Wall clock time and date at job start Mon Mar 30 2020 06:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46841 * 2 1 4 4 C 1.53002 * 109.47078 * 119.99660 * 2 1 3 5 5 H 1.09002 * 109.82434 * 300.70433 * 4 2 1 6 6 C 1.54386 * 109.90472 * 179.76829 * 4 2 1 7 7 C 1.55306 * 102.25271 * 219.08621 * 6 4 2 8 8 H 1.09003 * 111.16317 * 276.20204 * 7 6 4 9 9 N 1.46897 * 111.12454 * 152.05133 * 7 6 4 10 10 C 1.46900 * 110.99902 * 63.03969 * 9 7 6 11 11 C 1.46904 * 111.00045 * 186.99027 * 9 7 6 12 12 C 1.52996 * 109.47268 * 170.00225 * 11 9 7 13 13 C 1.52991 * 109.47387 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47421 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00134 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00226 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99648 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00145 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47282 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47036 * 120.00455 * 18 16 14 21 21 H 1.48500 * 109.47413 * 240.00212 * 18 16 14 22 22 C 1.54950 * 100.94218 * 34.13402 * 7 6 4 23 23 O 1.43241 * 109.83035 * 61.58906 * 4 2 1 24 24 H 1.08991 * 109.47216 * 299.99960 * 1 2 3 25 25 H 1.08998 * 109.47043 * 60.00518 * 1 2 3 26 26 H 1.09009 * 109.46711 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47676 * 239.99776 * 2 1 3 28 28 H 1.08998 * 109.46879 * 299.99583 * 3 2 1 29 29 H 1.08991 * 109.47183 * 60.00020 * 3 2 1 30 30 H 1.09006 * 109.46818 * 180.02562 * 3 2 1 31 31 H 1.09000 * 110.84933 * 337.27932 * 6 4 2 32 32 H 1.09001 * 110.84623 * 100.89979 * 6 4 2 33 33 H 1.08995 * 109.47211 * 59.99938 * 10 9 7 34 34 H 1.09002 * 109.47265 * 180.02562 * 10 9 7 35 35 H 1.09009 * 109.46694 * 299.99537 * 10 9 7 36 36 H 1.09001 * 109.46838 * 290.00323 * 11 9 7 37 37 H 1.08999 * 109.46963 * 49.99836 * 11 9 7 38 38 H 1.09010 * 109.46927 * 300.00317 * 12 11 9 39 39 H 1.08999 * 109.47445 * 59.99907 * 12 11 9 40 40 H 1.08997 * 109.47415 * 300.00204 * 13 12 11 41 41 H 1.09009 * 109.47405 * 59.99903 * 13 12 11 42 42 H 0.97004 * 119.99684 * 179.97438 * 17 16 14 43 43 H 1.08992 * 110.31012 * 204.63970 * 22 7 6 44 44 H 1.09000 * 110.39363 * 82.50862 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6696 -0.2191 2.1431 6 6 3.5838 -0.7321 1.2565 7 6 3.9008 -2.1513 1.8018 8 1 3.8718 -2.1699 2.8913 9 7 5.1950 -2.6338 1.3016 10 6 6.2933 -1.7800 1.7736 11 6 5.4170 -4.0353 1.6817 12 6 6.6423 -4.5763 0.9423 13 6 6.8732 -6.0361 1.3376 14 6 8.0797 -6.5692 0.6088 15 1 8.6274 -5.9306 -0.0683 16 6 8.4851 -7.8720 0.8073 17 7 7.8185 -8.6497 1.6323 18 14 9.9810 -8.5326 -0.0955 19 1 10.5499 -7.4657 -0.9577 20 1 11.0021 -8.9683 0.8909 21 1 9.5808 -9.6888 -0.9370 22 6 2.7297 -2.9668 1.1981 23 8 1.5975 -2.0835 1.2386 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 3.9773 -0.6073 0.2477 32 1 3.9740 0.0360 1.9242 33 1 6.3155 -1.7860 2.8634 34 1 7.2398 -2.1593 1.3884 35 1 6.1394 -0.7608 1.4189 36 1 5.5846 -4.0979 2.7569 37 1 4.5413 -4.6271 1.4154 38 1 6.4748 -4.5136 -0.1331 39 1 7.5181 -3.9846 1.2086 40 1 7.0405 -6.0993 2.4128 41 1 5.9974 -6.6278 1.0709 42 1 8.1035 -9.5664 1.7717 43 1 2.5379 -3.8554 1.7993 44 1 2.9534 -3.2479 0.1690 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691656662.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:12 Heat of formation + Delta-G solvation = -88.041345 kcal Electronic energy + Delta-G solvation = -19435.869564 eV Core-core repulsion = 16579.407360 eV Total energy + Delta-G solvation = -2856.462204 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.02298 -38.39392 -35.96250 -35.60271 -33.55511 -31.51599 -29.57931 -28.60335 -27.86730 -26.32138 -24.39840 -23.60718 -21.71642 -21.46519 -20.66258 -18.47630 -17.94935 -17.50347 -16.54664 -16.17614 -15.91386 -15.60081 -15.32805 -15.03190 -14.77076 -14.30109 -14.21363 -13.76846 -13.63338 -13.46427 -13.17177 -13.06734 -12.96541 -12.72380 -12.54546 -12.51094 -12.29014 -12.14941 -11.93499 -11.76650 -11.67486 -11.47676 -11.39542 -11.30893 -11.04736 -10.55631 -10.41742 -9.36059 -8.20464 -6.31352 1.39940 1.40308 1.53885 2.40520 2.63368 3.07768 3.12829 3.42765 3.74742 3.91228 4.06830 4.10736 4.14704 4.20903 4.27890 4.40974 4.50331 4.55829 4.65359 4.69627 4.73410 4.74779 4.84217 4.87084 4.90421 4.95599 5.00570 5.04008 5.04516 5.08808 5.20739 5.26860 5.27473 5.46313 5.48498 5.52498 5.73501 5.85799 5.99920 6.02440 6.16853 6.26952 6.85797 7.37995 8.91716 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.041937 B = 0.003393 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.503410 B = 8250.596154 C = 8446.750509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.143 4.143 4 C 0.082 3.918 5 H 0.087 0.913 6 C -0.129 4.129 7 C 0.047 3.953 8 H 0.056 0.944 9 N -0.534 5.534 10 C 0.022 3.978 11 C 0.064 3.936 12 C -0.088 4.088 13 C 0.025 3.975 14 C -0.541 4.541 15 H 0.059 0.941 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.262 1.262 20 H -0.278 1.278 21 H -0.278 1.278 22 C 0.059 3.941 23 O -0.392 6.392 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.026 0.974 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.025 0.975 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.053 0.947 40 H -0.010 1.010 41 H -0.009 1.009 42 H 0.263 0.737 43 H 0.079 0.921 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.093 20.844 -0.772 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.200 4.200 4 C 0.025 3.975 5 H 0.105 0.895 6 C -0.167 4.167 7 C -0.062 4.062 8 H 0.074 0.926 9 N -0.259 5.259 10 C -0.126 4.126 11 C -0.064 4.064 12 C -0.126 4.126 13 C -0.012 4.012 14 C -0.579 4.579 15 H 0.078 0.922 16 C -0.200 4.200 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.185 1.185 20 H -0.203 1.203 21 H -0.204 1.204 22 C -0.018 4.018 23 O -0.311 6.311 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.008 0.992 41 H 0.009 0.991 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.336 20.661 -1.212 23.597 hybrid contribution 0.910 -1.065 0.685 1.559 sum -10.425 19.596 -0.527 22.203 Atomic orbital electron populations 1.21730 0.94602 1.01433 1.02039 1.21462 0.96785 0.97004 0.97110 1.21794 1.01456 0.94071 1.02672 1.22938 0.93360 0.82592 0.98656 0.89539 1.23166 0.94867 0.95371 1.03274 1.23336 0.89554 0.95931 0.97390 0.92590 1.62053 1.01952 1.02166 1.59701 1.22475 0.94187 0.97974 0.97918 1.22085 0.98841 0.88501 0.96965 1.21390 0.96110 0.95771 0.99368 1.18974 0.95156 0.92243 0.94854 1.21717 1.12990 0.97305 1.25884 0.92241 1.25997 1.00321 0.97445 0.96190 1.70109 1.41842 1.07711 1.37796 0.85389 0.78779 0.78373 0.78453 1.18545 1.20322 1.20374 1.23320 0.84719 0.93037 1.00728 1.88414 1.30661 1.16510 1.95485 0.92237 0.91977 0.93689 0.92017 0.91744 0.91760 0.92000 0.89471 0.88396 0.95513 0.91533 0.89374 0.95635 0.91438 0.92972 0.92849 0.99185 0.99054 0.92781 0.90231 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.07 71.98 0.65 -1.67 16 2 C -0.10 -1.78 2.57 -10.79 -0.03 -1.81 16 3 C -0.14 -1.77 8.96 71.98 0.64 -1.13 16 4 C 0.08 1.59 3.08 31.07 0.10 1.68 16 5 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 6 C -0.13 -2.40 3.93 31.86 0.13 -2.28 16 7 C 0.05 1.13 2.75 46.37 0.13 1.26 16 8 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 9 N -0.53 -15.08 4.66 -888.47 -4.14 -19.23 16 10 C 0.02 0.54 9.18 127.69 1.17 1.71 16 11 C 0.06 2.21 4.84 86.30 0.42 2.63 16 12 C -0.09 -3.70 5.08 30.59 0.16 -3.55 16 13 C 0.03 1.36 4.97 29.85 0.15 1.51 16 14 C -0.54 -31.29 9.11 25.60 0.23 -31.06 16 15 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 16 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 17 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 18 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 19 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 C 0.06 1.55 6.18 72.65 0.45 2.00 16 23 O -0.39 -10.05 10.43 -148.98 -1.55 -11.61 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.04 0.89 7.74 -2.38 -0.02 0.88 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.74 7.05 -2.38 -0.02 0.72 16 31 H 0.09 1.70 7.57 -2.39 -0.02 1.68 16 32 H 0.10 1.42 8.13 -2.39 -0.02 1.40 16 33 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 1.79 6.30 -2.39 -0.02 1.77 16 35 H 0.09 1.70 7.27 -2.38 -0.02 1.68 16 36 H 0.03 0.90 8.12 -2.39 -0.02 0.88 16 37 H 0.07 2.37 6.70 -2.39 -0.02 2.36 16 38 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.05 2.16 6.47 -2.39 -0.02 2.15 16 40 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 41 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 42 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.08 2.12 7.82 -2.39 -0.02 2.10 16 44 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -64.55 341.35 2.19 -62.36 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.92 Total: 9.33 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 4.66 Total: -30.36 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -3.86 Total: -76.47 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -1.55 Total: -11.61 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -64.55 2.19 -62.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691656662.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.678 kcal (2) G-P(sol) polarization free energy of solvation -64.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds