Wall clock time and date at job start Mon Mar 30 2020 06:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46894 * 2 1 4 4 C 1.52998 * 109.47166 * 119.99795 * 2 1 3 5 5 O 1.42899 * 109.47423 * 300.00147 * 4 2 1 6 6 C 1.52997 * 109.47115 * 240.00339 * 2 1 3 7 7 N 1.46898 * 109.47567 * 66.28273 * 6 2 1 8 8 C 1.46853 * 110.99881 * 330.22709 * 7 6 2 9 9 C 1.53032 * 109.52143 * 185.83622 * 8 7 6 10 10 C 1.53119 * 109.27897 * 300.81930 * 9 8 7 11 11 C 1.53007 * 109.57491 * 177.59229 * 10 9 8 12 12 C 1.50700 * 109.47137 * 65.28927 * 11 10 9 13 13 H 1.08005 * 119.99619 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00146 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99834 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99921 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47364 * 60.00237 * 16 14 12 18 18 H 1.48503 * 109.46818 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47275 * 299.99667 * 16 14 12 20 20 C 1.53113 * 109.16177 * 57.65803 * 10 9 8 21 21 C 1.46850 * 110.99787 * 94.43269 * 7 6 2 22 22 H 1.09003 * 109.46863 * 257.21874 * 1 2 3 23 23 H 1.08997 * 109.47388 * 17.22137 * 1 2 3 24 24 H 1.09001 * 109.47173 * 137.22301 * 1 2 3 25 25 H 1.08994 * 109.46722 * 223.92404 * 3 2 1 26 26 H 1.09001 * 109.46606 * 343.92697 * 3 2 1 27 27 H 1.08997 * 109.46813 * 103.91813 * 3 2 1 28 28 H 1.08999 * 109.46983 * 179.97438 * 4 2 1 29 29 H 1.09007 * 109.46927 * 60.00312 * 4 2 1 30 30 H 0.96702 * 114.00087 * 179.97438 * 5 4 2 31 31 H 1.08998 * 109.47238 * 186.28827 * 6 2 1 32 32 H 1.09008 * 109.46784 * 306.28361 * 6 2 1 33 33 H 1.08990 * 109.46240 * 305.85261 * 8 7 6 34 34 H 1.09004 * 109.46296 * 65.82181 * 8 7 6 35 35 H 1.09004 * 109.50259 * 180.87877 * 9 8 7 36 36 H 1.08995 * 109.50721 * 60.75922 * 9 8 7 37 37 H 1.09000 * 109.52209 * 297.74903 * 10 9 8 38 38 H 1.09002 * 109.47087 * 185.28507 * 11 10 9 39 39 H 1.08996 * 109.46682 * 305.28686 * 11 10 9 40 40 H 0.97001 * 120.00282 * 180.02562 * 15 14 12 41 41 H 1.09008 * 109.50742 * 182.40594 * 20 10 9 42 42 H 1.09002 * 109.50600 * 62.28449 * 20 10 9 43 43 H 1.08998 * 109.46147 * 294.17988 * 21 7 6 44 44 H 1.09004 * 109.45800 * 54.15923 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.5637 -0.0476 2.4160 6 6 2.0400 -0.7212 -1.2493 7 7 1.6781 0.0533 -2.4439 8 6 0.4364 0.8065 -2.2265 9 6 0.0132 1.4828 -3.5324 10 6 1.1277 2.4235 -3.9988 11 6 0.7372 3.0580 -5.3352 12 6 -0.4658 3.9441 -5.1381 13 1 -0.9078 4.0442 -4.1578 14 6 -1.0027 4.6260 -6.2094 15 7 -0.4647 4.5035 -7.4032 16 14 -2.4942 5.7237 -5.9651 17 1 -2.1676 6.7923 -4.9870 18 1 -2.8739 6.3387 -7.2624 19 1 -3.6273 4.9124 -5.4521 20 6 2.4216 1.6231 -4.1712 21 6 2.7750 0.9427 -2.8467 22 1 -0.3633 -0.2274 1.0022 23 1 -0.3634 0.9815 -0.3042 24 1 -0.3633 -0.7543 -0.6979 25 1 2.8589 1.5384 -0.7129 26 1 1.2300 2.1142 -0.2845 27 1 2.3941 1.7027 0.9975 28 1 3.1300 -0.7216 1.2490 29 1 1.6767 -1.7489 1.2492 30 1 1.8488 -0.4513 3.2472 31 1 3.1242 -0.8197 -1.1948 32 1 1.5877 -1.7113 -1.3073 33 1 -0.3490 0.1254 -1.8992 34 1 0.6010 1.5652 -1.4613 35 1 -0.9000 2.0545 -3.3668 36 1 -0.1650 0.7239 -4.2942 37 1 1.2795 3.2055 -3.2548 38 1 1.5691 3.6533 -5.7117 39 1 0.4972 2.2739 -6.0533 40 1 -0.8421 4.9836 -8.1569 41 1 3.2292 2.2949 -4.4620 42 1 2.2813 0.8663 -4.9430 43 1 2.9287 1.7006 -2.0787 44 1 3.6881 0.3602 -2.9701 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691478592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:06 Heat of formation + Delta-G solvation = -25.933232 kcal Electronic energy + Delta-G solvation = -20490.791552 eV Core-core repulsion = 17637.022558 eV Total energy + Delta-G solvation = -2853.768994 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.44154 -37.40439 -35.48153 -33.15044 -31.76883 -30.59274 -28.52628 -27.38785 -26.77380 -25.01015 -23.07035 -22.18009 -20.49270 -19.22531 -18.82864 -17.46141 -16.20428 -15.62394 -15.40347 -15.15049 -14.69996 -14.41512 -14.16663 -13.65606 -13.26178 -13.03642 -12.65741 -12.44198 -12.21081 -11.88967 -11.74159 -11.62645 -11.23509 -11.04545 -10.91542 -10.82661 -10.69759 -10.62142 -10.46113 -10.16058 -10.11543 -10.04971 -9.80981 -9.36375 -8.87892 -8.81278 -8.27184 -7.78986 -5.92541 -3.93744 3.37062 3.41449 3.43854 3.92756 4.29042 4.51534 4.66278 4.78665 4.92803 5.20871 5.23076 5.32869 5.37721 5.42826 5.50333 5.59042 5.65549 5.69058 5.80249 5.85240 5.90987 6.04779 6.10804 6.13300 6.15348 6.22339 6.31174 6.41920 6.50040 6.54442 6.68983 6.77069 7.07615 7.19905 7.28892 7.38515 7.48201 7.51403 7.76105 7.93910 8.08783 8.52175 9.12739 9.69385 11.18867 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.032253 B = 0.004805 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.940989 B = 5826.112030 C = 6324.434631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.164 4.164 4 C 0.089 3.911 5 O -0.568 6.568 6 C 0.064 3.936 7 N -0.526 5.526 8 C 0.013 3.987 9 C -0.104 4.104 10 C -0.080 4.080 11 C 0.028 3.972 12 C -0.513 4.513 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.888 3.112 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.112 4.112 21 C 0.042 3.958 22 H 0.051 0.949 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.375 0.625 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.244 -11.342 16.468 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.092 4.092 3 C -0.220 4.220 4 C 0.011 3.989 5 O -0.373 6.373 6 C -0.065 4.065 7 N -0.249 5.249 8 C -0.113 4.113 9 C -0.141 4.141 10 C -0.099 4.099 11 C -0.009 4.009 12 C -0.551 4.551 13 H 0.072 0.928 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.716 3.284 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.150 4.150 21 C -0.085 4.085 22 H 0.070 0.930 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.221 0.779 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.867 -11.221 15.415 19.949 hybrid contribution -0.365 0.784 1.060 1.368 sum 5.503 -10.437 16.476 20.265 Atomic orbital electron populations 1.22678 0.93659 1.02946 1.01292 1.21236 0.97232 0.96717 0.94041 1.22593 1.02113 0.94958 1.02307 1.22169 0.96752 0.94518 0.85472 1.86512 1.77500 1.57356 1.15915 1.22345 0.99740 0.97251 0.87174 1.62223 1.04138 1.27188 1.31377 1.23656 0.91825 0.96955 0.98843 1.21611 0.99023 0.97995 0.95501 1.21211 0.92664 0.95628 1.00385 1.19114 0.95988 0.95135 0.90660 1.21224 1.13045 1.26469 0.94391 0.92801 1.25010 0.97160 0.96949 0.95343 1.69957 1.41061 1.43026 0.99636 0.86724 0.83492 0.80981 0.77188 1.20368 1.21388 1.20301 1.21687 0.98627 0.98814 0.95836 1.22544 0.93106 0.94981 0.97849 0.92983 0.91069 0.91824 0.91208 0.91251 0.92288 0.93953 0.93770 0.77906 0.91811 0.91017 0.89733 0.92350 0.91217 0.92295 0.93229 0.96904 0.96598 0.93091 0.92398 0.91811 0.93701 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 7.25 37.16 0.27 -1.49 16 2 C -0.09 -1.01 0.60 -154.51 -0.09 -1.10 16 3 C -0.16 -2.02 7.72 37.16 0.29 -1.74 16 4 C 0.09 0.82 5.69 37.16 0.21 1.03 16 5 O -0.57 -5.44 11.93 -35.23 -0.42 -5.86 16 6 C 0.06 0.74 4.81 -3.83 -0.02 0.72 16 7 N -0.53 -7.61 4.86 -234.67 -1.14 -8.75 16 8 C 0.01 0.21 3.31 -3.83 -0.01 0.19 16 9 C -0.10 -1.99 5.15 -26.65 -0.14 -2.13 16 10 C -0.08 -1.67 2.20 -90.50 -0.20 -1.87 16 11 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 12 C -0.51 -14.53 8.45 -34.44 -0.29 -14.82 16 13 H 0.05 1.48 7.08 -52.48 -0.37 1.11 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 16 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 C -0.11 -1.99 5.38 -26.65 -0.14 -2.13 16 21 C 0.04 0.62 4.87 -3.83 -0.02 0.61 16 22 H 0.05 0.61 7.08 -51.93 -0.37 0.24 16 23 H 0.07 0.92 5.17 -51.93 -0.27 0.65 16 24 H 0.06 0.74 5.93 -51.93 -0.31 0.43 16 25 H 0.07 0.87 4.22 -51.93 -0.22 0.66 16 26 H 0.07 0.95 5.34 -51.93 -0.28 0.68 16 27 H 0.06 0.72 7.08 -51.93 -0.37 0.35 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.36 8.14 -51.92 -0.42 -0.07 16 30 H 0.37 1.86 9.12 45.56 0.42 2.27 16 31 H 0.06 0.67 7.57 -51.93 -0.39 0.28 16 32 H 0.07 0.79 8.01 -51.92 -0.42 0.37 16 33 H 0.08 1.22 4.72 -51.93 -0.24 0.97 16 34 H 0.06 0.90 2.94 -51.93 -0.15 0.74 16 35 H 0.07 1.43 7.06 -51.93 -0.37 1.06 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 0.65 4.78 -51.93 -0.25 0.40 16 44 H 0.06 0.81 7.91 -51.93 -0.41 0.40 16 LS Contribution 313.72 15.07 4.73 4.73 Total: -1.00 -31.18 313.72 -8.00 -39.17 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.51 Total: 1.01 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -0.37 Total: -20.60 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.40 Total: -35.37 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.42 Total: -5.86 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.18 -8.00 -39.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691478592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.241 kcal (2) G-P(sol) polarization free energy of solvation -31.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds