Wall clock time and date at job start Mon Mar 30 2020 06:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47216 * 2 1 4 4 C 1.52998 * 109.47383 * 120.00694 * 2 1 3 5 5 H 1.08998 * 110.67785 * 57.02927 * 4 2 1 6 6 C 1.54991 * 110.61844 * 180.02562 * 4 2 1 7 7 C 1.54817 * 102.09285 * 155.52077 * 6 4 2 8 8 H 1.09004 * 110.48829 * 97.79579 * 7 6 4 9 9 N 1.46895 * 110.48761 * 220.30618 * 7 6 4 10 10 C 1.46900 * 111.00297 * 303.95718 * 9 7 6 11 11 C 1.46903 * 111.00163 * 179.97438 * 9 7 6 12 12 C 1.53002 * 109.47077 * 190.00324 * 11 9 7 13 13 C 1.53003 * 109.46851 * 180.02562 * 12 11 9 14 14 C 1.50694 * 109.46848 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00546 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00085 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00374 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99732 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47109 * 89.99702 * 18 16 14 20 20 H 1.48500 * 109.47260 * 209.99581 * 18 16 14 21 21 H 1.48506 * 109.47248 * 330.00016 * 18 16 14 22 22 C 1.54096 * 104.18822 * 339.11830 * 7 6 4 23 23 O 1.43749 * 107.29556 * 357.96748 * 22 7 6 24 24 H 1.09004 * 109.47037 * 299.99710 * 1 2 3 25 25 H 1.08997 * 109.47654 * 59.99665 * 1 2 3 26 26 H 1.09005 * 109.47216 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46581 * 240.00223 * 2 1 3 28 28 H 1.09004 * 109.47380 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47755 * 300.00375 * 3 2 1 30 30 H 1.09004 * 109.46881 * 60.00195 * 3 2 1 31 31 H 1.08996 * 110.90945 * 37.32016 * 6 4 2 32 32 H 1.09004 * 110.90588 * 273.71282 * 6 4 2 33 33 H 1.08996 * 109.47406 * 59.99616 * 10 9 7 34 34 H 1.09003 * 109.47579 * 179.97438 * 10 9 7 35 35 H 1.09003 * 109.47193 * 299.99897 * 10 9 7 36 36 H 1.08997 * 109.46589 * 310.00056 * 11 9 7 37 37 H 1.08999 * 109.46682 * 70.00108 * 11 9 7 38 38 H 1.09001 * 109.46948 * 299.99822 * 12 11 9 39 39 H 1.09002 * 109.47293 * 59.99857 * 12 11 9 40 40 H 1.09001 * 109.47004 * 299.99548 * 13 12 11 41 41 H 1.08999 * 109.46991 * 59.99733 * 13 12 11 42 42 H 0.96998 * 120.00461 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.88493 * 117.39400 * 22 7 6 44 44 H 1.09008 * 109.87811 * 238.39882 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6451 -1.7362 1.2957 6 6 3.5896 -0.7363 1.2763 7 6 3.8861 -0.8853 2.7884 8 1 4.0871 -1.9275 3.0369 9 7 5.0215 -0.0376 3.1758 10 6 6.2084 -0.3453 2.3667 11 6 5.3124 -0.1700 4.6096 12 6 6.3240 0.8999 5.0257 13 6 6.6274 0.7616 6.5189 14 6 7.6242 1.8149 6.9286 15 1 8.0037 2.5129 6.1970 16 6 8.0517 1.8876 8.2374 17 7 8.9220 2.8065 8.5949 18 14 7.3947 0.6808 9.5029 19 1 8.2697 -0.5183 9.5443 20 1 7.3765 1.3266 10.8400 21 1 6.0157 0.2746 9.1304 22 6 2.5927 -0.4068 3.4759 23 8 1.6894 0.0153 2.4404 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 3.9945 0.1994 0.8909 32 1 3.9803 -1.5869 0.7177 33 1 5.9857 -0.1715 1.3140 34 1 7.0340 0.2968 2.6738 35 1 6.4863 -1.3893 2.5117 36 1 4.3926 -0.0417 5.1802 37 1 5.7273 -1.1585 4.8063 38 1 7.2438 0.7717 4.4550 39 1 5.9090 1.8884 4.8288 40 1 5.7077 0.8895 7.0899 41 1 7.0424 -0.2270 6.7153 42 1 9.2231 2.8574 9.5155 43 1 2.1497 -1.2252 4.0432 44 1 2.8136 0.4281 4.1411 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691656654.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:04 Heat of formation + Delta-G solvation = -80.512154 kcal Electronic energy + Delta-G solvation = -19628.402124 eV Core-core repulsion = 16772.266410 eV Total energy + Delta-G solvation = -2856.135714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.00766 -38.36848 -35.88406 -35.51568 -33.73430 -31.57849 -29.59608 -28.83562 -27.98554 -26.26588 -24.42558 -23.52275 -21.65636 -21.28495 -20.49447 -18.87924 -17.93462 -17.10340 -16.56347 -16.31624 -16.00289 -15.72434 -15.25914 -14.99269 -14.90392 -14.60749 -14.34481 -13.89138 -13.69364 -13.40444 -13.08744 -12.89115 -12.80901 -12.64359 -12.57034 -12.45899 -12.31364 -12.05503 -11.80778 -11.62525 -11.60051 -11.49832 -11.42016 -11.30780 -11.15268 -10.76535 -10.50722 -9.28066 -8.29711 -6.34109 1.35138 1.37807 1.49947 2.36166 2.83300 2.97784 3.05498 3.46992 3.83290 4.04373 4.06247 4.09297 4.14589 4.23257 4.25934 4.37971 4.49647 4.57443 4.64397 4.65444 4.75433 4.78420 4.82985 4.87539 4.90005 4.92804 4.94820 4.99504 5.01650 5.10238 5.14153 5.20726 5.24215 5.48673 5.52731 5.55504 5.59250 5.66202 5.97949 6.09845 6.19722 6.29991 6.74261 7.30472 8.87459 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.038189 B = 0.003734 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.017580 B = 7496.458394 C = 7647.354035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.144 4.144 4 C 0.077 3.923 5 H 0.079 0.921 6 C -0.141 4.141 7 C 0.049 3.951 8 H 0.060 0.940 9 N -0.543 5.543 10 C 0.022 3.978 11 C 0.061 3.939 12 C -0.087 4.087 13 C -0.009 4.009 14 C -0.533 4.533 15 H 0.028 0.972 16 C 0.001 3.999 17 N -0.954 5.954 18 Si 0.954 3.046 19 H -0.265 1.265 20 H -0.284 1.284 21 H -0.245 1.245 22 C 0.053 3.947 23 O -0.385 6.385 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.036 0.964 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.020 0.980 41 H 0.019 0.981 42 H 0.266 0.734 43 H 0.068 0.932 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.981 -12.144 -18.306 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.201 4.201 4 C 0.020 3.980 5 H 0.096 0.904 6 C -0.179 4.179 7 C -0.059 4.059 8 H 0.078 0.922 9 N -0.267 5.267 10 C -0.125 4.125 11 C -0.066 4.066 12 C -0.125 4.125 13 C -0.047 4.047 14 C -0.571 4.571 15 H 0.047 0.953 16 C -0.195 4.195 17 N -0.594 5.594 18 Si 0.777 3.223 19 H -0.190 1.190 20 H -0.210 1.210 21 H -0.168 1.168 22 C -0.025 4.025 23 O -0.304 6.304 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.198 -11.437 -18.247 26.947 hybrid contribution 0.779 -0.791 1.195 1.631 sum -15.419 -12.228 -17.052 26.039 Atomic orbital electron populations 1.21765 0.94483 1.02046 1.01731 1.21169 0.96612 0.96602 0.96076 1.21788 1.00892 0.96023 1.01415 1.23322 0.93275 0.95343 0.86050 0.90366 1.23351 0.96135 1.04224 0.94143 1.23066 0.91259 0.95119 0.96468 0.92174 1.62085 1.06288 1.54364 1.04010 1.22446 0.92269 0.99248 0.98570 1.22130 0.99068 0.97324 0.88120 1.21283 0.97516 0.98054 0.95682 1.19488 0.95393 0.95400 0.94442 1.21511 1.24865 1.15758 0.95003 0.95338 1.26079 0.94854 0.97563 1.01037 1.70077 1.33832 1.36548 1.18992 0.85601 0.80461 0.78828 0.77408 1.19022 1.20965 1.16843 1.23214 0.88317 1.00040 0.90902 1.88871 1.55602 1.65130 1.20801 0.93764 0.91746 0.92042 0.88275 0.92711 0.91927 0.93937 0.89475 0.88534 0.89804 0.92114 0.95088 0.90704 0.94563 0.93310 0.93620 0.96178 0.96306 0.92484 0.91363 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.11 71.98 0.66 -1.45 16 2 C -0.09 -1.32 2.88 -10.80 -0.03 -1.35 16 3 C -0.14 -2.59 8.75 71.98 0.63 -1.96 16 4 C 0.08 1.38 3.05 31.27 0.10 1.48 16 5 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 6 C -0.14 -2.49 4.94 31.90 0.16 -2.34 16 7 C 0.05 1.09 2.76 45.91 0.13 1.21 16 8 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 9 N -0.54 -14.72 4.54 -891.22 -4.05 -18.77 16 10 C 0.02 0.54 9.06 127.69 1.16 1.70 16 11 C 0.06 1.91 4.75 86.30 0.41 2.32 16 12 C -0.09 -3.51 5.08 30.60 0.16 -3.35 16 13 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 14 C -0.53 -31.68 9.66 25.60 0.25 -31.43 16 15 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 16 C 0.00 0.06 5.47 84.66 0.46 0.52 16 17 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 18 Si 0.95 44.83 27.47 68.60 1.88 46.71 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 22 C 0.05 1.24 6.83 72.35 0.49 1.74 16 23 O -0.38 -9.41 10.03 -148.98 -1.49 -10.91 16 24 H 0.04 0.82 7.90 -2.38 -0.02 0.80 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.01 6.16 -2.39 -0.01 1.00 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.04 0.96 7.59 -2.38 -0.02 0.94 16 31 H 0.09 1.73 5.14 -2.39 -0.01 1.72 16 32 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.08 1.67 6.64 -2.39 -0.02 1.65 16 34 H 0.06 1.68 6.30 -2.39 -0.02 1.66 16 35 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 2.28 6.43 -2.39 -0.02 2.26 16 37 H 0.04 1.09 8.12 -2.39 -0.02 1.07 16 38 H 0.05 1.98 6.47 -2.39 -0.02 1.96 16 39 H 0.04 1.95 8.14 -2.39 -0.02 1.94 16 40 H 0.02 0.93 7.20 -2.39 -0.02 0.92 16 41 H 0.02 0.85 7.57 -2.39 -0.02 0.84 16 42 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.08 2.11 6.74 -2.38 -0.02 2.10 16 Total: -1.00 -67.71 333.13 2.20 -65.51 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.88 Total: 11.52 kcal Atomic # 6 Polarization: -37.91 SS G_CDS: 4.68 Total: -33.23 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -3.75 Total: -79.61 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -1.49 Total: -10.91 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.71 kcal Total: -67.71 2.20 -65.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691656654.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.999 kcal (2) G-P(sol) polarization free energy of solvation -67.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds