Wall clock time and date at job start Mon Mar 30 2020 07:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47018 * 2 1 4 4 H 1.09003 * 109.87313 * 54.55538 * 3 2 1 5 5 C 1.54158 * 109.97663 * 175.64876 * 3 2 1 6 6 C 1.54811 * 104.15994 * 121.55870 * 5 3 2 7 7 H 1.09001 * 110.90625 * 262.63229 * 6 5 3 8 8 N 1.46890 * 110.91160 * 139.05547 * 6 5 3 9 9 C 1.46904 * 111.00388 * 186.29500 * 8 6 5 10 10 C 1.46907 * 110.99916 * 62.34716 * 8 6 5 11 11 C 1.53004 * 109.47042 * 190.00257 * 10 8 6 12 12 C 1.53000 * 109.46948 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47061 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47163 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99911 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00144 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99895 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00125 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47311 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47076 * 299.99756 * 18 16 14 21 21 H 1.48500 * 109.47138 * 59.99673 * 18 16 14 22 22 C 1.55004 * 102.12136 * 20.84004 * 6 5 3 23 23 O 1.43742 * 109.87941 * 293.54788 * 3 2 1 24 24 H 1.09004 * 109.46867 * 300.00052 * 1 2 3 25 25 H 1.08998 * 109.47003 * 59.99560 * 1 2 3 26 26 H 1.08998 * 109.47019 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47207 * 240.00272 * 2 1 3 28 28 H 1.08998 * 109.47253 * 119.99949 * 2 1 3 29 29 H 1.09004 * 110.52396 * 2.88510 * 5 3 2 30 30 H 1.09000 * 110.48965 * 240.21248 * 5 3 2 31 31 H 1.08998 * 109.47125 * 290.81308 * 9 8 6 32 32 H 1.09003 * 109.46903 * 50.80950 * 9 8 6 33 33 H 1.09000 * 109.47770 * 170.80821 * 9 8 6 34 34 H 1.08990 * 109.47311 * 69.99502 * 10 8 6 35 35 H 1.08996 * 109.46388 * 309.99537 * 10 8 6 36 36 H 1.09002 * 109.47303 * 59.99426 * 11 10 8 37 37 H 1.08998 * 109.46735 * 299.99441 * 11 10 8 38 38 H 1.08990 * 109.47255 * 59.99336 * 12 11 10 39 39 H 1.09002 * 109.46951 * 299.99865 * 12 11 10 40 40 H 1.09002 * 109.47237 * 59.99523 * 13 12 11 41 41 H 1.09002 * 109.47138 * 299.99763 * 13 12 11 42 42 H 0.96994 * 120.00184 * 0.02562 * 17 16 14 43 43 H 1.08994 * 110.61441 * 81.50107 * 22 6 5 44 44 H 1.08997 * 110.61673 * 204.33706 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6030 1.9900 0.8351 5 6 3.5776 1.4576 0.1099 6 6 4.0406 2.2142 -1.1588 7 1 4.3260 1.5160 -1.9457 8 7 5.1456 3.1309 -0.8486 9 6 5.4874 3.9572 -2.0142 10 6 6.3202 2.3942 -0.3630 11 6 7.3529 3.3830 0.1819 12 6 8.5760 2.6157 0.6882 13 6 9.6089 3.6044 1.2324 14 6 10.8133 2.8487 1.7317 15 1 10.8392 1.7709 1.6676 16 6 11.8822 3.5331 2.2703 17 7 11.8508 4.8456 2.3478 18 14 13.3748 2.5962 2.8898 19 1 14.3775 3.5559 3.4180 20 1 12.9618 1.6670 3.9720 21 1 13.9714 1.8210 1.7725 22 6 2.7641 3.0001 -1.5531 23 8 1.6938 2.0834 -1.2392 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9705 0.4408 0.1124 30 1 3.8907 1.9907 1.0076 31 1 5.9420 3.3315 -2.7822 32 1 4.5828 4.4188 -2.4101 33 1 6.1908 4.7342 -1.7151 34 1 6.7582 1.8269 -1.1841 35 1 6.0178 1.7107 0.4303 36 1 6.9148 3.9504 1.0030 37 1 7.6553 4.0666 -0.6115 38 1 9.0141 2.0481 -0.1326 39 1 8.2733 1.9323 1.4816 40 1 9.1709 4.1725 2.0532 41 1 9.9115 4.2875 0.4387 42 1 11.0757 5.3321 2.0265 43 1 2.6757 3.9107 -0.9607 44 1 2.7715 3.2352 -2.6174 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688527028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:29 Heat of formation + Delta-G solvation = -95.243436 kcal Electronic energy + Delta-G solvation = -19114.051360 eV Core-core repulsion = 16257.276850 eV Total energy + Delta-G solvation = -2856.774510 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.93758 -38.44810 -36.46631 -34.58433 -34.24452 -31.91970 -30.34947 -28.56701 -27.39670 -25.56856 -24.16805 -23.26756 -22.02402 -21.79174 -21.16589 -18.86968 -17.73816 -17.21592 -16.63839 -16.40052 -15.95915 -15.63464 -15.30261 -15.13110 -14.85201 -14.38135 -14.30275 -14.22875 -13.91923 -13.79049 -13.24327 -12.94091 -12.72498 -12.59970 -12.52646 -12.38270 -12.17608 -11.98330 -11.94495 -11.88340 -11.73333 -11.53480 -11.46487 -11.38237 -10.68400 -10.60972 -10.55353 -9.41877 -8.70394 -6.40852 1.51518 1.60467 1.79909 2.55834 2.62590 3.02238 3.14564 3.49403 3.68242 3.93136 3.95742 4.04676 4.12878 4.17731 4.23877 4.36204 4.43615 4.45778 4.48114 4.57540 4.62052 4.70524 4.72843 4.76622 4.83134 4.85335 4.94886 5.01209 5.04065 5.07429 5.08141 5.09660 5.20054 5.24652 5.41762 5.46905 5.55208 5.83605 5.96626 6.00244 6.11092 6.17948 6.56876 7.41975 8.70460 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.036757 B = 0.003137 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.569556 B = 8922.516895 C = 9454.386608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.077 3.923 4 H 0.070 0.930 5 C -0.144 4.144 6 C 0.050 3.950 7 H 0.055 0.945 8 N -0.539 5.539 9 C 0.018 3.982 10 C 0.066 3.934 11 C -0.103 4.103 12 C -0.090 4.090 13 C 0.008 3.992 14 C -0.622 4.622 15 H 0.051 0.949 16 C -0.043 4.043 17 N -0.939 5.939 18 Si 1.119 2.881 19 H -0.283 1.283 20 H -0.267 1.267 21 H -0.268 1.268 22 C 0.059 3.941 23 O -0.387 6.387 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.029 0.971 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.051 0.949 40 H -0.014 1.014 41 H -0.014 1.014 42 H 0.255 0.745 43 H 0.068 0.932 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.410 -8.341 -7.776 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C 0.020 3.980 4 H 0.088 0.912 5 C -0.182 4.182 6 C -0.059 4.059 7 H 0.073 0.927 8 N -0.264 5.264 9 C -0.130 4.130 10 C -0.062 4.062 11 C -0.140 4.140 12 C -0.128 4.128 13 C -0.029 4.029 14 C -0.659 4.659 15 H 0.069 0.931 16 C -0.239 4.239 17 N -0.577 5.577 18 Si 0.939 3.061 19 H -0.208 1.208 20 H -0.193 1.193 21 H -0.193 1.193 22 C -0.018 4.018 23 O -0.306 6.306 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.005 0.995 41 H 0.004 0.996 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.316 -7.891 -6.844 22.844 hybrid contribution -0.851 -0.185 -1.217 1.497 sum -21.168 -8.077 -8.061 24.047 Atomic orbital electron populations 1.21702 0.94999 1.02038 1.01801 1.21744 0.97058 0.94025 1.03061 1.22857 0.93514 0.94688 0.86967 0.91223 1.23066 0.95305 1.01423 0.98441 1.23193 0.91943 0.93760 0.97014 0.92675 1.62066 1.07173 1.23497 1.33657 1.22505 1.02075 0.97450 0.90961 1.22059 0.89683 0.95274 0.99143 1.21485 0.94368 0.98028 1.00168 1.21285 0.94570 0.97761 0.99224 1.19182 0.94590 0.95176 0.93980 1.22558 1.04223 0.94998 1.44155 0.93063 1.27528 1.04944 0.96675 0.94788 1.70915 1.32360 1.08068 1.46315 0.82929 0.72000 0.74128 0.77020 1.20832 1.19257 1.19295 1.23563 0.83973 0.92571 1.01723 1.88857 1.43627 1.57294 1.40797 0.92526 0.93261 0.91742 0.91613 0.89515 0.89713 0.90053 0.95237 0.89733 0.91584 0.94779 0.90241 0.92550 0.92777 0.93304 0.92995 0.99538 0.99600 0.93606 0.91346 0.87969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.82 71.98 0.71 -1.40 16 2 C -0.12 -1.83 5.44 30.60 0.17 -1.66 16 3 C 0.08 1.40 3.41 30.99 0.11 1.51 16 4 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 5 C -0.14 -2.73 5.09 31.60 0.16 -2.56 16 6 C 0.05 1.01 2.80 46.22 0.13 1.13 16 7 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 8 N -0.54 -12.69 4.60 -889.40 -4.10 -16.78 16 9 C 0.02 0.38 9.12 127.69 1.16 1.54 16 10 C 0.07 1.77 4.82 86.30 0.42 2.19 16 11 C -0.10 -3.46 5.14 30.60 0.16 -3.30 16 12 C -0.09 -3.75 5.15 30.59 0.16 -3.59 16 13 C 0.01 0.42 4.28 29.84 0.13 0.55 16 14 C -0.62 -36.52 9.11 25.60 0.23 -36.29 16 15 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 16 C -0.04 -2.52 5.46 84.66 0.46 -2.06 16 17 N -0.94 -59.79 13.65 21.45 0.29 -59.50 16 18 Si 1.12 50.92 29.90 68.60 2.05 52.97 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 C 0.06 1.10 6.09 72.67 0.44 1.55 16 23 O -0.39 -8.20 10.81 -148.98 -1.61 -9.81 16 24 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.05 0.81 7.89 -2.39 -0.02 0.79 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.46 7.71 -2.38 -0.02 1.44 16 30 H 0.08 1.68 7.81 -2.39 -0.02 1.67 16 31 H 0.03 0.61 8.07 -2.39 -0.02 0.59 16 32 H 0.08 1.44 6.69 -2.39 -0.02 1.42 16 33 H 0.07 1.54 6.73 -2.39 -0.02 1.52 16 34 H 0.03 0.91 8.07 -2.39 -0.02 0.89 16 35 H 0.08 2.05 6.79 -2.39 -0.02 2.03 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 1.84 6.67 -2.39 -0.02 1.82 16 38 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 40 H -0.01 -0.78 8.01 -2.39 -0.02 -0.80 16 41 H -0.01 -0.81 8.01 -2.39 -0.02 -0.83 16 42 H 0.25 16.43 7.22 -92.71 -0.67 15.76 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.10 1.62 7.80 -2.39 -0.02 1.60 16 Total: -1.00 -66.79 342.64 2.09 -64.71 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.02 Total: 10.82 kcal Atomic # 6 Polarization: -46.83 SS G_CDS: 4.43 Total: -42.40 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -3.80 Total: -76.28 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -1.61 Total: -9.81 kcal Atomic # 14 Polarization: 50.92 SS G_CDS: 2.05 Total: 52.97 kcal Total: -66.79 2.09 -64.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688527028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.538 kcal (2) G-P(sol) polarization free energy of solvation -66.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds