Wall clock time and date at job start Mon Mar 30 2020 07:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46846 * 2 1 4 4 C 1.52997 * 109.47013 * 240.00181 * 2 1 3 5 5 O 1.42896 * 109.46859 * 120.00264 * 2 1 3 6 6 C 1.42903 * 114.00381 * 60.00166 * 5 2 1 7 7 C 1.52991 * 109.47224 * 179.97438 * 6 5 2 8 8 C 1.53004 * 109.47107 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.47125 * 184.85919 * 8 7 6 10 10 C 1.46901 * 110.99927 * 184.29952 * 9 8 7 11 11 C 1.52995 * 109.47336 * 185.66354 * 10 9 8 12 12 C 1.50695 * 115.55145 * 304.98740 * 11 10 9 13 13 H 1.08008 * 119.99747 * 274.71523 * 12 11 10 14 14 C 1.37879 * 120.00453 * 94.43560 * 12 11 10 15 15 N 1.31509 * 120.00172 * 180.29457 * 14 12 11 16 16 Si 1.86800 * 119.99804 * 0.29435 * 14 12 11 17 17 H 1.48497 * 109.47205 * 94.25437 * 16 14 12 18 18 H 1.48496 * 109.47468 * 214.26027 * 16 14 12 19 19 H 1.48505 * 109.47075 * 334.25599 * 16 14 12 20 20 C 1.53008 * 117.49752 * 90.65245 * 11 10 9 21 21 C 1.53000 * 117.50141 * 159.31389 * 11 10 9 22 22 H 1.08997 * 109.47374 * 299.99542 * 1 2 3 23 23 H 1.09006 * 109.47057 * 60.00194 * 1 2 3 24 24 H 1.09001 * 109.47078 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46860 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47263 * 299.99984 * 3 2 1 27 27 H 1.09007 * 109.46627 * 60.00083 * 3 2 1 28 28 H 1.09001 * 109.47533 * 300.00131 * 4 2 1 29 29 H 1.09007 * 109.47360 * 60.00435 * 4 2 1 30 30 H 1.09000 * 109.47195 * 179.97438 * 4 2 1 31 31 H 1.09002 * 109.46743 * 59.99553 * 6 5 2 32 32 H 1.08997 * 109.47278 * 300.00315 * 6 5 2 33 33 H 1.09002 * 109.47229 * 60.00336 * 7 6 5 34 34 H 1.08995 * 109.47440 * 299.99823 * 7 6 5 35 35 H 1.08997 * 109.47272 * 64.85717 * 8 7 6 36 36 H 1.09002 * 109.46883 * 304.85932 * 8 7 6 37 37 H 1.00897 * 110.99617 * 308.24947 * 9 8 7 38 38 H 1.08997 * 109.47366 * 65.65796 * 10 9 8 39 39 H 1.09001 * 109.46829 * 305.66346 * 10 9 8 40 40 H 0.97005 * 120.00308 * 180.02562 * 15 14 12 41 41 H 1.09000 * 117.49507 * 215.00248 * 20 11 10 42 42 H 1.08997 * 117.50070 * 0.02750 * 20 11 10 43 43 H 1.09007 * 117.49514 * 359.97438 * 21 11 10 44 44 H 1.09000 * 117.50152 * 144.97761 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0063 -0.6737 1.1667 6 6 1.5847 -2.0356 1.2644 7 6 2.1505 -2.6541 2.5443 8 6 1.6985 -4.1121 2.6492 9 7 2.1436 -4.6716 3.9325 10 6 1.8161 -6.1006 4.0257 11 6 2.1651 -6.6137 5.4241 12 6 3.5860 -6.3777 5.8671 13 1 4.3602 -7.0800 5.5951 14 6 3.8989 -5.2623 6.6148 15 7 5.1399 -5.0534 6.9965 16 14 2.5599 -4.0479 7.0857 17 1 2.0356 -4.3869 8.4330 18 1 3.1222 -2.6737 7.1046 19 1 1.4571 -4.1176 6.0934 20 6 1.0721 -6.5506 6.4930 21 6 1.4823 -7.8991 5.8958 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.6767 -1.7489 -1.2494 29 1 1.6767 -0.2073 -2.1393 30 1 3.1300 -0.7208 -1.2495 31 1 1.9492 -2.5916 0.4006 32 1 0.4959 -2.0779 1.2906 33 1 1.7863 -2.0982 3.4083 34 1 3.2393 -2.6119 2.5176 35 1 2.1335 -4.6870 1.8317 36 1 0.6113 -4.1606 2.5892 37 1 3.1310 -4.5172 4.0712 38 1 2.3893 -6.6540 3.2819 39 1 0.7509 -6.2418 3.8422 40 1 5.3599 -4.2688 7.5229 41 1 1.3810 -6.3384 7.5165 42 1 0.1043 -6.1439 6.1998 43 1 0.7841 -8.3789 5.2099 44 1 2.0610 -8.5742 6.5263 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695302523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:07 Heat of formation + Delta-G solvation = -32.962751 kcal Electronic energy + Delta-G solvation = -19464.987160 eV Core-core repulsion = 16610.913343 eV Total energy + Delta-G solvation = -2854.073817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.17618 -37.41966 -35.37316 -33.57613 -31.97299 -30.89936 -27.76285 -27.62758 -26.21294 -25.07944 -22.97784 -21.50997 -21.10371 -20.05541 -18.74189 -16.63244 -16.17427 -15.99173 -15.29019 -15.01778 -14.67820 -14.39296 -13.97107 -13.73943 -13.44378 -13.07691 -12.67259 -12.43739 -12.34062 -12.17074 -12.01288 -11.98159 -11.94251 -11.46741 -11.35357 -11.06245 -10.97144 -10.66858 -10.52485 -10.42943 -10.20421 -9.84110 -9.51993 -9.35977 -8.92966 -8.51027 -8.38764 -7.39570 -5.99339 -4.06368 3.49880 3.55276 3.63322 3.91626 4.58941 4.63425 4.68027 4.75180 4.83479 5.09812 5.18265 5.23779 5.28001 5.32597 5.39712 5.41816 5.47994 5.55077 5.59776 5.61171 5.68461 5.76981 5.85237 5.89434 5.95320 6.04424 6.06502 6.16239 6.24902 6.38568 6.41378 6.47891 6.58178 6.59218 6.82176 7.12778 7.20785 7.26534 7.83025 7.91971 8.21755 8.58167 8.99971 9.64631 11.10451 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027421 B = 0.004400 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.861142 B = 6361.940152 C = 6770.712832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.105 3.895 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.376 6.376 6 C 0.062 3.938 7 C -0.120 4.120 8 C 0.063 3.937 9 N -0.677 5.677 10 C 0.103 3.897 11 C 0.009 3.991 12 C -0.497 4.497 13 H 0.072 0.928 14 C 0.081 3.919 15 N -0.903 5.903 16 Si 0.872 3.128 17 H -0.298 1.298 18 H -0.304 1.304 19 H -0.207 1.207 20 C -0.194 4.194 21 C -0.188 4.188 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.021 0.979 36 H 0.063 0.937 37 H 0.356 0.644 38 H 0.022 0.978 39 H 0.046 0.954 40 H 0.263 0.737 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.523 8.915 -15.352 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.066 3.934 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.295 6.295 6 C -0.015 4.015 7 C -0.158 4.158 8 C -0.067 4.067 9 N -0.310 5.310 10 C -0.026 4.026 11 C 0.008 3.992 12 C -0.534 4.534 13 H 0.090 0.910 14 C -0.121 4.121 15 N -0.539 5.539 16 Si 0.700 3.300 17 H -0.226 1.226 18 H -0.232 1.232 19 H -0.129 1.129 20 C -0.231 4.231 21 C -0.226 4.226 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.177 0.823 38 H 0.040 0.960 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.842 9.325 -14.806 20.076 hybrid contribution -0.050 0.110 -0.337 0.358 sum -9.892 9.435 -15.143 20.401 Atomic orbital electron populations 1.22436 0.95929 1.02593 1.02651 1.21461 0.93031 0.93217 0.85696 1.21754 1.02019 0.93440 1.02282 1.22436 1.02292 1.01084 0.97804 1.87989 1.74499 1.24391 1.42669 1.22488 0.98330 0.82410 0.98242 1.21508 1.01692 0.95677 0.96875 1.21789 0.99947 0.93365 0.91596 1.60575 1.24881 1.15981 1.29592 1.21452 0.97250 0.86984 0.96942 1.19371 0.93478 0.95636 0.90713 1.20252 0.90276 1.08926 1.33965 0.91021 1.25017 0.95434 0.97367 0.94328 1.69929 1.18542 1.28330 1.37144 0.87001 0.84998 0.78863 0.79103 1.22612 1.23223 1.12911 1.22868 0.99400 1.01251 0.99563 1.22897 1.04021 0.91374 1.04295 0.91679 0.91738 0.92107 0.91784 0.91360 0.91799 0.92112 0.91731 0.91678 0.93378 0.93238 0.90343 0.91206 0.96039 0.91888 0.82341 0.95998 0.93560 0.92760 0.89981 0.90876 0.91306 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 8.25 37.16 0.31 -1.30 16 2 C 0.11 1.09 1.14 -90.62 -0.10 0.99 16 3 C -0.14 -1.24 8.84 37.16 0.33 -0.91 16 4 C -0.18 -1.61 8.25 37.16 0.31 -1.30 16 5 O -0.38 -5.12 9.99 -35.23 -0.35 -5.47 16 6 C 0.06 0.79 5.14 37.15 0.19 0.98 16 7 C -0.12 -1.82 5.80 -26.73 -0.16 -1.97 16 8 C 0.06 1.00 5.69 -3.82 -0.02 0.98 16 9 N -0.68 -13.54 3.86 -113.78 -0.44 -13.98 16 10 C 0.10 2.09 5.61 -3.83 -0.02 2.07 16 11 C 0.01 0.21 1.37 -155.66 -0.21 0.00 16 12 C -0.50 -13.78 8.73 -34.44 -0.30 -14.09 16 13 H 0.07 2.19 8.06 -52.48 -0.42 1.76 16 14 C 0.08 2.33 5.13 -17.82 -0.09 2.23 16 15 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 16 Si 0.87 22.17 23.18 -169.99 -3.94 18.23 16 17 H -0.30 -7.73 7.08 56.52 0.40 -7.33 16 18 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 19 H -0.21 -4.95 5.17 56.52 0.29 -4.66 16 20 C -0.19 -4.26 7.06 -26.69 -0.19 -4.45 16 21 C -0.19 -3.90 9.96 -26.69 -0.27 -4.16 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.55 6.54 -51.93 -0.34 0.21 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.55 6.54 -51.93 -0.34 0.21 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.56 6.42 -51.93 -0.33 0.23 16 32 H 0.05 0.58 6.42 -51.93 -0.33 0.25 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.02 0.32 8.13 -51.93 -0.42 -0.10 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.36 7.84 7.24 -39.29 -0.28 7.55 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 40 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.08 1.93 6.31 -51.93 -0.33 1.61 16 42 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 LS Contribution 337.35 15.07 5.08 5.08 Total: -1.00 -30.32 337.35 -7.49 -37.81 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -8.39 Total: 6.12 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -0.23 Total: -20.94 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.33 Total: -40.84 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.35 Total: -5.47 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -3.94 Total: 18.23 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.32 -7.49 -37.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695302523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.851 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds