Wall clock time and date at job start Mon Mar 30 2020 06:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47135 * 2 1 4 4 C 1.53005 * 109.46794 * 119.99854 * 2 1 3 5 5 H 1.08995 * 109.99105 * 59.63476 * 4 2 1 6 6 C 1.54171 * 109.84880 * 180.72492 * 4 2 1 7 7 C 1.54810 * 104.15542 * 121.48982 * 6 4 2 8 8 H 1.09007 * 110.90583 * 262.62500 * 7 6 4 9 9 N 1.46898 * 110.90778 * 139.05834 * 7 6 4 10 10 C 1.46897 * 110.99938 * 58.97039 * 9 7 6 11 11 C 1.46902 * 111.00019 * 182.92294 * 9 7 6 12 12 C 1.52994 * 109.46988 * 169.99490 * 11 9 7 13 13 C 1.52996 * 109.47119 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.54991 * 102.12571 * 20.83647 * 7 6 4 23 23 O 1.43742 * 109.88190 * 298.54404 * 4 2 1 24 24 H 1.09002 * 109.47047 * 59.99612 * 1 2 3 25 25 H 1.09000 * 109.47164 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47337 * 300.00133 * 1 2 3 27 27 H 1.08998 * 109.47337 * 239.99867 * 2 1 3 28 28 H 1.09000 * 109.47158 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47470 * 300.00129 * 3 2 1 30 30 H 1.09002 * 109.47057 * 60.00241 * 3 2 1 31 31 H 1.09000 * 110.51702 * 2.81130 * 6 4 2 32 32 H 1.08998 * 110.47794 * 240.14696 * 6 4 2 33 33 H 1.09005 * 109.47014 * 183.95911 * 10 9 7 34 34 H 1.09008 * 109.47403 * 303.95302 * 10 9 7 35 35 H 1.08996 * 109.47141 * 63.95802 * 10 9 7 36 36 H 1.08998 * 109.46869 * 50.00317 * 11 9 7 37 37 H 1.08994 * 109.47040 * 290.00020 * 11 9 7 38 38 H 1.09004 * 109.46806 * 60.00264 * 12 11 9 39 39 H 1.09000 * 109.47828 * 300.00569 * 12 11 9 40 40 H 1.09004 * 109.47066 * 60.00422 * 13 12 11 41 41 H 1.08994 * 109.47405 * 300.00252 * 13 12 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 43 43 H 1.09001 * 110.61675 * 81.49814 * 22 7 6 44 44 H 1.09002 * 110.62169 * 204.33338 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6759 -1.7486 1.2612 6 6 3.5815 -0.7105 1.2674 7 6 3.9396 0.0030 2.5938 8 1 4.1561 1.0574 2.4221 9 7 5.0698 -0.6605 3.2574 10 6 6.2562 -0.6711 2.3913 11 6 5.3669 -0.0277 4.5494 12 6 6.3716 -0.8872 5.3191 13 6 6.6805 -0.2286 6.6651 14 6 7.6707 -1.0749 7.4230 15 1 8.0428 -1.9908 6.9881 16 6 8.1063 -0.6768 8.6692 17 7 7.6535 0.4386 9.1987 18 14 9.3395 -1.7220 9.6053 19 1 10.7176 -1.2903 9.2596 20 1 9.1207 -1.5574 11.0649 21 1 9.1604 -3.1491 9.2358 22 6 2.6374 -0.1673 3.4169 23 8 1.5938 -0.0310 2.4286 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.9696 -0.1510 0.4163 32 1 3.9700 -1.7289 1.2650 33 1 7.0563 -1.2290 2.8779 34 1 6.0085 -1.1450 1.4414 35 1 6.5843 0.3527 2.2119 36 1 4.4482 0.0639 5.1288 37 1 5.7901 0.9624 4.3803 38 1 7.2903 -0.9789 4.7397 39 1 5.9484 -1.8774 5.4882 40 1 5.7617 -0.1373 7.2443 41 1 7.1036 0.7616 6.4964 42 1 7.9598 0.7185 10.0755 43 1 2.6017 -1.1538 3.8792 44 1 2.5568 0.6130 4.1738 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691656659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:10 Heat of formation + Delta-G solvation = -84.862186 kcal Electronic energy + Delta-G solvation = -19540.838180 eV Core-core repulsion = 16684.513835 eV Total energy + Delta-G solvation = -2856.324345 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.06591 -38.38728 -35.84637 -35.54842 -33.55575 -31.45830 -29.53627 -28.58787 -27.98218 -26.30596 -24.51767 -23.70676 -21.68596 -21.23539 -20.74720 -18.49911 -17.67400 -17.03272 -16.82259 -16.50377 -15.99734 -15.57268 -15.13749 -14.94029 -14.86894 -14.50228 -14.28403 -13.85600 -13.64028 -13.47181 -13.09376 -13.00974 -12.78392 -12.69880 -12.52938 -12.49413 -12.26802 -12.10688 -12.03023 -11.62904 -11.56671 -11.50278 -11.38911 -11.29642 -11.04960 -10.55927 -10.55046 -9.35078 -8.20335 -6.31314 1.39929 1.41371 1.52742 2.40624 2.68388 3.12872 3.13766 3.49961 3.71805 3.96811 4.08899 4.10692 4.13786 4.20492 4.27624 4.34031 4.54312 4.57847 4.65272 4.70096 4.76570 4.78425 4.85335 4.87951 4.88545 4.95974 5.02187 5.05196 5.08897 5.11016 5.12418 5.23297 5.26661 5.44849 5.51091 5.52696 5.73560 5.85641 5.90699 6.03139 6.17953 6.27220 6.85654 7.37958 8.91662 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.050401 B = 0.003378 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.409712 B = 8285.871780 C = 8478.165378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 C -0.145 4.145 4 C 0.078 3.922 5 H 0.071 0.929 6 C -0.137 4.137 7 C 0.052 3.948 8 H 0.050 0.950 9 N -0.535 5.535 10 C 0.022 3.978 11 C 0.065 3.935 12 C -0.088 4.088 13 C 0.026 3.974 14 C -0.542 4.542 15 H 0.059 0.941 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.965 3.035 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.263 1.263 22 C 0.055 3.945 23 O -0.382 6.382 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.024 0.976 36 H 0.067 0.933 37 H 0.024 0.976 38 H 0.052 0.948 39 H 0.052 0.948 40 H -0.009 1.009 41 H -0.011 1.011 42 H 0.264 0.736 43 H 0.064 0.936 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.753 -1.396 -20.803 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C -0.202 4.202 4 C 0.020 3.980 5 H 0.089 0.911 6 C -0.174 4.174 7 C -0.057 4.057 8 H 0.068 0.932 9 N -0.260 5.260 10 C -0.126 4.126 11 C -0.063 4.063 12 C -0.126 4.126 13 C -0.012 4.012 14 C -0.580 4.580 15 H 0.078 0.922 16 C -0.199 4.199 17 N -0.574 5.574 18 Si 0.790 3.210 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.187 1.187 22 C -0.022 4.022 23 O -0.301 6.301 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.042 0.958 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.010 0.990 41 H 0.007 0.993 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.098 -1.665 -20.562 23.425 hybrid contribution 1.077 0.625 0.950 1.566 sum -10.021 -1.039 -19.611 22.048 Atomic orbital electron populations 1.21743 0.94628 1.01886 1.01721 1.21333 0.96675 0.96824 0.96212 1.21801 1.00877 0.95820 1.01691 1.22919 0.93041 0.95828 0.86190 0.91136 1.23068 0.95431 1.02377 0.96539 1.23165 0.91377 0.96415 0.94771 0.93195 1.62100 1.06562 1.53725 1.03604 1.22477 0.92312 1.00208 0.97600 1.22074 0.99035 0.95183 0.90009 1.21383 0.97364 0.98517 0.95355 1.18969 0.94874 0.94796 0.92551 1.21694 1.25624 1.08179 1.02531 0.92233 1.25997 0.98720 0.96466 0.98738 1.70101 1.45512 1.24155 1.17683 0.85441 0.78902 0.79252 0.77428 1.19714 1.20722 1.18719 1.23490 0.85295 1.01856 0.91554 1.88850 1.41106 1.76222 1.23896 0.91685 0.92459 0.93644 0.88487 0.92597 0.91719 0.93719 0.88852 0.89368 0.91537 0.89317 0.95777 0.91409 0.95778 0.92945 0.92909 0.99021 0.99262 0.92772 0.91731 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.06 71.98 0.65 -1.54 16 2 C -0.09 -1.42 2.72 -10.79 -0.03 -1.45 16 3 C -0.14 -2.34 8.77 71.98 0.63 -1.71 16 4 C 0.08 1.50 3.16 30.99 0.10 1.60 16 5 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 6 C -0.14 -2.56 4.64 31.61 0.15 -2.41 16 7 C 0.05 1.25 2.80 46.21 0.13 1.38 16 8 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 9 N -0.53 -15.15 4.61 -889.42 -4.10 -19.25 16 10 C 0.02 0.54 9.09 127.69 1.16 1.70 16 11 C 0.06 2.25 4.85 86.30 0.42 2.67 16 12 C -0.09 -3.70 5.08 30.59 0.16 -3.54 16 13 C 0.03 1.38 4.97 29.85 0.15 1.53 16 14 C -0.54 -31.39 9.11 25.60 0.23 -31.15 16 15 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 16 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 17 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 18 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 22 C 0.06 1.42 6.26 72.66 0.45 1.87 16 23 O -0.38 -9.51 9.89 -148.98 -1.47 -10.98 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.04 0.86 7.74 -2.39 -0.02 0.84 16 27 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 0.87 6.36 -2.39 -0.02 0.86 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.04 0.89 7.66 -2.39 -0.02 0.87 16 31 H 0.09 1.46 6.19 -2.39 -0.01 1.44 16 32 H 0.09 1.64 7.54 -2.39 -0.02 1.62 16 33 H 0.07 1.79 6.47 -2.38 -0.02 1.78 16 34 H 0.09 1.73 6.70 -2.38 -0.02 1.71 16 35 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 2.37 6.79 -2.39 -0.02 2.36 16 37 H 0.02 0.86 8.12 -2.39 -0.02 0.84 16 38 H 0.05 2.13 6.55 -2.38 -0.02 2.12 16 39 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 40 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 41 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 42 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 43 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.09 2.26 7.80 -2.39 -0.02 2.24 16 Total: -1.00 -64.33 338.16 2.33 -62.00 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.93 Total: 9.49 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 4.66 Total: -30.69 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -3.81 Total: -76.54 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -1.47 Total: -10.98 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -64.33 2.33 -62.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691656659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.866 kcal (2) G-P(sol) polarization free energy of solvation -64.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds