Wall clock time and date at job start Mon Mar 30 2020 06:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47267 * 2 1 4 4 C 1.53000 * 109.47252 * 120.00285 * 2 1 3 5 5 H 1.08995 * 109.86805 * 300.44556 * 4 2 1 6 6 C 1.54102 * 109.87822 * 179.28383 * 4 2 1 7 7 C 1.54814 * 104.18922 * 238.54610 * 6 4 2 8 8 H 1.08998 * 110.90655 * 97.31230 * 7 6 4 9 9 N 1.46896 * 110.91081 * 220.92319 * 7 6 4 10 10 C 1.46897 * 111.00308 * 173.05555 * 9 7 6 11 11 C 1.46901 * 110.99902 * 297.01372 * 9 7 6 12 12 C 1.52993 * 109.47128 * 169.99875 * 11 9 7 13 13 C 1.53003 * 109.47260 * 179.97438 * 12 11 9 14 14 C 1.50704 * 109.47322 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99548 * 359.97438 * 14 13 12 16 16 C 1.37868 * 119.99998 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00072 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00299 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47521 * 89.99274 * 18 16 14 20 20 H 1.48499 * 109.47590 * 209.99907 * 18 16 14 21 21 H 1.48510 * 109.47004 * 329.99953 * 18 16 14 22 22 C 1.55005 * 102.09055 * 339.12315 * 7 6 4 23 23 O 1.43746 * 109.87774 * 61.45442 * 4 2 1 24 24 H 1.08998 * 109.46842 * 59.99664 * 1 2 3 25 25 H 1.09000 * 109.47379 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47073 * 300.00071 * 1 2 3 27 27 H 1.09002 * 109.47244 * 240.00449 * 2 1 3 28 28 H 1.09002 * 109.46622 * 60.00068 * 3 2 1 29 29 H 1.09002 * 109.47243 * 180.02562 * 3 2 1 30 30 H 1.08992 * 109.47103 * 300.00128 * 3 2 1 31 31 H 1.09001 * 110.48900 * 357.22287 * 6 4 2 32 32 H 1.08998 * 110.48900 * 119.87411 * 6 4 2 33 33 H 1.08999 * 109.47118 * 65.56644 * 10 9 7 34 34 H 1.08993 * 109.47143 * 185.56785 * 10 9 7 35 35 H 1.09008 * 109.46961 * 305.56519 * 10 9 7 36 36 H 1.09002 * 109.46723 * 289.99464 * 11 9 7 37 37 H 1.08993 * 109.47110 * 49.99367 * 11 9 7 38 38 H 1.08997 * 109.47414 * 300.00009 * 12 11 9 39 39 H 1.09001 * 109.47468 * 59.99416 * 12 11 9 40 40 H 1.09002 * 109.46861 * 299.99753 * 13 12 11 41 41 H 1.08993 * 109.46841 * 59.99576 * 13 12 11 42 42 H 0.97003 * 120.00236 * 179.97438 * 17 16 14 43 43 H 1.08999 * 110.61449 * 278.52527 * 22 7 6 44 44 H 1.08999 * 110.61691 * 155.52371 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6738 -0.2172 2.1435 6 6 3.5809 -0.7425 1.2496 7 6 3.9397 -2.2478 1.2940 8 1 4.1558 -2.6258 0.2948 9 7 5.0700 -2.4908 2.2003 10 6 5.3070 -3.9303 2.3721 11 6 6.2820 -1.8107 1.7244 12 6 7.3613 -1.8754 2.8068 13 6 8.6239 -1.1676 2.3110 14 6 9.6873 -1.2318 3.3769 15 1 9.4829 -1.7274 4.3144 16 6 10.9207 -0.6568 3.1556 17 7 11.1695 -0.0528 2.0141 18 14 12.2387 -0.7357 4.4770 19 1 13.0538 -1.9629 4.2907 20 1 13.1136 0.4598 4.3757 21 1 11.5962 -0.7669 5.8156 22 6 2.6375 -2.8756 1.8531 23 8 1.5939 -2.0878 1.2409 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 3.9690 -0.2845 0.3398 32 1 3.9692 -0.2316 2.1307 33 1 5.6282 -4.3613 1.4238 34 1 6.0827 -4.0839 3.1222 35 1 4.3859 -4.4140 2.6976 36 1 6.6434 -2.3023 0.8212 37 1 6.0509 -0.7688 1.5034 38 1 7.0000 -1.3840 3.7101 39 1 7.5924 -2.9174 3.0279 40 1 8.9852 -1.6595 1.4078 41 1 8.3931 -0.1256 2.0897 42 1 12.0372 0.3520 1.8586 43 1 2.6019 -2.7827 2.9386 44 1 2.5556 -3.9204 1.5534 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691656657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:07 Heat of formation + Delta-G solvation = -86.929752 kcal Electronic energy + Delta-G solvation = -19495.294377 eV Core-core repulsion = 16638.880375 eV Total energy + Delta-G solvation = -2856.414002 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.01370 -38.37696 -36.07043 -35.57074 -33.46908 -31.70271 -29.45140 -28.27863 -27.93403 -26.65819 -24.17503 -23.69217 -21.78498 -21.47899 -20.75257 -18.47020 -17.65991 -17.36002 -16.59314 -16.51841 -16.02257 -15.67199 -15.25901 -14.87904 -14.54529 -14.36592 -14.23693 -13.95257 -13.74600 -13.46966 -13.19983 -13.00387 -12.92379 -12.72679 -12.59145 -12.46636 -12.25153 -12.08196 -11.91739 -11.84683 -11.59870 -11.44047 -11.40351 -11.32592 -11.07135 -10.59195 -10.55149 -9.36007 -8.20312 -6.31309 1.40056 1.41347 1.52719 2.40635 2.67829 3.05557 3.12874 3.52403 3.66495 3.94778 4.07224 4.08051 4.18217 4.22651 4.27215 4.37798 4.52304 4.54791 4.60949 4.69790 4.72029 4.74297 4.82627 4.83856 4.90917 4.95278 5.00571 5.01743 5.03715 5.08922 5.16162 5.24092 5.26122 5.42057 5.46243 5.52053 5.73462 5.85483 5.86832 6.02903 6.17103 6.27019 6.85500 7.38009 8.91609 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.031277 B = 0.003719 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.021518 B = 7526.540458 C = 8175.440328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 C -0.147 4.147 4 C 0.086 3.914 5 H 0.071 0.929 6 C -0.144 4.144 7 C 0.047 3.953 8 H 0.050 0.950 9 N -0.535 5.535 10 C 0.019 3.981 11 C 0.067 3.933 12 C -0.089 4.089 13 C 0.026 3.974 14 C -0.542 4.542 15 H 0.059 0.941 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.965 3.035 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.263 1.263 22 C 0.061 3.939 23 O -0.384 6.384 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.025 0.975 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.022 0.978 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.051 0.949 40 H -0.011 1.011 41 H -0.008 1.008 42 H 0.264 0.736 43 H 0.071 0.929 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.409 -2.652 -2.798 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 C -0.205 4.205 4 C 0.028 3.972 5 H 0.089 0.911 6 C -0.182 4.182 7 C -0.062 4.062 8 H 0.068 0.932 9 N -0.260 5.260 10 C -0.129 4.129 11 C -0.060 4.060 12 C -0.127 4.127 13 C -0.011 4.011 14 C -0.580 4.580 15 H 0.077 0.923 16 C -0.199 4.199 17 N -0.574 5.574 18 Si 0.789 3.211 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.187 1.187 22 C -0.016 4.016 23 O -0.303 6.303 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.041 0.959 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.007 0.993 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.630 -2.439 -2.517 20.926 hybrid contribution 1.563 -0.152 -0.350 1.609 sum -19.067 -2.591 -2.867 19.455 Atomic orbital electron populations 1.21728 0.94033 1.01789 1.02113 1.21266 0.97063 0.96275 0.96619 1.21857 1.01159 0.94648 1.02809 1.22820 0.92372 0.83290 0.98697 0.91137 1.23061 0.95850 0.95793 1.03459 1.23219 0.91911 0.96449 0.94574 0.93165 1.62107 1.04689 1.11700 1.47466 1.22504 1.02882 0.86902 1.00601 1.22046 0.89388 0.98662 0.95920 1.21386 0.93777 0.99868 0.97624 1.18965 0.92700 0.94313 0.95160 1.21686 0.98587 1.35609 1.02148 0.92270 1.25983 1.01150 0.94774 0.97958 1.70098 1.23700 1.37948 1.25658 0.85448 0.78483 0.77779 0.79351 1.19758 1.20693 1.18733 1.23565 0.84070 0.95947 0.97986 1.88839 1.41332 1.18460 1.81698 0.91753 0.93007 0.92459 0.91343 0.92000 0.92722 0.91208 0.90230 0.90262 0.95633 0.91396 0.89402 0.95939 0.91279 0.92927 0.93020 0.99284 0.98978 0.92772 0.91053 0.87806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.07 71.98 0.65 -1.64 16 2 C -0.09 -1.72 2.57 -10.79 -0.03 -1.74 16 3 C -0.15 -2.40 8.94 71.98 0.64 -1.76 16 4 C 0.09 1.83 2.98 30.97 0.09 1.92 16 5 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 6 C -0.14 -3.38 4.48 31.59 0.14 -3.24 16 7 C 0.05 1.17 2.80 46.22 0.13 1.30 16 8 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 9 N -0.53 -15.25 4.60 -889.42 -4.10 -19.34 16 10 C 0.02 0.47 9.13 127.69 1.17 1.64 16 11 C 0.07 2.35 4.83 86.30 0.42 2.76 16 12 C -0.09 -3.71 5.08 30.59 0.16 -3.55 16 13 C 0.03 1.40 4.97 29.85 0.15 1.55 16 14 C -0.54 -31.29 9.11 25.60 0.23 -31.06 16 15 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 16 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 17 N -0.93 -57.26 13.29 21.44 0.28 -56.98 16 18 Si 0.97 44.55 29.54 68.60 2.03 46.57 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 22 C 0.06 1.31 6.06 72.67 0.44 1.75 16 23 O -0.38 -9.04 10.60 -148.98 -1.58 -10.62 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.05 0.95 7.74 -2.39 -0.02 0.93 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 0.97 6.58 -2.39 -0.02 0.95 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 1.84 6.54 -2.39 -0.02 1.82 16 32 H 0.08 2.04 7.85 -2.39 -0.02 2.02 16 33 H 0.03 0.63 8.13 -2.39 -0.02 0.61 16 34 H 0.07 1.83 6.55 -2.39 -0.02 1.82 16 35 H 0.09 1.73 6.82 -2.38 -0.02 1.71 16 36 H 0.02 0.80 8.11 -2.39 -0.02 0.78 16 37 H 0.07 2.41 6.83 -2.39 -0.02 2.39 16 38 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.05 2.10 6.59 -2.39 -0.02 2.09 16 40 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 41 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 43 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.10 1.88 7.89 -2.39 -0.02 1.86 16 Total: -1.00 -63.70 340.06 2.21 -61.49 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.92 Total: 10.55 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 4.65 Total: -31.68 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -3.81 Total: -76.32 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -1.58 Total: -10.62 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -63.70 2.21 -61.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691656657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.442 kcal (2) G-P(sol) polarization free energy of solvation -63.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds