Wall clock time and date at job start Mon Mar 30 2020 07:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46846 * 2 1 4 4 C 1.52997 * 109.47013 * 240.00181 * 2 1 3 5 5 O 1.42896 * 109.46859 * 120.00264 * 2 1 3 6 6 C 1.42903 * 114.00381 * 60.00166 * 5 2 1 7 7 C 1.52991 * 109.47224 * 179.97438 * 6 5 2 8 8 C 1.53004 * 109.47107 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.47125 * 184.85919 * 8 7 6 10 10 C 1.46901 * 110.99927 * 184.29952 * 9 8 7 11 11 C 1.52995 * 109.47336 * 185.66354 * 10 9 8 12 12 C 1.50695 * 115.55145 * 304.98740 * 11 10 9 13 13 H 1.08008 * 119.99747 * 274.71523 * 12 11 10 14 14 C 1.37879 * 120.00453 * 94.43560 * 12 11 10 15 15 N 1.31509 * 120.00172 * 180.29457 * 14 12 11 16 16 Si 1.86800 * 119.99804 * 0.29435 * 14 12 11 17 17 H 1.48497 * 109.47205 * 94.25437 * 16 14 12 18 18 H 1.48496 * 109.47468 * 214.26027 * 16 14 12 19 19 H 1.48505 * 109.47075 * 334.25599 * 16 14 12 20 20 C 1.53008 * 117.49752 * 90.65245 * 11 10 9 21 21 C 1.53000 * 117.50141 * 159.31389 * 11 10 9 22 22 H 1.08997 * 109.47374 * 299.99542 * 1 2 3 23 23 H 1.09006 * 109.47057 * 60.00194 * 1 2 3 24 24 H 1.09001 * 109.47078 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46860 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47263 * 299.99984 * 3 2 1 27 27 H 1.09007 * 109.46627 * 60.00083 * 3 2 1 28 28 H 1.09001 * 109.47533 * 300.00131 * 4 2 1 29 29 H 1.09007 * 109.47360 * 60.00435 * 4 2 1 30 30 H 1.09000 * 109.47195 * 179.97438 * 4 2 1 31 31 H 1.09002 * 109.46743 * 59.99553 * 6 5 2 32 32 H 1.08997 * 109.47278 * 300.00315 * 6 5 2 33 33 H 1.09002 * 109.47229 * 60.00336 * 7 6 5 34 34 H 1.08995 * 109.47440 * 299.99823 * 7 6 5 35 35 H 1.08997 * 109.47272 * 64.85717 * 8 7 6 36 36 H 1.09002 * 109.46883 * 304.85932 * 8 7 6 37 37 H 1.00897 * 110.99617 * 308.24947 * 9 8 7 38 38 H 1.08997 * 109.47366 * 65.65796 * 10 9 8 39 39 H 1.09001 * 109.46829 * 305.66346 * 10 9 8 40 40 H 0.97005 * 120.00308 * 180.02562 * 15 14 12 41 41 H 1.09000 * 117.49507 * 215.00248 * 20 11 10 42 42 H 1.08997 * 117.50070 * 0.02750 * 20 11 10 43 43 H 1.09007 * 117.49514 * 359.97438 * 21 11 10 44 44 H 1.09000 * 117.50152 * 144.97761 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0063 -0.6737 1.1667 6 6 1.5847 -2.0356 1.2644 7 6 2.1505 -2.6541 2.5443 8 6 1.6985 -4.1121 2.6492 9 7 2.1436 -4.6716 3.9325 10 6 1.8161 -6.1006 4.0257 11 6 2.1651 -6.6137 5.4241 12 6 3.5860 -6.3777 5.8671 13 1 4.3602 -7.0800 5.5951 14 6 3.8989 -5.2623 6.6148 15 7 5.1399 -5.0534 6.9965 16 14 2.5599 -4.0479 7.0857 17 1 2.0356 -4.3869 8.4330 18 1 3.1222 -2.6737 7.1046 19 1 1.4571 -4.1176 6.0934 20 6 1.0721 -6.5506 6.4930 21 6 1.4823 -7.8991 5.8958 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.6767 -1.7489 -1.2494 29 1 1.6767 -0.2073 -2.1393 30 1 3.1300 -0.7208 -1.2495 31 1 1.9492 -2.5916 0.4006 32 1 0.4959 -2.0779 1.2906 33 1 1.7863 -2.0982 3.4083 34 1 3.2393 -2.6119 2.5176 35 1 2.1335 -4.6870 1.8317 36 1 0.6113 -4.1606 2.5892 37 1 3.1310 -4.5172 4.0712 38 1 2.3893 -6.6540 3.2819 39 1 0.7509 -6.2418 3.8422 40 1 5.3599 -4.2688 7.5229 41 1 1.3810 -6.3384 7.5165 42 1 0.1043 -6.1439 6.1998 43 1 0.7841 -8.3789 5.2099 44 1 2.0610 -8.5742 6.5263 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695302523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:06 Heat of formation + Delta-G solvation = -52.195594 kcal Electronic energy + Delta-G solvation = -19465.821159 eV Core-core repulsion = 16610.913343 eV Total energy + Delta-G solvation = -2854.907815 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.05540 -39.09898 -36.72878 -34.55601 -34.17159 -32.12724 -28.55571 -28.29863 -27.92130 -26.78569 -24.32882 -23.18171 -22.32500 -20.86232 -20.64102 -18.24579 -17.46540 -17.09405 -16.74263 -16.22653 -16.19374 -15.72100 -15.20671 -15.09136 -14.61752 -14.42830 -14.27914 -13.77234 -13.61588 -13.27845 -13.00738 -12.90864 -12.83018 -12.66502 -12.62729 -12.36628 -12.30607 -12.26522 -11.99512 -11.74026 -11.67202 -11.34218 -11.31805 -10.88202 -10.56173 -10.41934 -10.20825 -8.96218 -8.23590 -6.32376 1.44949 1.54898 1.86580 2.54590 2.62979 3.13908 3.21281 3.67406 3.89165 3.90980 4.02244 4.11062 4.18414 4.29215 4.30981 4.43390 4.48509 4.53292 4.63403 4.65525 4.70007 4.75649 4.80974 4.82344 4.85434 4.90436 4.92810 4.93346 4.97299 5.13951 5.14315 5.19177 5.26870 5.35755 5.37123 5.41371 5.53384 5.80216 6.31849 6.37171 6.43265 6.56109 6.79358 7.41646 8.90048 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027421 B = 0.004400 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.861142 B = 6361.940152 C = 6770.712832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.094 3.906 3 C -0.138 4.138 4 C -0.176 4.176 5 O -0.404 6.404 6 C 0.069 3.931 7 C -0.116 4.116 8 C 0.067 3.933 9 N -0.693 5.693 10 C 0.111 3.889 11 C -0.019 4.019 12 C -0.490 4.490 13 H 0.027 0.973 14 C 0.034 3.966 15 N -0.953 5.953 16 Si 0.931 3.069 17 H -0.304 1.304 18 H -0.319 1.319 19 H -0.177 1.177 20 C -0.191 4.191 21 C -0.170 4.170 22 H 0.056 0.944 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.034 0.966 36 H 0.083 0.917 37 H 0.338 0.662 38 H 0.021 0.979 39 H 0.076 0.924 40 H 0.261 0.739 41 H 0.061 0.939 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.655 9.187 -17.339 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.055 3.945 3 C -0.195 4.195 4 C -0.234 4.234 5 O -0.325 6.325 6 C -0.008 4.008 7 C -0.154 4.154 8 C -0.062 4.062 9 N -0.325 5.325 10 C -0.018 4.018 11 C -0.020 4.020 12 C -0.528 4.528 13 H 0.045 0.955 14 C -0.164 4.164 15 N -0.593 5.593 16 Si 0.759 3.241 17 H -0.232 1.232 18 H -0.248 1.248 19 H -0.098 1.098 20 C -0.228 4.228 21 C -0.207 4.207 22 H 0.075 0.925 23 H 0.103 0.897 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.157 0.843 38 H 0.039 0.961 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.007 9.577 -16.820 23.320 hybrid contribution 0.997 -0.035 0.246 1.027 sum -12.010 9.541 -16.574 22.583 Atomic orbital electron populations 1.22413 0.94749 1.02850 1.03296 1.21761 0.94071 0.93533 0.85114 1.21799 1.01537 0.93037 1.03146 1.22417 1.01713 1.01239 0.97989 1.87953 1.75238 1.24760 1.44509 1.22386 0.98907 0.82375 0.97106 1.21436 1.00669 0.95568 0.97708 1.21835 1.01001 0.93285 0.90077 1.60576 1.23598 1.15999 1.32333 1.21357 0.98887 0.86995 0.94583 1.19384 0.91159 0.98603 0.92850 1.20444 0.92176 1.07331 1.32831 0.95513 1.25726 0.96938 0.99122 0.94564 1.70063 1.20794 1.29281 1.39140 0.86132 0.83332 0.75759 0.78893 1.23246 1.24793 1.09775 1.22883 0.99797 1.02216 0.97923 1.22944 1.03443 0.90507 1.03844 0.92475 0.89680 0.92012 0.92617 0.88904 0.92527 0.92066 0.89650 0.92609 0.92230 0.91836 0.92105 0.92937 0.94812 0.89865 0.84337 0.96132 0.90528 0.92993 0.92083 0.88027 0.87395 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.72 8.25 71.98 0.59 -2.13 16 2 C 0.09 1.77 1.14 -10.79 -0.01 1.75 16 3 C -0.14 -2.28 8.84 71.98 0.64 -1.65 16 4 C -0.18 -2.78 8.25 71.98 0.59 -2.19 16 5 O -0.40 -10.58 9.99 -148.98 -1.49 -12.07 16 6 C 0.07 1.63 5.14 71.98 0.37 2.00 16 7 C -0.12 -3.39 5.80 30.59 0.18 -3.21 16 8 C 0.07 1.95 5.69 86.30 0.49 2.44 16 9 N -0.69 -26.39 3.86 -513.89 -1.99 -28.37 16 10 C 0.11 4.18 5.61 86.30 0.48 4.66 16 11 C -0.02 -0.84 1.37 -52.93 -0.07 -0.91 16 12 C -0.49 -27.73 8.73 25.60 0.22 -27.50 16 13 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 14 C 0.03 2.00 5.13 84.66 0.43 2.43 16 15 N -0.95 -60.69 13.96 21.45 0.30 -60.39 16 16 Si 0.93 46.50 23.18 68.60 1.59 48.09 16 17 H -0.30 -15.35 7.08 99.48 0.70 -14.65 16 18 H -0.32 -16.57 7.11 99.48 0.71 -15.86 16 19 H -0.18 -7.92 5.17 99.48 0.51 -7.40 16 20 C -0.19 -7.82 7.06 30.62 0.22 -7.60 16 21 C -0.17 -6.54 9.96 30.62 0.30 -6.23 16 22 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 24 H 0.06 0.93 6.54 -2.39 -0.02 0.92 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.06 0.95 6.54 -2.39 -0.02 0.93 16 29 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.26 6.42 -2.39 -0.02 1.25 16 32 H 0.06 1.32 6.42 -2.39 -0.02 1.30 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.03 0.92 8.13 -2.39 -0.02 0.90 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.34 14.86 7.24 -89.70 -0.65 14.21 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.08 2.45 8.08 -2.39 -0.02 2.43 16 40 H 0.26 15.89 8.31 -92.70 -0.77 15.12 16 41 H 0.06 2.76 6.31 -2.39 -0.02 2.75 16 42 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 43 H 0.11 3.35 8.14 -2.38 -0.02 3.33 16 44 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -67.18 337.35 2.95 -64.23 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.09 Total: 26.64 kcal Atomic # 6 Polarization: -42.57 SS G_CDS: 4.44 Total: -38.13 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -1.69 Total: -88.76 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -1.49 Total: -12.07 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.59 Total: 48.09 kcal Total: -67.18 2.95 -64.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695302523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.036 kcal (2) G-P(sol) polarization free energy of solvation -67.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds