5 3 23 23 O 1.43744 * 107.42294 * 1.96068 * 22 6 5 24 24 H 1.09008 * 109.46915 * 299.99819 * 1 2 3 25 25 H 1.08997 * 109.47298 * 59.99881 * 1 2 3 26 26 H 1.08996 * 109.47279 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46971 * 240.00000 * 2 1 3 28 28 H 1.09003 * 109.47062 * 119.99764 * 2 1 3 29 29 H 1.09006 * 110.90859 * 86.27332 * 5 3 2 30 30 H 1.09002 * 110.90910 * 322.67998 * 5 3 2 31 31 H 1.09005 * 109.46809 * 63.96971 * 9 8 6 32 32 H 1.08997 * 109.47677 * 183.97506 * 9 8 6 33 33 H 1.09000 * 109.46690 * 303.97639 * 9 8 6 34 34 H 1.09003 * 109.46759 * 310.00506 * 10 8 6 35 35 H 1.08993 * 109.47155 * 70.00317 * 10 8 6 36 36 H 1.09003 * 109.47337 * 299.99642 * 11 10 8 37 37 H 1.09000 * 109.47534 * 60.00221 * 11 10 8 38 38 H 1.09009 * 109.46931 * 300.00357 * 12 11 10 39 39 H 1.09006 * 109.47016 * 59.99344 * 12 11 10 40 40 H 1.08996 * 109.47195 * 300.00149 * 13 12 11 41 41 H 1.09000 * 109.47182 * 60.00243 * 13 12 11 42 42 H 0.97001 * 119.99378 * 179.97438 * 17 16 14 43 43 H 1.09008 * 109.87730 * 121.45351 * 22 6 5 44 44 H 1.08995 * 109.88285 * 242.45324 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5767 2.0121 -0.8056 5 6 3.5844 1.4754 -0.1264 6 6 3.9332 2.8408 0.5142 7 1 4.0702 3.5998 -0.2561 8 7 5.1395 2.7260 1.3447 9 6 5.4587 4.0067 1.9895 10 6 6.2774 2.2360 0.5554 11 6 7.4376 1.8929 1.4919 12 6 8.6231 1.3831 0.6699 13 6 9.7835 1.0406 1.6062 14 6 10.9513 0.5391 0.7964 15 1 10.8734 0.4711 -0.2786 16 6 12.1188 0.1661 1.4280 17 7 12.2134 0.2485 2.7372 18 14 13.5661 -0.4562 0.4243 19 1 13.2072 -0.4525 -1.0167 20 1 14.7380 0.4289 0.6443 21 1 13.9037 -1.8390 0.8473 22 6 2.7072 3.1730 1.3866 23 8 1.7903 2.0713 1.2778 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8898 1.4471 -1.1724 30 1 4.0380 0.6565 0.4320 31 1 4.6570 4.2771 2.6769 32 1 6.3940 3.9127 2.5412 33 1 5.5616 4.7807 1.2289 34 1 5.9798 1.3442 0.0038 35 1 6.5928 3.0086 -0.1458 36 1 7.7353 2.7847 2.0436 37 1 7.1223 1.1202 2.1931 38 1 8.3257 0.4914 0.1178 39 1 8.9383 2.1561 -0.0312 40 1 10.0806 1.9325 2.1579 41 1 9.4685 0.2678 2.3074 42 1 13.0346 -0.0142 3.1816 43 1 3.0143 3.2983 2.4251 44 1 2.2334 4.0865 1.0277 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688527024.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:27 Heat of formation + Delta-G solvation = -69.894557 kcal Electronic energy + Delta-G solvation = -19131.170922 eV Core-core repulsion = 16275.495622 eV Total energy + Delta-G solvation = -2855.675300 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.02077 -37.26300 -34.42197 -33.73463 -32.32131 -30.90396 -29.07910 -27.61446 -26.20548 -24.04561 -23.46712 -21.54827 -21.01647 -20.10130 -19.89680 -17.03841 -16.39530 -16.13287 -15.62020 -15.25916 -14.62388 -14.35453 -14.19965 -14.07868 -13.77685 -13.37724 -12.88534 -12.54366 -12.42286 -12.06678 -11.89760 -11.74083 -11.72703 -11.37983 -11.34429 -11.18824 -10.97473 -10.91552 -10.75754 -10.49529 -10.43955 -10.32471 -9.76163 -9.59858 -9.24660 -8.98292 -8.34063 -8.31507 -5.97097 -3.99221 3.32125 3.39396 3.43573 3.68403 3.80932 4.28026 4.48238 4.57772 4.83039 4.89578 4.97413 5.04826 5.12151 5.19995 5.29958 5.37365 5.38761 5.48448 5.50720 5.58442 5.61701 5.65426 5.68733 5.74444 5.86449 5.90441 5.96733 5.97790 6.10073 6.15573 6.25469 6.52637 6.75441 6.82336 6.97303 7.06014 7.09642 7.24491 7.72336 7.88050 8.04222 8.46992 9.08570 9.64626 11.14305 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.032282 B = 0.003247 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.159583 B = 8621.369985 C = 9147.790054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.077 3.923 4 H 0.066 0.934 5 C -0.146 4.146 6 C 0.049 3.951 7 H 0.051 0.949 8 N -0.532 5.532 9 C 0.017 3.983 10 C 0.054 3.946 11 C -0.114 4.114 12 C -0.109 4.109 13 C 0.021 3.979 14 C -0.519 4.519 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.055 3.945 23 O -0.369 6.369 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.023 0.977 34 H 0.074 0.926 35 H 0.030 0.970 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.044 0.956 40 H 0.014 0.986 41 H 0.016 0.984 42 H 0.259 0.741 43 H 0.093 0.907 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.731 5.032 -5.484 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C 0.019 3.981 4 H 0.084 0.916 5 C -0.183 4.183 6 C -0.060 4.060 7 H 0.069 0.931 8 N -0.256 5.256 9 C -0.131 4.131 10 C -0.073 4.073 11 C -0.152 4.152 12 C -0.147 4.147 13 C -0.016 4.016 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.022 4.022 23 O -0.288 6.288 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.042 0.958 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.871 4.601 -4.819 22.863 hybrid contribution 1.305 0.443 -1.272 1.875 sum -20.567 5.044 -6.091 22.035 Atomic orbital electron populations 1.21733 0.95400 1.01552 1.02060 1.21556 0.96503 0.94431 1.03064 1.23181 0.94013 0.94372 0.86491 0.91565 1.23295 0.95756 0.97974 1.01313 1.23021 0.91672 0.97066 0.94222 0.93102 1.62171 1.03624 1.27993 1.31845 1.22505 1.02570 0.89299 0.98744 1.22288 0.90432 0.99242 0.95359 1.21685 0.94004 1.01223 0.98253 1.21596 0.95237 0.99138 0.98716 1.19087 0.91487 0.96607 0.94409 1.21327 0.98124 1.42834 0.93471 0.92746 1.25041 0.98737 0.95915 0.94884 1.69984 1.27062 1.48637 1.07860 0.86558 0.82649 0.78510 0.80422 1.19774 1.21054 1.21009 1.23197 0.88191 0.89309 1.01498 1.88930 1.57970 1.45297 1.36652 0.92112 0.93017 0.92724 0.90648 0.90738 0.90401 0.88827 0.91591 0.90206 0.95798 0.90783 0.95185 0.92512 0.91645 0.93499 0.93750 0.96757 0.96595 0.93107 0.88886 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.86 37.16 0.37 -0.83 16 2 C -0.12 -1.04 5.69 -26.73 -0.15 -1.19 16 3 C 0.08 0.76 3.29 -25.68 -0.08 0.68 16 4 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 5 C -0.15 -1.51 4.89 -24.73 -0.12 -1.64 16 6 C 0.05 0.54 2.76 -66.19 -0.18 0.36 16 7 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 8 N -0.53 -6.87 4.55 -233.05 -1.06 -7.93 16 9 C 0.02 0.19 9.13 60.06 0.55 0.74 16 10 C 0.05 0.77 4.76 -3.82 -0.02 0.75 16 11 C -0.11 -1.97 5.15 -26.73 -0.14 -2.10 16 12 C -0.11 -2.26 5.15 -26.74 -0.14 -2.39 16 13 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 14 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 18 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.06 0.59 6.98 37.73 0.26 0.85 16 23 O -0.37 -4.46 11.10 -35.23 -0.39 -4.85 16 24 H 0.06 0.55 8.06 -51.92 -0.42 0.13 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 1.11 7.48 -51.93 -0.39 0.72 16 31 H 0.07 0.66 6.63 -51.93 -0.34 0.32 16 32 H 0.08 1.00 6.15 -51.93 -0.32 0.68 16 33 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 1.03 6.46 -51.93 -0.34 0.69 16 35 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 36 H 0.06 0.98 6.40 -51.93 -0.33 0.65 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 39 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.09 1.02 6.54 -51.92 -0.34 0.68 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -30.84 342.88 -9.13 -39.98 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -8.36 Total: -4.46 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -0.21 Total: -18.15 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: -0.32 Total: -34.58 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.39 Total: -4.85 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.84 -9.13 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688527024.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.918 kcal (2) G-P(sol) polarization free energy of solvation -30.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds