Wall clock time and date at job start Mon Mar 30 2020 07:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47018 * 2 1 4 4 H 1.09003 * 109.87313 * 54.55538 * 3 2 1 5 5 C 1.54158 * 109.97663 * 175.64876 * 3 2 1 6 6 C 1.54811 * 104.15994 * 121.55870 * 5 3 2 7 7 H 1.09001 * 110.90625 * 262.63229 * 6 5 3 8 8 N 1.46890 * 110.91160 * 139.05547 * 6 5 3 9 9 C 1.46904 * 111.00388 * 186.29500 * 8 6 5 10 10 C 1.46907 * 110.99916 * 62.34716 * 8 6 5 11 11 C 1.53004 * 109.47042 * 190.00257 * 10 8 6 12 12 C 1.53000 * 109.46948 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47061 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47163 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99911 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00144 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99895 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00125 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47311 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47076 * 299.99756 * 18 16 14 21 21 H 1.48500 * 109.47138 * 59.99673 * 18 16 14 22 22 C 1.55004 * 102.12136 * 20.84004 * 6 5 3 23 23 O 1.43742 * 109.87941 * 293.54788 * 3 2 1 24 24 H 1.09004 * 109.46867 * 300.00052 * 1 2 3 25 25 H 1.08998 * 109.47003 * 59.99560 * 1 2 3 26 26 H 1.08998 * 109.47019 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47207 * 240.00272 * 2 1 3 28 28 H 1.08998 * 109.47253 * 119.99949 * 2 1 3 29 29 H 1.09004 * 110.52396 * 2.88510 * 5 3 2 30 30 H 1.09000 * 110.48965 * 240.21248 * 5 3 2 31 31 H 1.08998 * 109.47125 * 290.81308 * 9 8 6 32 32 H 1.09003 * 109.46903 * 50.80950 * 9 8 6 33 33 H 1.09000 * 109.47770 * 170.80821 * 9 8 6 34 34 H 1.08990 * 109.47311 * 69.99502 * 10 8 6 35 35 H 1.08996 * 109.46388 * 309.99537 * 10 8 6 36 36 H 1.09002 * 109.47303 * 59.99426 * 11 10 8 37 37 H 1.08998 * 109.46735 * 299.99441 * 11 10 8 38 38 H 1.08990 * 109.47255 * 59.99336 * 12 11 10 39 39 H 1.09002 * 109.46951 * 299.99865 * 12 11 10 40 40 H 1.09002 * 109.47237 * 59.99523 * 13 12 11 41 41 H 1.09002 * 109.47138 * 299.99763 * 13 12 11 42 42 H 0.96994 * 120.00184 * 0.02562 * 17 16 14 43 43 H 1.08994 * 110.61441 * 81.50107 * 22 6 5 44 44 H 1.08997 * 110.61673 * 204.33706 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6030 1.9900 0.8351 5 6 3.5776 1.4576 0.1099 6 6 4.0406 2.2142 -1.1588 7 1 4.3260 1.5160 -1.9457 8 7 5.1456 3.1309 -0.8486 9 6 5.4874 3.9572 -2.0142 10 6 6.3202 2.3942 -0.3630 11 6 7.3529 3.3830 0.1819 12 6 8.5760 2.6157 0.6882 13 6 9.6089 3.6044 1.2324 14 6 10.8133 2.8487 1.7317 15 1 10.8392 1.7709 1.6676 16 6 11.8822 3.5331 2.2703 17 7 11.8508 4.8456 2.3478 18 14 13.3748 2.5962 2.8898 19 1 14.3775 3.5559 3.4180 20 1 12.9618 1.6670 3.9720 21 1 13.9714 1.8210 1.7725 22 6 2.7641 3.0001 -1.5531 23 8 1.6938 2.0834 -1.2392 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9705 0.4408 0.1124 30 1 3.8907 1.9907 1.0076 31 1 5.9420 3.3315 -2.7822 32 1 4.5828 4.4188 -2.4101 33 1 6.1908 4.7342 -1.7151 34 1 6.7582 1.8269 -1.1841 35 1 6.0178 1.7107 0.4303 36 1 6.9148 3.9504 1.0030 37 1 7.6553 4.0666 -0.6115 38 1 9.0141 2.0481 -0.1326 39 1 8.2733 1.9323 1.4816 40 1 9.1709 4.1725 2.0532 41 1 9.9115 4.2875 0.4387 42 1 11.0757 5.3321 2.0265 43 1 2.6757 3.9107 -0.9607 44 1 2.7715 3.2352 -2.6174 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688527028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:29 Heat of formation + Delta-G solvation = -76.358882 kcal Electronic energy + Delta-G solvation = -19113.232465 eV Core-core repulsion = 16257.276850 eV Total energy + Delta-G solvation = -2855.955614 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.09383 -37.37802 -34.65307 -33.79803 -32.47124 -30.92568 -28.94148 -27.60230 -26.07943 -23.82866 -23.41444 -21.68025 -21.24676 -20.24600 -20.18835 -16.81884 -16.65999 -16.37323 -15.85588 -15.07756 -14.88139 -14.18781 -14.05401 -13.71242 -13.61977 -13.52429 -13.26896 -12.90707 -12.68107 -12.39446 -12.03197 -11.81192 -11.78866 -11.41001 -11.20299 -11.14913 -10.91158 -10.84112 -10.77824 -10.55976 -10.48235 -10.10478 -9.86876 -9.74893 -9.60188 -8.49442 -8.42725 -8.29408 -6.33020 -4.01554 3.44783 3.47076 3.49727 3.65836 3.91140 4.30618 4.43241 4.57212 4.71989 4.87622 4.90430 5.00703 5.05834 5.19579 5.26877 5.32863 5.43092 5.44500 5.45983 5.51525 5.55119 5.62773 5.69316 5.74067 5.79218 5.82015 5.86863 5.93335 6.02865 6.04648 6.13963 6.40319 6.64784 6.67930 6.82470 6.93291 7.01157 7.10696 7.46181 7.59759 8.26651 8.50100 8.92474 9.70919 11.07751 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.036757 B = 0.003137 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.569556 B = 8922.516895 C = 9454.386608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.079 3.921 4 H 0.069 0.931 5 C -0.146 4.146 6 C 0.049 3.951 7 H 0.054 0.946 8 N -0.532 5.532 9 C 0.020 3.980 10 C 0.055 3.945 11 C -0.114 4.114 12 C -0.102 4.102 13 C 0.009 3.991 14 C -0.602 4.602 15 H 0.047 0.953 16 C 0.013 3.987 17 N -0.915 5.915 18 Si 1.068 2.932 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.288 1.288 22 C 0.056 3.944 23 O -0.373 6.373 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.026 0.974 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.006 0.994 41 H 0.005 0.995 42 H 0.268 0.732 43 H 0.071 0.929 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.866 -6.777 -7.513 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C 0.021 3.979 4 H 0.087 0.913 5 C -0.184 4.184 6 C -0.060 4.060 7 H 0.072 0.928 8 N -0.257 5.257 9 C -0.129 4.129 10 C -0.072 4.072 11 C -0.152 4.152 12 C -0.140 4.140 13 C -0.028 4.028 14 C -0.640 4.640 15 H 0.065 0.935 16 C -0.191 4.191 17 N -0.551 5.551 18 Si 0.897 3.103 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.215 1.215 22 C -0.021 4.021 23 O -0.292 6.292 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.737 -6.321 -6.564 21.739 hybrid contribution -0.973 -0.710 -1.285 1.761 sum -20.710 -7.032 -7.849 23.237 Atomic orbital electron populations 1.21718 0.95338 1.01405 1.02234 1.21733 0.96766 0.94954 1.02600 1.22774 0.93822 0.93884 0.87417 0.91283 1.23075 0.94946 1.01219 0.99196 1.23176 0.92352 0.93862 0.96631 0.92764 1.62128 1.07538 1.23228 1.32804 1.22464 1.01282 0.97797 0.91310 1.22279 0.89801 0.96187 0.98911 1.21677 0.95099 0.97893 1.00538 1.21462 0.94481 0.98818 0.99254 1.19208 0.93768 0.94665 0.95194 1.22090 1.03120 0.94484 1.44330 0.93459 1.25862 1.01500 0.96618 0.95099 1.70775 1.32659 1.06946 1.44730 0.83555 0.75539 0.74894 0.76329 1.20763 1.21466 1.21497 1.23543 0.84647 0.92988 1.00917 1.88863 1.43164 1.57002 1.40183 0.92855 0.92085 0.92880 0.91328 0.90766 0.90484 0.89212 0.95539 0.91695 0.90478 0.95028 0.90819 0.91738 0.92573 0.93551 0.93315 0.97532 0.97674 0.92111 0.91044 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.82 37.16 0.37 -0.81 16 2 C -0.12 -1.03 5.44 -26.73 -0.15 -1.18 16 3 C 0.08 0.77 3.41 -26.12 -0.09 0.68 16 4 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.15 -1.50 5.09 -25.17 -0.13 -1.63 16 6 C 0.05 0.54 2.80 -65.71 -0.18 0.35 16 7 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 8 N -0.53 -6.65 4.60 -232.47 -1.07 -7.72 16 9 C 0.02 0.22 9.12 60.07 0.55 0.77 16 10 C 0.06 0.78 4.82 -3.82 -0.02 0.76 16 11 C -0.11 -1.95 5.14 -26.73 -0.14 -2.09 16 12 C -0.10 -2.13 5.15 -26.73 -0.14 -2.27 16 13 C 0.01 0.23 4.28 -27.89 -0.12 0.11 16 14 C -0.60 -17.61 9.11 -34.44 -0.31 -17.93 16 15 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 16 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 17 N -0.91 -28.66 13.65 55.43 0.76 -27.90 16 18 Si 1.07 25.72 29.90 -169.99 -5.08 20.64 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.06 0.58 6.09 38.22 0.23 0.81 16 23 O -0.37 -4.23 10.81 -35.23 -0.38 -4.62 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.54 7.89 -51.93 -0.41 0.13 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.74 7.71 -51.93 -0.40 0.34 16 30 H 0.09 0.99 7.81 -51.93 -0.41 0.58 16 31 H 0.03 0.29 8.07 -51.93 -0.42 -0.13 16 32 H 0.06 0.61 6.69 -51.93 -0.35 0.27 16 33 H 0.08 0.93 6.73 -51.93 -0.35 0.58 16 34 H 0.03 0.45 8.07 -51.93 -0.42 0.03 16 35 H 0.07 1.01 6.79 -51.93 -0.35 0.66 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.06 0.96 6.67 -51.93 -0.35 0.61 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 41 H 0.00 0.14 8.01 -51.93 -0.42 -0.28 16 42 H 0.27 8.38 7.22 -40.82 -0.29 8.08 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.80 7.80 -51.93 -0.41 0.39 16 LS Contribution 342.64 15.07 5.16 5.16 Total: -1.00 -31.33 342.64 -9.25 -40.58 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -8.41 Total: -4.01 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -0.22 Total: -22.14 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.31 Total: -35.62 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.38 Total: -4.62 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.33 -9.25 -40.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688527028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.780 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds