Wall clock time and date at job start Mon Mar 30 2020 06:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 H 1.08996 * 110.45621 * 52.39493 * 4 3 2 6 6 C 1.54479 * 110.51248 * 289.64280 * 4 3 2 7 7 O 1.44425 * 104.80411 * 217.37452 * 6 4 3 8 8 C 1.44421 * 105.27539 * 40.51347 * 7 6 4 9 9 C 1.54484 * 104.80380 * 319.48709 * 8 7 6 10 10 H 1.08997 * 110.50867 * 142.62235 * 9 8 7 11 11 N 1.46900 * 110.50913 * 265.33657 * 9 8 7 12 12 C 1.46902 * 110.99665 * 269.63849 * 11 9 8 13 13 C 1.52997 * 109.47008 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47407 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47407 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47353 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99907 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00097 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99956 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99629 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47496 * 89.99937 * 20 18 16 22 22 H 1.48506 * 109.46647 * 209.99334 * 20 18 16 23 23 H 1.48496 * 109.47335 * 329.99177 * 20 18 16 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.09005 * 110.37228 * 336.20714 * 6 4 3 32 32 H 1.08999 * 110.37085 * 98.54595 * 6 4 3 33 33 H 1.09002 * 110.37622 * 200.65383 * 8 7 6 34 34 H 1.09006 * 110.37359 * 78.31940 * 8 7 6 35 35 H 1.00902 * 111.00016 * 145.68935 * 11 9 8 36 36 H 1.09000 * 109.47246 * 299.99828 * 12 11 9 37 37 H 1.09003 * 109.47245 * 60.00335 * 12 11 9 38 38 H 1.09005 * 109.47219 * 300.00331 * 13 12 11 39 39 H 1.08997 * 109.47309 * 60.00046 * 13 12 11 40 40 H 1.08999 * 109.46971 * 300.00681 * 14 13 12 41 41 H 1.09003 * 109.47004 * 60.00171 * 14 13 12 42 42 H 1.09005 * 109.47219 * 300.00381 * 15 14 13 43 43 H 1.09003 * 109.46899 * 60.00106 * 15 14 13 44 44 H 0.96997 * 119.99777 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9513 0.8191 -0.8082 6 6 4.1108 0.9562 1.3636 7 8 5.2792 1.7691 1.6082 8 6 4.9153 3.0982 1.1763 9 6 4.1115 2.8840 -0.1255 10 1 3.2892 3.5967 -0.1882 11 7 4.9887 3.0036 -1.2977 12 6 5.0338 4.3898 -1.7821 13 6 5.9547 4.4743 -3.0010 14 6 6.0012 5.9178 -3.5060 15 6 6.9226 6.0024 -4.7245 16 6 6.9689 7.4243 -5.2216 17 1 6.3979 8.1909 -4.7189 18 6 7.7394 7.7464 -6.3187 19 7 8.4343 6.8128 -6.9311 20 14 7.7973 9.5091 -6.9342 21 1 8.9020 10.2341 -6.2566 22 1 8.0287 9.5137 -8.4011 23 1 6.5072 10.1807 -6.6345 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 3.3677 1.1150 2.1451 32 1 4.3859 -0.0970 1.3088 33 1 5.8085 3.6906 0.9775 34 1 4.2956 3.5856 1.9291 35 1 4.7002 2.3735 -2.0310 36 1 4.0302 4.7095 -2.0626 37 1 5.4146 5.0382 -0.9930 38 1 6.9584 4.1543 -2.7210 39 1 5.5736 3.8259 -3.7899 40 1 4.9974 6.2373 -3.7860 41 1 6.3821 6.5666 -2.7172 42 1 7.9263 5.6831 -4.4440 43 1 6.5421 5.3536 -5.5135 44 1 8.9766 7.0395 -7.7027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699792175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:03 Heat of formation + Delta-G solvation = -86.018379 kcal Electronic energy + Delta-G solvation = -18753.429510 eV Core-core repulsion = 15897.055028 eV Total energy + Delta-G solvation = -2856.374481 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.99309 -36.31105 -35.66897 -34.04088 -32.29635 -31.02110 -29.03733 -27.31502 -26.10050 -24.40417 -22.96572 -21.62908 -20.93183 -20.53288 -19.86783 -16.76042 -16.22215 -16.18885 -15.91340 -15.19894 -14.98515 -14.62254 -14.36021 -14.07804 -13.79183 -13.18190 -13.04654 -12.87060 -12.36829 -12.34332 -11.88110 -11.78954 -11.63342 -11.43323 -11.24556 -11.08445 -10.98212 -10.86381 -10.80856 -10.54994 -10.45200 -10.41083 -9.89084 -9.61624 -9.24177 -8.98719 -8.39579 -8.31107 -5.96399 -3.98632 3.33674 3.39615 3.42970 3.80288 4.05050 4.19448 4.48082 4.50080 4.64845 4.74295 4.78398 4.95047 5.04914 5.19345 5.24612 5.36183 5.38876 5.40572 5.43527 5.43866 5.45893 5.56373 5.60672 5.69618 5.77448 5.81108 5.89409 5.90983 5.97576 6.15291 6.25595 6.52147 6.64568 6.83751 6.97736 7.06275 7.24166 7.37675 7.72629 7.88617 8.04825 8.47523 9.08945 9.65132 11.15011 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.033564 B = 0.002899 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.033485 B = 9654.895344 C =10080.286459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.125 4.125 5 H 0.091 0.909 6 C 0.053 3.947 7 O -0.369 6.369 8 C 0.055 3.945 9 C 0.056 3.944 10 H 0.059 0.941 11 N -0.679 5.679 12 C 0.058 3.942 13 C -0.116 4.116 14 C -0.108 4.108 15 C 0.021 3.979 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.342 0.658 36 H 0.026 0.974 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.014 0.986 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.425 -13.220 16.362 25.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.145 4.145 5 H 0.109 0.891 6 C -0.024 4.024 7 O -0.287 6.287 8 C -0.023 4.023 9 C -0.055 4.055 10 H 0.077 0.923 11 N -0.311 5.311 12 C -0.070 4.070 13 C -0.153 4.153 14 C -0.147 4.147 15 C -0.016 4.016 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.161 0.839 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.531 -13.251 16.677 25.235 hybrid contribution -0.995 1.148 -0.999 1.819 sum -14.526 -12.103 15.677 24.562 Atomic orbital electron populations 1.21778 0.95792 1.01655 1.01857 1.21551 0.95931 0.96575 1.02242 1.21689 0.93557 0.97290 1.02430 1.22822 0.95736 0.96326 0.99572 0.89118 1.23423 0.88109 0.96253 0.94646 1.89153 1.34905 1.19790 1.84882 1.23487 1.00178 0.85479 0.93112 1.22979 0.93704 0.95804 0.92967 0.92267 1.60580 1.53792 1.07925 1.08758 1.22155 0.98375 0.88491 0.98026 1.21636 0.99455 0.99097 0.95158 1.21587 1.00339 0.93109 0.99631 1.19091 0.94258 0.96683 0.91584 1.21291 1.27336 0.94555 1.12661 0.92790 1.25038 0.95629 0.97152 0.96743 1.69969 1.29817 1.32551 1.21227 0.86609 0.78358 0.85194 0.77921 1.20662 1.21242 1.19935 0.92691 0.92786 0.92726 0.91897 0.91792 0.91600 0.91675 0.92494 0.89347 0.88313 0.92599 0.83917 0.95532 0.91294 0.91561 0.92759 0.93723 0.93444 0.96588 0.96751 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.13 -0.79 5.81 -26.74 -0.16 -0.95 16 3 C -0.11 -0.80 4.43 -26.74 -0.12 -0.92 16 4 C -0.13 -1.09 2.79 -89.05 -0.25 -1.34 16 5 H 0.09 0.83 7.55 -51.93 -0.39 0.44 16 6 C 0.05 0.48 6.51 37.93 0.25 0.73 16 7 O -0.37 -4.64 11.65 -35.23 -0.41 -5.05 16 8 C 0.05 0.62 7.35 37.94 0.28 0.89 16 9 C 0.06 0.59 3.10 -66.14 -0.20 0.38 16 10 H 0.06 0.60 7.42 -51.93 -0.39 0.22 16 11 N -0.68 -8.52 6.31 -105.07 -0.66 -9.18 16 12 C 0.06 0.82 5.55 -3.82 -0.02 0.80 16 13 C -0.12 -1.99 5.47 -26.73 -0.15 -2.14 16 14 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 15 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 16 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 20 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.37 7.63 -51.93 -0.40 -0.03 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.45 7.96 -51.93 -0.41 0.03 16 31 H 0.06 0.45 7.74 -51.93 -0.40 0.04 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 1.21 8.06 -51.93 -0.42 0.79 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.34 4.03 8.07 -39.29 -0.32 3.71 16 36 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 350.27 15.07 5.28 5.28 Total: -1.00 -31.10 350.27 -9.37 -40.47 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -8.60 Total: -2.78 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -0.69 Total: -18.93 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.07 Total: -35.95 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.41 Total: -5.05 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.10 -9.37 -40.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699792175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.552 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds