Wall clock time and date at job start Mon Mar 30 2020 06:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46841 * 2 1 4 4 C 1.53002 * 109.47078 * 119.99660 * 2 1 3 5 5 H 1.09002 * 109.82434 * 300.70433 * 4 2 1 6 6 C 1.54386 * 109.90472 * 179.76829 * 4 2 1 7 7 C 1.55306 * 102.25271 * 219.08621 * 6 4 2 8 8 H 1.09003 * 111.16317 * 276.20204 * 7 6 4 9 9 N 1.46897 * 111.12454 * 152.05133 * 7 6 4 10 10 C 1.46900 * 110.99902 * 63.03969 * 9 7 6 11 11 C 1.46904 * 111.00045 * 186.99027 * 9 7 6 12 12 C 1.52996 * 109.47268 * 170.00225 * 11 9 7 13 13 C 1.52991 * 109.47387 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47421 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00134 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00226 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99648 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00145 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47282 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47036 * 120.00455 * 18 16 14 21 21 H 1.48500 * 109.47413 * 240.00212 * 18 16 14 22 22 C 1.54950 * 100.94218 * 34.13402 * 7 6 4 23 23 O 1.43241 * 109.83035 * 61.58906 * 4 2 1 24 24 H 1.08991 * 109.47216 * 299.99960 * 1 2 3 25 25 H 1.08998 * 109.47043 * 60.00518 * 1 2 3 26 26 H 1.09009 * 109.46711 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47676 * 239.99776 * 2 1 3 28 28 H 1.08998 * 109.46879 * 299.99583 * 3 2 1 29 29 H 1.08991 * 109.47183 * 60.00020 * 3 2 1 30 30 H 1.09006 * 109.46818 * 180.02562 * 3 2 1 31 31 H 1.09000 * 110.84933 * 337.27932 * 6 4 2 32 32 H 1.09001 * 110.84623 * 100.89979 * 6 4 2 33 33 H 1.08995 * 109.47211 * 59.99938 * 10 9 7 34 34 H 1.09002 * 109.47265 * 180.02562 * 10 9 7 35 35 H 1.09009 * 109.46694 * 299.99537 * 10 9 7 36 36 H 1.09001 * 109.46838 * 290.00323 * 11 9 7 37 37 H 1.08999 * 109.46963 * 49.99836 * 11 9 7 38 38 H 1.09010 * 109.46927 * 300.00317 * 12 11 9 39 39 H 1.08999 * 109.47445 * 59.99907 * 12 11 9 40 40 H 1.08997 * 109.47415 * 300.00204 * 13 12 11 41 41 H 1.09009 * 109.47405 * 59.99903 * 13 12 11 42 42 H 0.97004 * 119.99684 * 179.97438 * 17 16 14 43 43 H 1.08992 * 110.31012 * 204.63970 * 22 7 6 44 44 H 1.09000 * 110.39363 * 82.50862 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6696 -0.2191 2.1431 6 6 3.5838 -0.7321 1.2565 7 6 3.9008 -2.1513 1.8018 8 1 3.8718 -2.1699 2.8913 9 7 5.1950 -2.6338 1.3016 10 6 6.2933 -1.7800 1.7736 11 6 5.4170 -4.0353 1.6817 12 6 6.6423 -4.5763 0.9423 13 6 6.8732 -6.0361 1.3376 14 6 8.0797 -6.5692 0.6088 15 1 8.6274 -5.9306 -0.0683 16 6 8.4851 -7.8720 0.8073 17 7 7.8185 -8.6497 1.6323 18 14 9.9810 -8.5326 -0.0955 19 1 10.5499 -7.4657 -0.9577 20 1 11.0021 -8.9683 0.8909 21 1 9.5808 -9.6888 -0.9370 22 6 2.7297 -2.9668 1.1981 23 8 1.5975 -2.0835 1.2386 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 3.9773 -0.6073 0.2477 32 1 3.9740 0.0360 1.9242 33 1 6.3155 -1.7860 2.8634 34 1 7.2398 -2.1593 1.3884 35 1 6.1394 -0.7608 1.4189 36 1 5.5846 -4.0979 2.7569 37 1 4.5413 -4.6271 1.4154 38 1 6.4748 -4.5136 -0.1331 39 1 7.5181 -3.9846 1.2086 40 1 7.0405 -6.0993 2.4128 41 1 5.9974 -6.6278 1.0709 42 1 8.1035 -9.5664 1.7717 43 1 2.5379 -3.8554 1.7993 44 1 2.9534 -3.2479 0.1690 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691656662.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:13 Heat of formation + Delta-G solvation = -70.025310 kcal Electronic energy + Delta-G solvation = -19435.088330 eV Core-core repulsion = 16579.407360 eV Total energy + Delta-G solvation = -2855.680970 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.05402 -37.18928 -35.09484 -33.71791 -31.82300 -30.24726 -28.59963 -27.25021 -26.92341 -24.84413 -23.15419 -22.28995 -20.54349 -20.03675 -19.67166 -17.01446 -16.50675 -16.22050 -15.07407 -14.88647 -14.56786 -14.43215 -14.17828 -13.86867 -13.71875 -13.14933 -12.95932 -12.49001 -12.40532 -12.35576 -12.26624 -11.79909 -11.64875 -11.34874 -11.25658 -11.05404 -10.95348 -10.88959 -10.78909 -10.66168 -10.47793 -10.41043 -9.61092 -9.48753 -9.32692 -9.03823 -8.33749 -8.17227 -5.98833 -4.00805 3.31880 3.39294 3.43698 3.65512 4.10182 4.36732 4.47746 4.56560 4.83296 4.83704 4.98983 5.09390 5.20568 5.30941 5.37015 5.40443 5.44847 5.50469 5.57285 5.65060 5.66012 5.69407 5.76859 5.83521 5.88590 5.91415 5.92883 6.05927 6.08891 6.15930 6.21659 6.29869 6.67543 6.74288 6.97794 7.10611 7.30161 7.33188 7.69534 7.83917 8.01645 8.44915 9.06623 9.63248 11.12673 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.041937 B = 0.003393 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.503410 B = 8250.596154 C = 8446.750509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C -0.147 4.147 4 C 0.087 3.913 5 H 0.075 0.925 6 C -0.140 4.140 7 C 0.047 3.953 8 H 0.054 0.946 9 N -0.530 5.530 10 C 0.023 3.977 11 C 0.052 3.948 12 C -0.104 4.104 13 C 0.021 3.979 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.058 3.942 23 O -0.377 6.377 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.022 0.978 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.030 0.970 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.013 0.987 41 H 0.016 0.984 42 H 0.259 0.741 43 H 0.084 0.916 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.598 18.943 -0.315 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.204 4.204 4 C 0.029 3.971 5 H 0.093 0.907 6 C -0.178 4.178 7 C -0.062 4.062 8 H 0.072 0.928 9 N -0.255 5.255 10 C -0.125 4.125 11 C -0.075 4.075 12 C -0.142 4.142 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.018 4.018 23 O -0.295 6.295 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.040 0.960 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.031 0.969 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.102 0.898 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.835 18.734 -0.751 22.172 hybrid contribution 1.126 -0.491 0.525 1.336 sum -10.709 18.243 -0.226 21.155 Atomic orbital electron populations 1.21746 0.94782 1.02329 1.01094 1.21474 0.96614 0.96020 0.98371 1.21824 1.01277 0.95506 1.01826 1.22730 0.93204 0.83671 0.97502 0.90678 1.23202 0.94994 0.96538 1.03082 1.23309 0.91013 0.94597 0.97311 0.92788 1.62128 1.00525 1.03517 1.59311 1.22416 0.95377 0.97108 0.97596 1.22377 1.00706 0.86520 0.97878 1.21655 0.94174 0.98995 0.99398 1.19078 0.96801 0.89165 0.96581 1.21285 1.12098 0.96675 1.25523 0.92631 1.25034 0.97011 0.97116 0.95402 1.69981 1.39993 1.07223 1.36396 0.86543 0.82916 0.78936 0.79655 1.19724 1.21073 1.21009 1.23403 0.84173 0.92760 1.01492 1.88423 1.30486 1.15238 1.95399 0.93039 0.93042 0.91892 0.90654 0.92437 0.92712 0.92328 0.89248 0.90589 0.95958 0.90348 0.91977 0.95202 0.91087 0.92561 0.93379 0.96852 0.96586 0.93098 0.89753 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.07 37.16 0.34 -0.93 16 2 C -0.11 -0.99 2.57 -90.62 -0.23 -1.22 16 3 C -0.15 -1.11 8.96 37.16 0.33 -0.78 16 4 C 0.09 0.92 3.08 -26.00 -0.08 0.84 16 5 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 6 C -0.14 -1.47 3.93 -24.78 -0.10 -1.57 16 7 C 0.05 0.60 2.75 -65.46 -0.18 0.42 16 8 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 9 N -0.53 -7.77 4.66 -232.18 -1.08 -8.86 16 10 C 0.02 0.31 9.18 60.06 0.55 0.86 16 11 C 0.05 0.90 4.84 -3.82 -0.02 0.88 16 12 C -0.10 -2.16 5.08 -26.74 -0.14 -2.30 16 13 C 0.02 0.55 4.97 -27.89 -0.14 0.42 16 14 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 18 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.06 0.77 6.18 38.19 0.24 1.01 16 23 O -0.38 -4.94 10.43 -35.23 -0.37 -5.31 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.64 7.74 -51.92 -0.40 0.24 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.43 7.05 -51.93 -0.37 0.07 16 31 H 0.09 0.98 7.57 -51.93 -0.39 0.59 16 32 H 0.08 0.69 8.13 -51.93 -0.42 0.27 16 33 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 1.11 6.30 -51.93 -0.33 0.78 16 35 H 0.06 0.69 7.27 -51.92 -0.38 0.32 16 36 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 37 H 0.07 1.22 6.70 -51.93 -0.35 0.87 16 38 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 39 H 0.05 0.98 6.47 -51.93 -0.34 0.64 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.08 1.10 7.82 -51.93 -0.41 0.69 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 341.35 15.07 5.14 5.14 Total: -1.00 -30.05 341.35 -8.84 -38.89 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -8.41 Total: -4.26 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 0.16 Total: -15.98 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: -0.35 Total: -35.28 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.37 Total: -5.31 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.05 -8.84 -38.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691656662.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.135 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds