Wall clock time and date at job start Mon Mar 30 2020 06:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47135 * 2 1 4 4 C 1.53005 * 109.46794 * 119.99854 * 2 1 3 5 5 H 1.08995 * 109.99105 * 59.63476 * 4 2 1 6 6 C 1.54171 * 109.84880 * 180.72492 * 4 2 1 7 7 C 1.54810 * 104.15542 * 121.48982 * 6 4 2 8 8 H 1.09007 * 110.90583 * 262.62500 * 7 6 4 9 9 N 1.46898 * 110.90778 * 139.05834 * 7 6 4 10 10 C 1.46897 * 110.99938 * 58.97039 * 9 7 6 11 11 C 1.46902 * 111.00019 * 182.92294 * 9 7 6 12 12 C 1.52994 * 109.46988 * 169.99490 * 11 9 7 13 13 C 1.52996 * 109.47119 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.54991 * 102.12571 * 20.83647 * 7 6 4 23 23 O 1.43742 * 109.88190 * 298.54404 * 4 2 1 24 24 H 1.09002 * 109.47047 * 59.99612 * 1 2 3 25 25 H 1.09000 * 109.47164 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47337 * 300.00133 * 1 2 3 27 27 H 1.08998 * 109.47337 * 239.99867 * 2 1 3 28 28 H 1.09000 * 109.47158 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47470 * 300.00129 * 3 2 1 30 30 H 1.09002 * 109.47057 * 60.00241 * 3 2 1 31 31 H 1.09000 * 110.51702 * 2.81130 * 6 4 2 32 32 H 1.08998 * 110.47794 * 240.14696 * 6 4 2 33 33 H 1.09005 * 109.47014 * 183.95911 * 10 9 7 34 34 H 1.09008 * 109.47403 * 303.95302 * 10 9 7 35 35 H 1.08996 * 109.47141 * 63.95802 * 10 9 7 36 36 H 1.08998 * 109.46869 * 50.00317 * 11 9 7 37 37 H 1.08994 * 109.47040 * 290.00020 * 11 9 7 38 38 H 1.09004 * 109.46806 * 60.00264 * 12 11 9 39 39 H 1.09000 * 109.47828 * 300.00569 * 12 11 9 40 40 H 1.09004 * 109.47066 * 60.00422 * 13 12 11 41 41 H 1.08994 * 109.47405 * 300.00252 * 13 12 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 43 43 H 1.09001 * 110.61675 * 81.49814 * 22 7 6 44 44 H 1.09002 * 110.62169 * 204.33338 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6759 -1.7486 1.2612 6 6 3.5815 -0.7105 1.2674 7 6 3.9396 0.0030 2.5938 8 1 4.1561 1.0574 2.4221 9 7 5.0698 -0.6605 3.2574 10 6 6.2562 -0.6711 2.3913 11 6 5.3669 -0.0277 4.5494 12 6 6.3716 -0.8872 5.3191 13 6 6.6805 -0.2286 6.6651 14 6 7.6707 -1.0749 7.4230 15 1 8.0428 -1.9908 6.9881 16 6 8.1063 -0.6768 8.6692 17 7 7.6535 0.4386 9.1987 18 14 9.3395 -1.7220 9.6053 19 1 10.7176 -1.2903 9.2596 20 1 9.1207 -1.5574 11.0649 21 1 9.1604 -3.1491 9.2358 22 6 2.6374 -0.1673 3.4169 23 8 1.5938 -0.0310 2.4286 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.9696 -0.1510 0.4163 32 1 3.9700 -1.7289 1.2650 33 1 7.0563 -1.2290 2.8779 34 1 6.0085 -1.1450 1.4414 35 1 6.5843 0.3527 2.2119 36 1 4.4482 0.0639 5.1288 37 1 5.7901 0.9624 4.3803 38 1 7.2903 -0.9789 4.7397 39 1 5.9484 -1.8774 5.4882 40 1 5.7617 -0.1373 7.2443 41 1 7.1036 0.7616 6.4964 42 1 7.9598 0.7185 10.0755 43 1 2.6017 -1.1538 3.8792 44 1 2.5568 0.6130 4.1738 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691656659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:10 Heat of formation + Delta-G solvation = -66.962359 kcal Electronic energy + Delta-G solvation = -19540.061986 eV Core-core repulsion = 16684.513835 eV Total energy + Delta-G solvation = -2855.548150 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.10891 -37.17948 -34.92368 -33.71591 -31.81546 -30.19468 -28.55831 -27.28771 -26.94033 -24.82146 -23.37659 -22.26392 -20.24522 -19.97811 -19.87753 -16.72975 -16.20714 -16.08200 -15.87188 -14.75352 -14.53152 -14.34776 -14.17228 -13.83067 -13.67015 -13.57692 -12.93313 -12.46321 -12.28027 -12.24732 -12.03373 -11.82383 -11.47175 -11.41894 -11.29138 -11.06280 -10.87839 -10.82564 -10.71177 -10.65561 -10.47173 -10.41793 -9.64014 -9.60713 -9.32041 -9.04835 -8.33303 -8.15082 -5.98566 -4.00575 3.32854 3.39047 3.42784 3.71198 4.17421 4.41412 4.48302 4.53000 4.82565 4.86330 4.96838 5.08949 5.21650 5.36481 5.37258 5.43173 5.49033 5.55443 5.58218 5.66194 5.72610 5.74692 5.77926 5.85701 5.88804 5.89975 5.92913 6.04898 6.10141 6.15634 6.22882 6.30874 6.67682 6.73219 6.88328 7.11355 7.31560 7.35281 7.69546 7.84318 8.01863 8.45161 9.06616 9.63360 11.12916 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.050401 B = 0.003378 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.409712 B = 8285.871780 C = 8478.165378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.146 4.146 4 C 0.083 3.917 5 H 0.067 0.933 6 C -0.146 4.146 7 C 0.051 3.949 8 H 0.053 0.947 9 N -0.532 5.532 10 C 0.023 3.977 11 C 0.053 3.947 12 C -0.104 4.104 13 C 0.022 3.978 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.055 3.945 23 O -0.370 6.370 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.022 0.978 36 H 0.070 0.930 37 H 0.029 0.971 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.016 0.984 41 H 0.013 0.987 42 H 0.260 0.740 43 H 0.073 0.927 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.108 -0.313 -19.132 22.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.204 4.204 4 C 0.025 3.975 5 H 0.085 0.915 6 C -0.184 4.184 7 C -0.058 4.058 8 H 0.071 0.929 9 N -0.257 5.257 10 C -0.125 4.125 11 C -0.074 4.074 12 C -0.142 4.142 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.022 4.022 23 O -0.289 6.289 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.034 0.966 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.446 -0.575 -18.865 22.073 hybrid contribution 1.235 0.264 0.458 1.344 sum -10.210 -0.311 -18.407 21.051 Atomic orbital electron populations 1.21759 0.94739 1.01638 1.01971 1.21291 0.96567 0.96985 0.96419 1.21820 1.00829 0.95724 1.01985 1.22731 0.92973 0.95487 0.86291 0.91515 1.23105 0.95471 1.02341 0.97501 1.23154 0.92509 0.96384 0.93789 0.92937 1.62168 1.05402 1.53898 1.04239 1.22417 0.93219 0.99951 0.96935 1.22363 1.00262 0.96141 0.88622 1.21649 0.96146 0.98785 0.97640 1.19072 0.96603 0.95756 0.90151 1.21251 1.24970 1.07677 1.01766 0.92689 1.25032 0.96672 0.95178 0.97649 1.69969 1.44100 1.22400 1.17134 0.86598 0.81573 0.80806 0.79053 1.20724 1.21234 1.19848 1.23560 0.84793 1.02508 0.91305 1.88849 1.41008 1.75816 1.23186 0.93011 0.92934 0.91818 0.90536 0.92751 0.93032 0.91799 0.90529 0.89665 0.90473 0.91955 0.95955 0.91166 0.95222 0.93411 0.92580 0.96599 0.96871 0.93040 0.90916 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.06 37.16 0.34 -0.90 16 2 C -0.09 -0.84 2.72 -90.62 -0.25 -1.08 16 3 C -0.15 -1.32 8.77 37.16 0.33 -1.00 16 4 C 0.08 0.88 3.16 -26.12 -0.08 0.79 16 5 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 6 C -0.15 -1.54 4.64 -25.16 -0.12 -1.66 16 7 C 0.05 0.65 2.80 -65.71 -0.18 0.46 16 8 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 9 N -0.53 -7.82 4.61 -232.48 -1.07 -8.89 16 10 C 0.02 0.30 9.09 60.06 0.55 0.85 16 11 C 0.05 0.92 4.85 -3.83 -0.02 0.90 16 12 C -0.10 -2.16 5.08 -26.74 -0.14 -2.30 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 18 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.06 0.72 6.26 38.21 0.24 0.96 16 23 O -0.37 -4.72 9.89 -35.23 -0.35 -5.07 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.63 7.74 -51.93 -0.40 0.23 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.49 6.36 -51.93 -0.33 0.16 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.66 7.66 -51.93 -0.40 0.27 16 31 H 0.08 0.72 6.19 -51.93 -0.32 0.40 16 32 H 0.08 0.91 7.54 -51.93 -0.39 0.52 16 33 H 0.08 1.09 6.47 -51.93 -0.34 0.76 16 34 H 0.06 0.70 6.70 -51.92 -0.35 0.35 16 35 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 1.20 6.79 -51.93 -0.35 0.85 16 37 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.05 0.97 6.55 -51.93 -0.34 0.63 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.09 1.17 7.80 -51.93 -0.40 0.76 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -29.97 338.16 -8.73 -38.71 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -8.24 Total: -4.04 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 0.11 Total: -16.18 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: -0.33 Total: -35.33 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.35 Total: -5.07 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.97 -8.73 -38.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691656659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.255 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds