Wall clock time and date at job start Mon Mar 30 2020 06:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46894 * 2 1 4 4 C 1.52998 * 109.47166 * 119.99795 * 2 1 3 5 5 O 1.42899 * 109.47423 * 300.00147 * 4 2 1 6 6 C 1.52997 * 109.47115 * 240.00339 * 2 1 3 7 7 N 1.46898 * 109.47567 * 66.28273 * 6 2 1 8 8 C 1.46853 * 110.99881 * 330.22709 * 7 6 2 9 9 C 1.53032 * 109.52143 * 185.83622 * 8 7 6 10 10 C 1.53119 * 109.27897 * 300.81930 * 9 8 7 11 11 C 1.53007 * 109.57491 * 177.59229 * 10 9 8 12 12 C 1.50700 * 109.47137 * 65.28927 * 11 10 9 13 13 H 1.08005 * 119.99619 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00146 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99834 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99921 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47364 * 60.00237 * 16 14 12 18 18 H 1.48503 * 109.46818 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47275 * 299.99667 * 16 14 12 20 20 C 1.53113 * 109.16177 * 57.65803 * 10 9 8 21 21 C 1.46850 * 110.99787 * 94.43269 * 7 6 2 22 22 H 1.09003 * 109.46863 * 257.21874 * 1 2 3 23 23 H 1.08997 * 109.47388 * 17.22137 * 1 2 3 24 24 H 1.09001 * 109.47173 * 137.22301 * 1 2 3 25 25 H 1.08994 * 109.46722 * 223.92404 * 3 2 1 26 26 H 1.09001 * 109.46606 * 343.92697 * 3 2 1 27 27 H 1.08997 * 109.46813 * 103.91813 * 3 2 1 28 28 H 1.08999 * 109.46983 * 179.97438 * 4 2 1 29 29 H 1.09007 * 109.46927 * 60.00312 * 4 2 1 30 30 H 0.96702 * 114.00087 * 179.97438 * 5 4 2 31 31 H 1.08998 * 109.47238 * 186.28827 * 6 2 1 32 32 H 1.09008 * 109.46784 * 306.28361 * 6 2 1 33 33 H 1.08990 * 109.46240 * 305.85261 * 8 7 6 34 34 H 1.09004 * 109.46296 * 65.82181 * 8 7 6 35 35 H 1.09004 * 109.50259 * 180.87877 * 9 8 7 36 36 H 1.08995 * 109.50721 * 60.75922 * 9 8 7 37 37 H 1.09000 * 109.52209 * 297.74903 * 10 9 8 38 38 H 1.09002 * 109.47087 * 185.28507 * 11 10 9 39 39 H 1.08996 * 109.46682 * 305.28686 * 11 10 9 40 40 H 0.97001 * 120.00282 * 180.02562 * 15 14 12 41 41 H 1.09008 * 109.50742 * 182.40594 * 20 10 9 42 42 H 1.09002 * 109.50600 * 62.28449 * 20 10 9 43 43 H 1.08998 * 109.46147 * 294.17988 * 21 7 6 44 44 H 1.09004 * 109.45800 * 54.15923 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.5637 -0.0476 2.4160 6 6 2.0400 -0.7212 -1.2493 7 7 1.6781 0.0533 -2.4439 8 6 0.4364 0.8065 -2.2265 9 6 0.0132 1.4828 -3.5324 10 6 1.1277 2.4235 -3.9988 11 6 0.7372 3.0580 -5.3352 12 6 -0.4658 3.9441 -5.1381 13 1 -0.9078 4.0442 -4.1578 14 6 -1.0027 4.6260 -6.2094 15 7 -0.4647 4.5035 -7.4032 16 14 -2.4942 5.7237 -5.9651 17 1 -2.1676 6.7923 -4.9870 18 1 -2.8739 6.3387 -7.2624 19 1 -3.6273 4.9124 -5.4521 20 6 2.4216 1.6231 -4.1712 21 6 2.7750 0.9427 -2.8467 22 1 -0.3633 -0.2274 1.0022 23 1 -0.3634 0.9815 -0.3042 24 1 -0.3633 -0.7543 -0.6979 25 1 2.8589 1.5384 -0.7129 26 1 1.2300 2.1142 -0.2845 27 1 2.3941 1.7027 0.9975 28 1 3.1300 -0.7216 1.2490 29 1 1.6767 -1.7489 1.2492 30 1 1.8488 -0.4513 3.2472 31 1 3.1242 -0.8197 -1.1948 32 1 1.5877 -1.7113 -1.3073 33 1 -0.3490 0.1254 -1.8992 34 1 0.6010 1.5652 -1.4613 35 1 -0.9000 2.0545 -3.3668 36 1 -0.1650 0.7239 -4.2942 37 1 1.2795 3.2055 -3.2548 38 1 1.5691 3.6533 -5.7117 39 1 0.4972 2.2739 -6.0533 40 1 -0.8421 4.9836 -8.1569 41 1 3.2292 2.2949 -4.4620 42 1 2.2813 0.8663 -4.9430 43 1 2.9287 1.7006 -2.0787 44 1 3.6881 0.3602 -2.9701 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691478592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:05 Heat of formation + Delta-G solvation = -48.202203 kcal Electronic energy + Delta-G solvation = -20491.757207 eV Core-core repulsion = 17637.022558 eV Total energy + Delta-G solvation = -2854.734649 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.52539 -38.44584 -36.70534 -34.90523 -33.35865 -31.88305 -30.08385 -28.41175 -28.01966 -26.35010 -24.63969 -23.57423 -22.04509 -20.40131 -20.06299 -18.43548 -18.14880 -16.74544 -16.51264 -16.36451 -16.09938 -15.82445 -15.35435 -14.92643 -14.49446 -14.32674 -14.08202 -13.83863 -13.64176 -13.33620 -13.22989 -12.86846 -12.69660 -12.61736 -12.41170 -12.25508 -12.03060 -11.84733 -11.77647 -11.67987 -11.45239 -11.31377 -11.14084 -10.79046 -10.70501 -10.58319 -10.41082 -8.91511 -8.16856 -6.26595 1.38835 1.41883 1.49544 2.41847 3.05988 3.16053 3.38581 3.82275 3.87827 4.03949 4.08721 4.16503 4.19172 4.40363 4.46119 4.54060 4.60515 4.64019 4.69996 4.75837 4.82162 4.83192 4.87630 4.92519 5.03680 5.10898 5.14042 5.19717 5.21870 5.25180 5.37096 5.44854 5.47533 5.47880 5.51644 5.61913 5.83260 5.90763 6.26834 6.30930 6.36707 6.89246 6.98229 7.41630 8.95025 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.032253 B = 0.004805 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.940989 B = 5826.112030 C = 6324.434631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.160 4.160 4 C 0.092 3.908 5 O -0.589 6.589 6 C 0.066 3.934 7 N -0.538 5.538 8 C 0.026 3.974 9 C -0.099 4.099 10 C -0.073 4.073 11 C 0.034 3.966 12 C -0.530 4.530 13 H 0.059 0.941 14 C -0.002 4.002 15 N -0.936 5.936 16 Si 0.960 3.040 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.267 1.267 20 C -0.108 4.108 21 C 0.050 3.950 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.394 0.606 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.041 0.959 37 H 0.045 0.955 38 H -0.016 1.016 39 H -0.015 1.015 40 H 0.262 0.738 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.433 -12.292 18.698 23.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.091 4.091 3 C -0.216 4.216 4 C 0.014 3.986 5 O -0.397 6.397 6 C -0.062 4.062 7 N -0.261 5.261 8 C -0.100 4.100 9 C -0.137 4.137 10 C -0.092 4.092 11 C -0.003 4.003 12 C -0.568 4.568 13 H 0.077 0.923 14 C -0.199 4.199 15 N -0.577 5.577 16 Si 0.785 3.215 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.192 1.192 20 C -0.146 4.146 21 C -0.077 4.077 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.244 0.756 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.002 0.998 39 H 0.004 0.996 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.067 -12.189 17.680 22.315 hybrid contribution -0.401 1.071 0.356 1.197 sum 5.666 -11.119 18.036 21.932 Atomic orbital electron populations 1.22623 0.94377 1.02052 1.01330 1.21203 0.96569 0.96099 0.95266 1.22537 1.01343 0.95533 1.02192 1.22111 0.97445 0.94632 0.84398 1.86454 1.77947 1.58187 1.17084 1.22403 1.01022 0.96973 0.85782 1.62158 1.03531 1.26903 1.33533 1.23551 0.93020 0.97285 0.96134 1.21513 0.97703 0.97177 0.97297 1.21058 0.95019 0.96072 0.97003 1.19013 0.94570 0.93882 0.92873 1.21612 1.13702 1.26736 0.94705 0.92312 1.25953 1.00457 0.98533 0.94941 1.70101 1.42820 1.44175 1.00588 0.85577 0.79509 0.79024 0.77411 1.19263 1.20905 1.19213 1.21605 0.96856 0.98317 0.97810 1.22481 0.94028 0.95461 0.95770 0.92860 0.92591 0.91598 0.91273 0.93097 0.92208 0.92618 0.92323 0.75615 0.90026 0.89852 0.88365 0.91859 0.93107 0.93977 0.93654 0.99754 0.99625 0.92941 0.92312 0.93044 0.93018 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 7.25 71.98 0.52 -2.66 16 2 C -0.09 -1.75 0.60 -52.18 -0.03 -1.78 16 3 C -0.16 -3.63 7.72 71.98 0.56 -3.07 16 4 C 0.09 1.37 5.69 71.98 0.41 1.78 16 5 O -0.59 -9.57 11.93 -148.98 -1.78 -11.34 16 6 C 0.07 1.30 4.81 86.30 0.42 1.72 16 7 N -0.54 -14.45 4.86 -896.35 -4.35 -18.80 16 8 C 0.03 0.79 3.31 86.32 0.29 1.07 16 9 C -0.10 -3.88 5.15 30.64 0.16 -3.73 16 10 C -0.07 -3.12 2.20 -10.71 -0.02 -3.14 16 11 C 0.03 1.85 4.45 29.85 0.13 1.98 16 12 C -0.53 -30.84 8.45 25.60 0.22 -30.63 16 13 H 0.06 3.29 7.08 -2.91 -0.02 3.27 16 14 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 15 N -0.94 -58.67 13.29 21.45 0.28 -58.39 16 16 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 C -0.11 -3.86 5.38 30.65 0.16 -3.69 16 21 C 0.05 1.37 4.87 86.33 0.42 1.79 16 22 H 0.05 1.14 7.08 -2.39 -0.02 1.12 16 23 H 0.06 1.37 5.17 -2.39 -0.01 1.36 16 24 H 0.07 1.38 5.93 -2.39 -0.01 1.37 16 25 H 0.07 1.56 4.22 -2.39 -0.01 1.55 16 26 H 0.05 1.34 5.34 -2.39 -0.01 1.33 16 27 H 0.06 1.34 7.08 -2.39 -0.02 1.32 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.39 2.73 9.12 -74.06 -0.68 2.05 16 31 H 0.08 1.37 7.57 -2.39 -0.02 1.35 16 32 H 0.08 1.51 8.01 -2.38 -0.02 1.49 16 33 H 0.10 2.69 4.72 -2.39 -0.01 2.68 16 34 H 0.06 1.88 2.94 -2.38 -0.01 1.87 16 35 H 0.05 2.14 7.06 -2.39 -0.02 2.12 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 38 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 39 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 40 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 41 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.05 1.39 4.78 -2.39 -0.01 1.37 16 44 H 0.09 2.00 7.91 -2.39 -0.02 1.98 16 Total: -1.00 -68.50 313.72 0.18 -68.32 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.31 Total: 12.76 kcal Atomic # 6 Polarization: -43.69 SS G_CDS: 3.69 Total: -40.00 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -4.07 Total: -77.19 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -1.78 Total: -11.34 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -68.50 0.18 -68.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691478592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.118 kcal (2) G-P(sol) polarization free energy of solvation -68.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds