Wall clock time and date at job start Mon Mar 30 2020 07:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47011 * 2 1 4 4 H 1.08998 * 110.55284 * 307.87743 * 3 2 1 5 5 C 1.54997 * 110.61939 * 184.99892 * 3 2 1 6 6 C 1.54802 * 102.09528 * 204.47810 * 5 3 2 7 7 H 1.09006 * 110.48896 * 262.20378 * 6 5 3 8 8 N 1.46897 * 110.49155 * 139.56024 * 6 5 3 9 9 C 1.46900 * 111.00611 * 181.64492 * 8 6 5 10 10 C 1.46903 * 111.00198 * 57.68697 * 8 6 5 11 11 C 1.52999 * 109.47047 * 190.00510 * 10 8 6 12 12 C 1.53003 * 109.47250 * 180.02562 * 11 10 8 13 13 C 1.52989 * 109.47499 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47179 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00153 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00023 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99586 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00039 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47028 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.46692 * 119.99905 * 18 16 14 21 21 H 1.48499 * 109.46831 * 239.99810 * 18 16 14 22 22 C 1.54097 * 104.18874 * 20.87653 * 6 5 3 23 23 O 1.43744 * 107.42294 * 1.96068 * 22 6 5 24 24 H 1.09008 * 109.46915 * 299.99819 * 1 2 3 25 25 H 1.08997 * 109.47298 * 59.99881 * 1 2 3 26 26 H 1.08996 * 109.47279 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46971 * 240.00000 * 2 1 3 28 28 H 1.09003 * 109.47062 * 119.99764 * 2 1 3 29 29 H 1.09006 * 110.90859 * 86.27332 * 5 3 2 30 30 H 1.09002 * 110.90910 * 322.67998 * 5 3 2 31 31 H 1.09005 * 109.46809 * 63.96971 * 9 8 6 32 32 H 1.08997 * 109.47677 * 183.97506 * 9 8 6 33 33 H 1.09000 * 109.46690 * 303.97639 * 9 8 6 34 34 H 1.09003 * 109.46759 * 310.00506 * 10 8 6 35 35 H 1.08993 * 109.47155 * 70.00317 * 10 8 6 36 36 H 1.09003 * 109.47337 * 299.99642 * 11 10 8 37 37 H 1.09000 * 109.47534 * 60.00221 * 11 10 8 38 38 H 1.09009 * 109.46931 * 300.00357 * 12 11 10 39 39 H 1.09006 * 109.47016 * 59.99344 * 12 11 10 40 40 H 1.08996 * 109.47195 * 300.00149 * 13 12 11 41 41 H 1.09000 * 109.47182 * 60.00243 * 13 12 11 42 42 H 0.97001 * 119.99378 * 179.97438 * 17 16 14 43 43 H 1.09008 * 109.87730 * 121.45351 * 22 6 5 44 44 H 1.08995 * 109.88285 * 242.45324 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5767 2.0121 -0.8056 5 6 3.5844 1.4754 -0.1264 6 6 3.9332 2.8408 0.5142 7 1 4.0702 3.5998 -0.2561 8 7 5.1395 2.7260 1.3447 9 6 5.4587 4.0067 1.9895 10 6 6.2774 2.2360 0.5554 11 6 7.4376 1.8929 1.4919 12 6 8.6231 1.3831 0.6699 13 6 9.7835 1.0406 1.6062 14 6 10.9513 0.5391 0.7964 15 1 10.8734 0.4711 -0.2786 16 6 12.1188 0.1661 1.4280 17 7 12.2134 0.2485 2.7372 18 14 13.5661 -0.4562 0.4243 19 1 13.2072 -0.4525 -1.0167 20 1 14.7380 0.4289 0.6443 21 1 13.9037 -1.8390 0.8473 22 6 2.7072 3.1730 1.3866 23 8 1.7903 2.0713 1.2778 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8898 1.4471 -1.1724 30 1 4.0380 0.6565 0.4320 31 1 4.6570 4.2771 2.6769 32 1 6.3940 3.9127 2.5412 33 1 5.5616 4.7807 1.2289 34 1 5.9798 1.3442 0.0038 35 1 6.5928 3.0086 -0.1458 36 1 7.7353 2.7847 2.0436 37 1 7.1223 1.1202 2.1931 38 1 8.3257 0.4914 0.1178 39 1 8.9383 2.1561 -0.0312 40 1 10.0806 1.9325 2.1579 41 1 9.4685 0.2678 2.3074 42 1 13.0346 -0.0142 3.1816 43 1 3.0143 3.2983 2.4251 44 1 2.2334 4.0865 1.0277 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688527024.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:26 Heat of formation + Delta-G solvation = -88.554583 kcal Electronic energy + Delta-G solvation = -19131.980081 eV Core-core repulsion = 16275.495622 eV Total energy + Delta-G solvation = -2856.484460 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87485 -38.32925 -36.15897 -34.54652 -34.16226 -31.91706 -30.52139 -28.61912 -27.51904 -25.67508 -24.22520 -22.97757 -21.93537 -21.56623 -20.96550 -18.43928 -17.87237 -17.22883 -16.55561 -16.51271 -16.32763 -15.67213 -15.26067 -15.08871 -14.51597 -14.41754 -14.18595 -13.98066 -13.63377 -13.53857 -13.23636 -12.94631 -12.81099 -12.60925 -12.46871 -12.37062 -12.25551 -12.14110 -12.00074 -11.86190 -11.70930 -11.48229 -11.32862 -11.26043 -10.99266 -10.56317 -10.54997 -9.31194 -8.20245 -6.31756 1.39458 1.39939 1.53455 2.40596 2.80964 2.93819 3.12582 3.46590 3.81571 4.02089 4.07953 4.11083 4.16472 4.25447 4.30399 4.41357 4.46352 4.52109 4.55822 4.60438 4.71596 4.73958 4.76953 4.86806 4.87325 4.91093 4.94401 5.07301 5.12129 5.13287 5.22447 5.26442 5.28027 5.36622 5.44161 5.55205 5.77198 5.86648 5.95519 6.06658 6.16364 6.25842 6.86177 7.37704 8.91936 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.032282 B = 0.003247 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.159583 B = 8621.369985 C = 9147.790054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.077 3.923 4 H 0.082 0.918 5 C -0.145 4.145 6 C 0.049 3.951 7 H 0.063 0.937 8 N -0.545 5.545 9 C 0.016 3.984 10 C 0.066 3.934 11 C -0.104 4.104 12 C -0.095 4.095 13 C 0.023 3.977 14 C -0.543 4.543 15 H 0.060 0.940 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.261 1.261 20 H -0.278 1.278 21 H -0.278 1.278 22 C 0.056 3.944 23 O -0.392 6.392 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.050 0.950 40 H -0.011 1.011 41 H -0.012 1.012 42 H 0.263 0.737 43 H 0.086 0.914 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.352 5.282 -7.474 24.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C 0.020 3.980 4 H 0.100 0.900 5 C -0.182 4.182 6 C -0.059 4.059 7 H 0.081 0.919 8 N -0.270 5.270 9 C -0.131 4.131 10 C -0.062 4.062 11 C -0.142 4.142 12 C -0.134 4.134 13 C -0.014 4.014 14 C -0.581 4.581 15 H 0.079 0.921 16 C -0.201 4.201 17 N -0.576 5.576 18 Si 0.791 3.209 19 H -0.184 1.184 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.021 4.021 23 O -0.311 6.311 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.007 0.993 41 H 0.006 0.994 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.511 4.858 -6.815 24.016 hybrid contribution 1.469 0.372 -0.598 1.629 sum -21.041 5.229 -7.413 22.914 Atomic orbital electron populations 1.21709 0.94761 1.02103 1.01896 1.21587 0.97073 0.93940 1.03030 1.23318 0.93687 0.94939 0.86100 0.89997 1.23291 0.96144 0.96949 1.01865 1.23081 0.90752 0.97769 0.94313 0.91869 1.62103 1.03733 1.28910 1.32268 1.22521 1.02440 0.89052 0.99115 1.22053 0.89785 0.99815 0.94528 1.21506 0.94046 1.00477 0.98132 1.21391 0.94443 0.99632 0.97897 1.19014 0.93289 0.94457 0.94624 1.21773 0.99204 1.43096 0.94040 0.92130 1.26038 1.02065 0.95951 0.96072 1.70120 1.28159 1.49489 1.09793 0.85374 0.78467 0.77933 0.79127 1.18439 1.20331 1.20334 1.23240 0.88027 0.89713 1.01164 1.88912 1.58375 1.45916 1.37925 0.93475 0.91919 0.91873 0.89138 0.92320 0.88847 0.90655 0.90128 0.91658 0.94789 0.90219 0.94549 0.92810 0.92969 0.92994 0.93112 0.99308 0.99377 0.92786 0.89630 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.86 71.98 0.71 -1.44 16 2 C -0.12 -1.94 5.69 30.59 0.17 -1.77 16 3 C 0.08 1.38 3.29 31.28 0.10 1.48 16 4 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 5 C -0.14 -2.76 4.89 31.89 0.16 -2.60 16 6 C 0.05 1.00 2.76 45.90 0.13 1.12 16 7 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 8 N -0.55 -13.42 4.55 -891.24 -4.05 -17.47 16 9 C 0.02 0.36 9.13 127.69 1.17 1.53 16 10 C 0.07 1.79 4.76 86.30 0.41 2.20 16 11 C -0.10 -3.59 5.15 30.60 0.16 -3.43 16 12 C -0.10 -3.97 5.15 30.59 0.16 -3.81 16 13 C 0.02 1.26 4.97 29.85 0.15 1.41 16 14 C -0.54 -31.62 9.11 25.60 0.23 -31.39 16 15 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 16 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 17 N -0.94 -58.15 13.29 21.45 0.28 -57.87 16 18 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 19 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 22 C 0.06 1.09 6.98 72.35 0.51 1.60 16 23 O -0.39 -8.98 11.10 -148.98 -1.65 -10.63 16 24 H 0.05 0.81 8.06 -2.38 -0.02 0.79 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.07 1.73 7.48 -2.39 -0.02 1.71 16 31 H 0.08 1.52 6.63 -2.38 -0.02 1.50 16 32 H 0.06 1.62 6.15 -2.39 -0.01 1.60 16 33 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 2.08 6.46 -2.39 -0.02 2.07 16 35 H 0.04 0.95 8.12 -2.39 -0.02 0.93 16 36 H 0.05 1.88 6.40 -2.39 -0.02 1.87 16 37 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 40 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 41 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 42 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.09 1.78 6.54 -2.38 -0.02 1.77 16 44 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -66.33 342.88 2.04 -64.30 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.92 Total: 9.70 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 4.51 Total: -34.86 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -3.77 Total: -75.34 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -1.65 Total: -10.63 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -66.33 2.04 -64.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688527024.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.259 kcal (2) G-P(sol) polarization free energy of solvation -66.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds