Wall clock time and date at job start Mon Mar 30 2020 06:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47216 * 2 1 4 4 C 1.52998 * 109.47383 * 120.00694 * 2 1 3 5 5 H 1.08998 * 110.67785 * 57.02927 * 4 2 1 6 6 C 1.54991 * 110.61844 * 180.02562 * 4 2 1 7 7 C 1.54817 * 102.09285 * 155.52077 * 6 4 2 8 8 H 1.09004 * 110.48829 * 97.79579 * 7 6 4 9 9 N 1.46895 * 110.48761 * 220.30618 * 7 6 4 10 10 C 1.46900 * 111.00297 * 303.95718 * 9 7 6 11 11 C 1.46903 * 111.00163 * 179.97438 * 9 7 6 12 12 C 1.53002 * 109.47077 * 190.00324 * 11 9 7 13 13 C 1.53003 * 109.46851 * 180.02562 * 12 11 9 14 14 C 1.50694 * 109.46848 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00546 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00085 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00374 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99732 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47109 * 89.99702 * 18 16 14 20 20 H 1.48500 * 109.47260 * 209.99581 * 18 16 14 21 21 H 1.48506 * 109.47248 * 330.00016 * 18 16 14 22 22 C 1.54096 * 104.18822 * 339.11830 * 7 6 4 23 23 O 1.43749 * 107.29556 * 357.96748 * 22 7 6 24 24 H 1.09004 * 109.47037 * 299.99710 * 1 2 3 25 25 H 1.08997 * 109.47654 * 59.99665 * 1 2 3 26 26 H 1.09005 * 109.47216 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46581 * 240.00223 * 2 1 3 28 28 H 1.09004 * 109.47380 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47755 * 300.00375 * 3 2 1 30 30 H 1.09004 * 109.46881 * 60.00195 * 3 2 1 31 31 H 1.08996 * 110.90945 * 37.32016 * 6 4 2 32 32 H 1.09004 * 110.90588 * 273.71282 * 6 4 2 33 33 H 1.08996 * 109.47406 * 59.99616 * 10 9 7 34 34 H 1.09003 * 109.47579 * 179.97438 * 10 9 7 35 35 H 1.09003 * 109.47193 * 299.99897 * 10 9 7 36 36 H 1.08997 * 109.46589 * 310.00056 * 11 9 7 37 37 H 1.08999 * 109.46682 * 70.00108 * 11 9 7 38 38 H 1.09001 * 109.46948 * 299.99822 * 12 11 9 39 39 H 1.09002 * 109.47293 * 59.99857 * 12 11 9 40 40 H 1.09001 * 109.47004 * 299.99548 * 13 12 11 41 41 H 1.08999 * 109.46991 * 59.99733 * 13 12 11 42 42 H 0.96998 * 120.00461 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.88493 * 117.39400 * 22 7 6 44 44 H 1.09008 * 109.87811 * 238.39882 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6451 -1.7362 1.2957 6 6 3.5896 -0.7363 1.2763 7 6 3.8861 -0.8853 2.7884 8 1 4.0871 -1.9275 3.0369 9 7 5.0215 -0.0376 3.1758 10 6 6.2084 -0.3453 2.3667 11 6 5.3124 -0.1700 4.6096 12 6 6.3240 0.8999 5.0257 13 6 6.6274 0.7616 6.5189 14 6 7.6242 1.8149 6.9286 15 1 8.0037 2.5129 6.1970 16 6 8.0517 1.8876 8.2374 17 7 8.9220 2.8065 8.5949 18 14 7.3947 0.6808 9.5029 19 1 8.2697 -0.5183 9.5443 20 1 7.3765 1.3266 10.8400 21 1 6.0157 0.2746 9.1304 22 6 2.5927 -0.4068 3.4759 23 8 1.6894 0.0153 2.4404 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 3.9945 0.1994 0.8909 32 1 3.9803 -1.5869 0.7177 33 1 5.9857 -0.1715 1.3140 34 1 7.0340 0.2968 2.6738 35 1 6.4863 -1.3893 2.5117 36 1 4.3926 -0.0417 5.1802 37 1 5.7273 -1.1585 4.8063 38 1 7.2438 0.7717 4.4550 39 1 5.9090 1.8884 4.8288 40 1 5.7077 0.8895 7.0899 41 1 7.0424 -0.2270 6.7153 42 1 9.2231 2.8574 9.5155 43 1 2.1497 -1.2252 4.0432 44 1 2.8136 0.4281 4.1411 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691656654.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:05 Heat of formation + Delta-G solvation = -60.911693 kcal Electronic energy + Delta-G solvation = -19627.552184 eV Core-core repulsion = 16772.266410 eV Total energy + Delta-G solvation = -2855.285774 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.10597 -37.24094 -34.98143 -33.76248 -31.90330 -30.38410 -28.65818 -27.32486 -27.21982 -24.90992 -23.45580 -22.05852 -20.38736 -19.94160 -19.64286 -17.03321 -16.67617 -16.18206 -15.47465 -14.94406 -14.82101 -14.39650 -14.04865 -13.88506 -13.72376 -13.42014 -13.01042 -12.63249 -12.32043 -12.15501 -11.94718 -11.83029 -11.77496 -11.53845 -11.45595 -11.19801 -10.99657 -10.85968 -10.74977 -10.66013 -10.57086 -9.92512 -9.66049 -9.63093 -9.55429 -9.15256 -8.51916 -8.19049 -6.02198 -3.99881 3.31327 3.38865 3.42591 3.76597 3.94569 4.32861 4.46780 4.60467 4.78598 4.88540 4.91575 5.07055 5.21985 5.27715 5.31711 5.35187 5.47770 5.50145 5.56466 5.59351 5.63835 5.69722 5.73255 5.78560 5.84452 5.87600 5.91885 5.96214 6.05381 6.17047 6.20615 6.31611 6.53860 6.57663 6.86100 6.91318 7.21032 7.23997 7.37621 7.47351 7.82290 8.57118 9.03477 9.60448 11.11436 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.038189 B = 0.003734 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.017580 B = 7496.458394 C = 7647.354035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.146 4.146 4 C 0.081 3.919 5 H 0.065 0.935 6 C -0.148 4.148 7 C 0.049 3.951 8 H 0.049 0.951 9 N -0.530 5.530 10 C 0.022 3.978 11 C 0.049 3.951 12 C -0.097 4.097 13 C -0.013 4.013 14 C -0.518 4.518 15 H 0.072 0.928 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 C 0.054 3.946 23 O -0.365 6.365 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.021 0.979 36 H 0.070 0.930 37 H 0.029 0.971 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.015 0.985 41 H 0.008 0.992 42 H 0.262 0.738 43 H 0.055 0.945 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.471 -9.501 -17.449 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.203 4.203 4 C 0.023 3.977 5 H 0.083 0.917 6 C -0.185 4.185 7 C -0.060 4.060 8 H 0.067 0.933 9 N -0.255 5.255 10 C -0.126 4.126 11 C -0.078 4.078 12 C -0.135 4.135 13 C -0.051 4.051 14 C -0.556 4.556 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.023 4.023 23 O -0.284 6.284 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.040 0.960 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.034 0.966 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.677 -8.789 -17.360 24.373 hybrid contribution 0.279 -1.713 1.020 2.013 sum -14.398 -10.503 -16.340 24.179 Atomic orbital electron populations 1.21788 0.94782 1.01514 1.02151 1.21113 0.96362 0.97278 0.95826 1.21818 1.01184 0.95271 1.02032 1.23117 0.93276 0.94772 0.86546 0.91747 1.23369 0.96042 1.03691 0.95423 1.23004 0.92617 0.95165 0.95187 0.93307 1.62174 1.05119 1.53001 1.05183 1.22437 0.93302 0.99156 0.97743 1.22400 1.00210 0.98769 0.86428 1.21476 0.96508 0.97370 0.98112 1.19552 0.96802 0.96847 0.91904 1.21145 1.23795 1.15207 0.95455 0.91022 1.25043 0.94680 0.95407 0.98457 1.69916 1.32088 1.34255 1.18145 0.86772 0.80106 0.81479 0.80873 1.20411 1.21394 1.19026 1.23232 0.87798 1.00451 0.90863 1.88879 1.55384 1.64277 1.19817 0.91835 0.92817 0.93056 0.90459 0.92332 0.93137 0.91516 0.88584 0.90843 0.91788 0.90289 0.96043 0.91135 0.95310 0.92792 0.91894 0.96647 0.97365 0.92778 0.92677 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.11 37.16 0.34 -0.87 16 2 C -0.09 -0.77 2.88 -90.63 -0.26 -1.03 16 3 C -0.15 -1.40 8.75 37.15 0.32 -1.07 16 4 C 0.08 0.82 3.05 -25.68 -0.08 0.74 16 5 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 6 C -0.15 -1.51 4.94 -24.72 -0.12 -1.63 16 7 C 0.05 0.60 2.76 -66.19 -0.18 0.42 16 8 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 9 N -0.53 -7.57 4.54 -233.05 -1.06 -8.63 16 10 C 0.02 0.28 9.06 60.06 0.54 0.82 16 11 C 0.05 0.80 4.75 -3.82 -0.02 0.78 16 12 C -0.10 -1.94 5.08 -26.73 -0.14 -2.07 16 13 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 14 C -0.52 -14.99 9.66 -34.44 -0.33 -15.33 16 15 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 16 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -28.29 13.96 55.43 0.77 -27.51 16 18 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 22 C 0.05 0.67 6.83 37.73 0.26 0.93 16 23 O -0.36 -4.67 10.03 -35.23 -0.35 -5.02 16 24 H 0.06 0.61 7.90 -51.93 -0.41 0.20 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.57 6.16 -51.93 -0.32 0.25 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.76 7.59 -51.93 -0.39 0.36 16 31 H 0.10 1.06 5.14 -51.93 -0.27 0.79 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.71 6.64 -51.93 -0.34 0.36 16 34 H 0.08 1.11 6.30 -51.93 -0.33 0.78 16 35 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 1.12 6.43 -51.93 -0.33 0.79 16 37 H 0.03 0.47 8.12 -51.93 -0.42 0.04 16 38 H 0.05 1.08 6.47 -51.93 -0.34 0.74 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 41 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.10 1.36 6.74 -51.92 -0.35 1.01 16 LS Contribution 333.13 15.07 5.02 5.02 Total: -1.00 -30.80 333.13 -8.25 -39.05 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -8.09 Total: -3.29 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 0.12 Total: -16.92 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.29 Total: -36.14 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.35 Total: -5.02 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.80 -8.25 -39.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691656654.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.865 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds