Wall clock time and date at job start Mon Mar 30 2020 06:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47442 * 2 1 4 4 C 1.53002 * 109.47330 * 240.00119 * 2 1 3 5 5 N 1.46905 * 109.47631 * 120.00030 * 2 1 3 6 6 C 1.46906 * 110.99471 * 328.20823 * 5 2 1 7 7 C 1.52995 * 109.47116 * 294.16490 * 6 5 2 8 8 C 1.53004 * 109.47043 * 186.37729 * 7 6 5 9 9 O 1.42895 * 109.47340 * 179.97438 * 8 7 6 10 10 C 1.46902 * 110.99860 * 92.16140 * 5 2 1 11 11 C 1.52999 * 109.46989 * 173.34377 * 10 5 2 12 12 C 1.50701 * 115.54780 * 303.07916 * 11 10 5 13 13 H 1.07996 * 120.00310 * 0.37964 * 12 11 10 14 14 C 1.37883 * 119.99745 * 180.10118 * 12 11 10 15 15 N 1.31518 * 119.99851 * 0.28186 * 14 12 11 16 16 Si 1.86800 * 119.99857 * 180.27146 * 14 12 11 17 17 H 1.48502 * 109.47044 * 60.00436 * 16 14 12 18 18 H 1.48504 * 109.46820 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47332 * 300.00341 * 16 14 12 20 20 C 1.53002 * 117.49693 * 88.74574 * 11 10 5 21 21 C 1.52999 * 117.49898 * 157.40644 * 11 10 5 22 22 H 1.08996 * 109.46819 * 299.99828 * 1 2 3 23 23 H 1.08998 * 109.47139 * 59.99699 * 1 2 3 24 24 H 1.08999 * 109.46906 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47748 * 187.85266 * 3 2 1 26 26 H 1.09001 * 109.46646 * 307.85329 * 3 2 1 27 27 H 1.08998 * 109.47063 * 67.84563 * 3 2 1 28 28 H 1.08997 * 109.46879 * 306.08820 * 4 2 1 29 29 H 1.08999 * 109.46932 * 66.07829 * 4 2 1 30 30 H 1.08995 * 109.47397 * 186.08859 * 4 2 1 31 31 H 1.09007 * 109.47038 * 54.16728 * 6 5 2 32 32 H 1.08996 * 109.46598 * 174.16123 * 6 5 2 33 33 H 1.09000 * 109.47076 * 306.37865 * 7 6 5 34 34 H 1.09001 * 109.47380 * 66.38011 * 7 6 5 35 35 H 1.08999 * 109.47125 * 300.00519 * 8 7 6 36 36 H 1.09001 * 109.46802 * 59.99928 * 8 7 6 37 37 H 0.96697 * 114.00180 * 179.97438 * 9 8 7 38 38 H 1.08996 * 109.47318 * 53.34145 * 10 5 2 39 39 H 1.09000 * 109.47092 * 293.34302 * 10 5 2 40 40 H 0.96995 * 119.99834 * 180.02562 * 15 14 12 41 41 H 1.09000 * 117.49734 * 214.99907 * 20 11 10 42 42 H 1.08992 * 117.50281 * 0.02562 * 20 11 10 43 43 H 1.08999 * 117.49874 * 359.97438 * 21 11 10 44 44 H 1.08996 * 117.49788 * 144.97325 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0198 -0.6925 1.1994 6 6 1.0962 -0.5092 2.3271 7 6 1.0759 0.9652 2.7352 8 6 0.2400 1.1312 4.0059 9 8 0.2215 2.5081 4.3874 10 6 2.2441 -2.1189 0.9291 11 6 2.9072 -2.7702 2.1444 12 6 4.2091 -2.1513 2.5839 13 1 4.6094 -1.3009 2.0521 14 6 4.8862 -2.6674 3.6685 15 7 4.3987 -3.7031 4.3160 16 14 6.4961 -1.8956 4.2179 17 1 6.2649 -0.4746 4.5823 18 1 7.0203 -2.6305 5.3971 19 1 7.4832 -1.9683 3.1110 20 6 1.9904 -3.3341 3.2317 21 6 2.7544 -4.2840 2.3058 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1209 1.4458 -0.1404 26 1 1.5666 1.9952 -0.8115 27 1 1.7958 1.9142 0.9518 28 1 1.5905 -1.7126 -1.3054 29 1 1.7683 -0.1484 -2.1359 30 1 3.1245 -0.8166 -1.1964 31 1 0.0939 -0.8178 2.0297 32 1 1.4277 -1.1151 3.1703 33 1 2.0946 1.3041 2.9235 34 1 0.6383 1.5585 1.9323 35 1 -0.7787 0.7922 3.8175 36 1 0.6777 0.5379 4.8087 37 1 -0.2918 2.6878 5.1870 38 1 2.8930 -2.2263 0.0600 39 1 1.2891 -2.6058 0.7318 40 1 4.8748 -4.0659 5.0792 41 1 2.3289 -3.2576 4.2650 42 1 0.9149 -3.2415 3.0811 43 1 2.1811 -4.8158 1.5465 44 1 3.5957 -4.8323 2.7296 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691060723.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:59 Heat of formation + Delta-G solvation = -24.651900 kcal Electronic energy + Delta-G solvation = -20949.297756 eV Core-core repulsion = 18095.584325 eV Total energy + Delta-G solvation = -2853.713431 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.72771 -38.15111 -37.67955 -33.99830 -33.63085 -32.11890 -28.86846 -28.15204 -27.73300 -26.18378 -24.73942 -22.93129 -21.95203 -20.79075 -19.46141 -18.22611 -17.81796 -17.31774 -16.85221 -16.07535 -16.03388 -15.51726 -15.25842 -14.56250 -14.38126 -14.28550 -14.00319 -13.48973 -13.17785 -12.95909 -12.92959 -12.68248 -12.59940 -12.47893 -12.39454 -12.28562 -12.12452 -12.03184 -11.91946 -11.86339 -11.54837 -11.27261 -11.05728 -10.80648 -10.68138 -10.12400 -9.92993 -8.82182 -7.92897 -6.00138 1.43645 1.44456 1.51740 2.48046 2.92009 3.17109 3.55987 3.95919 4.02376 4.10720 4.15917 4.31817 4.38438 4.44593 4.52290 4.53710 4.63364 4.70281 4.74597 4.80057 4.86420 4.89558 4.89815 4.92886 5.01990 5.08043 5.08862 5.19408 5.24867 5.28794 5.32961 5.43979 5.50396 5.54903 5.64776 5.72451 6.02049 6.24200 6.44295 6.62083 6.65329 6.92205 7.02474 7.55604 9.00910 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015825 B = 0.008155 C = 0.006933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.969800 B = 3432.740467 C = 4037.547745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 C -0.142 4.142 4 C -0.144 4.144 5 N -0.522 5.522 6 C 0.061 3.939 7 C -0.113 4.113 8 C 0.079 3.921 9 O -0.591 6.591 10 C 0.111 3.889 11 C 0.021 3.979 12 C -0.460 4.460 13 H 0.055 0.945 14 C 0.009 3.991 15 N -0.905 5.905 16 Si 0.948 3.052 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.275 1.275 20 C -0.181 4.181 21 C -0.196 4.196 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.038 0.962 37 H 0.396 0.604 38 H 0.072 0.928 39 H 0.014 0.986 40 H 0.253 0.747 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.903 8.502 -5.864 14.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 C -0.200 4.200 4 C -0.201 4.201 5 N -0.246 5.246 6 C -0.067 4.067 7 C -0.151 4.151 8 C 0.001 3.999 9 O -0.399 6.399 10 C -0.016 4.016 11 C 0.020 3.980 12 C -0.498 4.498 13 H 0.073 0.927 14 C -0.189 4.189 15 N -0.545 5.545 16 Si 0.775 3.225 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.201 1.201 20 C -0.219 4.219 21 C -0.235 4.235 22 H 0.085 0.915 23 H 0.093 0.907 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.245 0.755 38 H 0.090 0.910 39 H 0.032 0.968 40 H 0.063 0.937 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.012 8.657 -6.121 13.914 hybrid contribution -0.001 -0.631 1.058 1.232 sum -9.013 8.025 -5.063 13.087 Atomic orbital electron populations 1.22485 0.95933 1.01464 1.03065 1.21240 0.93314 0.95209 0.89852 1.22112 1.00787 0.94492 1.02563 1.22066 1.01016 1.00119 0.96926 1.61998 1.46305 1.11411 1.04862 1.22006 0.94103 0.95887 0.94691 1.21744 0.99983 0.96394 0.96937 1.22108 0.99307 0.82111 0.96400 1.86409 1.77224 1.26166 1.50106 1.21513 0.96256 0.86970 0.96870 1.19109 0.94677 0.90740 0.93448 1.20725 1.04292 1.12942 1.11791 0.92712 1.25642 1.00455 0.95752 0.97033 1.70158 1.39322 1.24278 1.20715 0.85775 0.80909 0.78384 0.77440 1.20391 1.21504 1.20062 1.22609 0.93223 1.07755 0.98299 1.22755 1.02728 0.95775 1.02198 0.91509 0.90707 0.93662 0.93673 0.91052 0.91670 0.92932 0.90550 0.93060 0.94134 0.91715 0.92999 0.89611 0.92086 0.94395 0.75473 0.91022 0.96800 0.93729 0.90423 0.92525 0.92224 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 7.12 71.98 0.51 -3.65 16 2 C 0.09 2.67 0.77 3.53 0.00 2.67 16 3 C -0.14 -3.82 8.44 71.98 0.61 -3.21 16 4 C -0.14 -3.85 7.09 71.98 0.51 -3.34 16 5 N -0.52 -19.03 4.16 -846.68 -3.52 -22.55 16 6 C 0.06 2.13 4.09 86.30 0.35 2.48 16 7 C -0.11 -3.54 3.82 30.59 0.12 -3.42 16 8 C 0.08 2.13 7.05 71.98 0.51 2.64 16 9 O -0.59 -15.15 13.66 -148.98 -2.03 -17.18 16 10 C 0.11 4.48 3.73 86.30 0.32 4.80 16 11 C 0.02 1.02 1.64 -52.93 -0.09 0.93 16 12 C -0.46 -25.09 8.93 25.60 0.23 -24.87 16 13 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 14 C 0.01 0.49 5.27 84.66 0.45 0.94 16 15 N -0.90 -51.38 8.59 21.45 0.18 -51.20 16 16 Si 0.95 44.74 29.54 68.60 2.03 46.76 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 C -0.18 -8.84 7.35 30.62 0.23 -8.62 16 21 C -0.20 -9.76 9.38 30.62 0.29 -9.47 16 22 H 0.07 1.62 4.75 -2.39 -0.01 1.60 16 23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.04 1.15 7.92 -2.39 -0.02 1.13 16 25 H 0.04 1.32 8.13 -2.39 -0.02 1.30 16 26 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 27 H 0.06 1.84 4.34 -2.39 -0.01 1.83 16 28 H 0.05 1.41 6.95 -2.39 -0.02 1.40 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.53 7.43 -2.39 -0.02 1.51 16 31 H 0.04 1.28 5.89 -2.38 -0.01 1.27 16 32 H 0.06 2.70 5.27 -2.39 -0.01 2.69 16 33 H 0.05 1.91 7.97 -2.39 -0.02 1.89 16 34 H 0.09 2.42 4.31 -2.39 -0.01 2.41 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.40 6.05 9.12 -74.06 -0.68 5.37 16 38 H 0.07 2.86 5.76 -2.39 -0.01 2.85 16 39 H 0.01 0.54 8.03 -2.39 -0.02 0.52 16 40 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 41 H 0.08 4.30 6.30 -2.39 -0.02 4.28 16 42 H 0.06 2.49 7.97 -2.39 -0.02 2.47 16 43 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 44 H 0.08 4.56 6.26 -2.39 -0.01 4.54 16 Total: -1.00 -61.44 323.32 0.99 -60.45 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.30 Total: 25.83 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 4.03 Total: -42.11 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -3.34 Total: -73.75 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -2.03 Total: -17.18 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -61.44 0.99 -60.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691060723.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.796 kcal (2) G-P(sol) polarization free energy of solvation -61.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds