Wall clock time and date at job start Mon Mar 30 2020 06:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47267 * 2 1 4 4 C 1.53000 * 109.47252 * 120.00285 * 2 1 3 5 5 H 1.08995 * 109.86805 * 300.44556 * 4 2 1 6 6 C 1.54102 * 109.87822 * 179.28383 * 4 2 1 7 7 C 1.54814 * 104.18922 * 238.54610 * 6 4 2 8 8 H 1.08998 * 110.90655 * 97.31230 * 7 6 4 9 9 N 1.46896 * 110.91081 * 220.92319 * 7 6 4 10 10 C 1.46897 * 111.00308 * 173.05555 * 9 7 6 11 11 C 1.46901 * 110.99902 * 297.01372 * 9 7 6 12 12 C 1.52993 * 109.47128 * 169.99875 * 11 9 7 13 13 C 1.53003 * 109.47260 * 179.97438 * 12 11 9 14 14 C 1.50704 * 109.47322 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99548 * 359.97438 * 14 13 12 16 16 C 1.37868 * 119.99998 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00072 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00299 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47521 * 89.99274 * 18 16 14 20 20 H 1.48499 * 109.47590 * 209.99907 * 18 16 14 21 21 H 1.48510 * 109.47004 * 329.99953 * 18 16 14 22 22 C 1.55005 * 102.09055 * 339.12315 * 7 6 4 23 23 O 1.43746 * 109.87774 * 61.45442 * 4 2 1 24 24 H 1.08998 * 109.46842 * 59.99664 * 1 2 3 25 25 H 1.09000 * 109.47379 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47073 * 300.00071 * 1 2 3 27 27 H 1.09002 * 109.47244 * 240.00449 * 2 1 3 28 28 H 1.09002 * 109.46622 * 60.00068 * 3 2 1 29 29 H 1.09002 * 109.47243 * 180.02562 * 3 2 1 30 30 H 1.08992 * 109.47103 * 300.00128 * 3 2 1 31 31 H 1.09001 * 110.48900 * 357.22287 * 6 4 2 32 32 H 1.08998 * 110.48900 * 119.87411 * 6 4 2 33 33 H 1.08999 * 109.47118 * 65.56644 * 10 9 7 34 34 H 1.08993 * 109.47143 * 185.56785 * 10 9 7 35 35 H 1.09008 * 109.46961 * 305.56519 * 10 9 7 36 36 H 1.09002 * 109.46723 * 289.99464 * 11 9 7 37 37 H 1.08993 * 109.47110 * 49.99367 * 11 9 7 38 38 H 1.08997 * 109.47414 * 300.00009 * 12 11 9 39 39 H 1.09001 * 109.47468 * 59.99416 * 12 11 9 40 40 H 1.09002 * 109.46861 * 299.99753 * 13 12 11 41 41 H 1.08993 * 109.46841 * 59.99576 * 13 12 11 42 42 H 0.97003 * 120.00236 * 179.97438 * 17 16 14 43 43 H 1.08999 * 110.61449 * 278.52527 * 22 7 6 44 44 H 1.08999 * 110.61691 * 155.52371 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6738 -0.2172 2.1435 6 6 3.5809 -0.7425 1.2496 7 6 3.9397 -2.2478 1.2940 8 1 4.1558 -2.6258 0.2948 9 7 5.0700 -2.4908 2.2003 10 6 5.3070 -3.9303 2.3721 11 6 6.2820 -1.8107 1.7244 12 6 7.3613 -1.8754 2.8068 13 6 8.6239 -1.1676 2.3110 14 6 9.6873 -1.2318 3.3769 15 1 9.4829 -1.7274 4.3144 16 6 10.9207 -0.6568 3.1556 17 7 11.1695 -0.0528 2.0141 18 14 12.2387 -0.7357 4.4770 19 1 13.0538 -1.9629 4.2907 20 1 13.1136 0.4598 4.3757 21 1 11.5962 -0.7669 5.8156 22 6 2.6375 -2.8756 1.8531 23 8 1.5939 -2.0878 1.2409 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 3.9690 -0.2845 0.3398 32 1 3.9692 -0.2316 2.1307 33 1 5.6282 -4.3613 1.4238 34 1 6.0827 -4.0839 3.1222 35 1 4.3859 -4.4140 2.6976 36 1 6.6434 -2.3023 0.8212 37 1 6.0509 -0.7688 1.5034 38 1 7.0000 -1.3840 3.7101 39 1 7.5924 -2.9174 3.0279 40 1 8.9852 -1.6595 1.4078 41 1 8.3931 -0.1256 2.0897 42 1 12.0372 0.3520 1.8586 43 1 2.6019 -2.7827 2.9386 44 1 2.5556 -3.9204 1.5534 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691656657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:07 Heat of formation + Delta-G solvation = -69.068890 kcal Electronic energy + Delta-G solvation = -19494.519872 eV Core-core repulsion = 16638.880375 eV Total energy + Delta-G solvation = -2855.639497 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.03554 -37.16243 -35.16480 -33.67704 -31.69995 -30.53348 -28.17024 -27.24835 -26.91475 -25.10959 -22.79922 -22.47282 -20.56727 -20.09816 -19.67126 -16.62078 -16.44908 -16.22187 -15.65531 -14.74780 -14.61548 -14.29506 -14.18643 -13.75229 -13.53363 -13.28222 -13.07644 -12.60771 -12.35222 -12.30320 -12.09426 -11.80775 -11.51413 -11.30056 -11.25877 -11.06934 -10.95381 -10.85649 -10.65864 -10.55868 -10.50087 -10.44799 -9.69026 -9.61409 -9.32166 -9.05022 -8.33887 -8.15323 -5.99127 -4.01202 3.32440 3.38615 3.42353 3.67139 4.14285 4.46014 4.47900 4.55005 4.84228 4.89786 5.04069 5.14478 5.20715 5.35964 5.36711 5.42676 5.48856 5.51556 5.57790 5.65283 5.69892 5.71291 5.77817 5.83003 5.91283 5.94682 5.98309 6.08125 6.09905 6.17217 6.21158 6.31574 6.68226 6.73157 6.84679 7.10979 7.32370 7.34550 7.68924 7.83678 8.01253 8.44608 9.05996 9.62829 11.12324 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.031277 B = 0.003719 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.021518 B = 7526.540458 C = 8175.440328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.150 4.150 4 C 0.085 3.915 5 H 0.068 0.932 6 C -0.145 4.145 7 C 0.049 3.951 8 H 0.053 0.947 9 N -0.532 5.532 10 C 0.021 3.979 11 C 0.055 3.945 12 C -0.104 4.104 13 C 0.022 3.978 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.056 3.944 23 O -0.375 6.375 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.023 0.977 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.028 0.972 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.013 0.987 41 H 0.015 0.985 42 H 0.260 0.740 43 H 0.071 0.929 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.591 -2.192 -3.557 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.207 4.207 4 C 0.027 3.973 5 H 0.086 0.914 6 C -0.183 4.183 7 C -0.060 4.060 8 H 0.071 0.929 9 N -0.257 5.257 10 C -0.127 4.127 11 C -0.072 4.072 12 C -0.142 4.142 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.021 4.021 23 O -0.293 6.293 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.042 0.958 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.031 0.969 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.792 -1.967 -3.280 20.159 hybrid contribution 1.336 -0.296 -0.084 1.371 sum -18.457 -2.263 -3.364 18.897 Atomic orbital electron populations 1.21760 0.94804 1.02171 1.01270 1.21270 0.96447 0.95989 0.97661 1.21873 1.01648 0.95164 1.02017 1.22770 0.93193 0.83564 0.97802 0.91410 1.23083 0.95015 0.96311 1.03910 1.23172 0.92121 0.95744 0.95002 0.92943 1.62178 1.05543 1.10836 1.47125 1.22437 1.01778 0.87771 1.00739 1.22344 0.89044 0.98273 0.97543 1.21649 0.95016 1.00598 0.96977 1.19070 0.90658 0.95413 0.96419 1.21249 0.97525 1.35411 1.01457 0.92683 1.25027 0.98570 0.95381 0.95544 1.69968 1.22872 1.37204 1.23579 0.86600 0.81728 0.77474 0.82239 1.20714 1.21238 1.19841 1.23552 0.85216 0.95281 0.98041 1.88841 1.41021 1.17891 1.81576 0.92971 0.92053 0.92892 0.90727 0.92458 0.91978 0.92312 0.90327 0.89206 0.95795 0.90398 0.92020 0.95324 0.91100 0.92613 0.93416 0.96880 0.96640 0.93048 0.91123 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.07 37.16 0.34 -0.95 16 2 C -0.10 -0.93 2.57 -90.62 -0.23 -1.16 16 3 C -0.15 -1.31 8.94 37.16 0.33 -0.98 16 4 C 0.08 0.95 2.98 -26.16 -0.08 0.87 16 5 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 6 C -0.15 -1.76 4.48 -25.20 -0.11 -1.87 16 7 C 0.05 0.63 2.80 -65.70 -0.18 0.45 16 8 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 9 N -0.53 -7.85 4.60 -232.48 -1.07 -8.92 16 10 C 0.02 0.28 9.13 60.06 0.55 0.83 16 11 C 0.05 0.95 4.83 -3.83 -0.02 0.93 16 12 C -0.10 -2.17 5.08 -26.73 -0.14 -2.30 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 18 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.06 0.66 6.06 38.22 0.23 0.89 16 23 O -0.37 -4.70 10.60 -35.23 -0.37 -5.08 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.60 7.74 -51.93 -0.40 0.20 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.57 6.58 -51.93 -0.34 0.23 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.92 6.54 -51.93 -0.34 0.58 16 32 H 0.09 1.17 7.85 -51.93 -0.41 0.76 16 33 H 0.02 0.31 8.13 -51.93 -0.42 -0.11 16 34 H 0.08 1.10 6.55 -51.93 -0.34 0.76 16 35 H 0.06 0.68 6.82 -51.92 -0.35 0.33 16 36 H 0.03 0.51 8.11 -51.93 -0.42 0.09 16 37 H 0.07 1.22 6.83 -51.93 -0.35 0.87 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.05 0.97 6.59 -51.93 -0.34 0.63 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.90 7.89 -51.93 -0.41 0.49 16 LS Contribution 340.06 15.07 5.12 5.12 Total: -1.00 -30.01 340.06 -8.79 -38.80 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -8.33 Total: -3.84 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 0.14 Total: -16.48 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: -0.33 Total: -35.29 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.37 Total: -5.08 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.01 -8.79 -38.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691656657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.270 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds