Wall clock time and date at job start Mon Mar 30 2020 06:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 H 1.08996 * 110.45621 * 52.39493 * 4 3 2 6 6 C 1.54479 * 110.51248 * 289.64280 * 4 3 2 7 7 O 1.44425 * 104.80411 * 217.37452 * 6 4 3 8 8 C 1.44421 * 105.27539 * 40.51347 * 7 6 4 9 9 C 1.54484 * 104.80380 * 319.48709 * 8 7 6 10 10 H 1.08997 * 110.50867 * 142.62235 * 9 8 7 11 11 N 1.46900 * 110.50913 * 265.33657 * 9 8 7 12 12 C 1.46902 * 110.99665 * 269.63849 * 11 9 8 13 13 C 1.52997 * 109.47008 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47407 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47407 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47353 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99907 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00097 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99956 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99629 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47496 * 89.99937 * 20 18 16 22 22 H 1.48506 * 109.46647 * 209.99334 * 20 18 16 23 23 H 1.48496 * 109.47335 * 329.99177 * 20 18 16 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.09005 * 110.37228 * 336.20714 * 6 4 3 32 32 H 1.08999 * 110.37085 * 98.54595 * 6 4 3 33 33 H 1.09002 * 110.37622 * 200.65383 * 8 7 6 34 34 H 1.09006 * 110.37359 * 78.31940 * 8 7 6 35 35 H 1.00902 * 111.00016 * 145.68935 * 11 9 8 36 36 H 1.09000 * 109.47246 * 299.99828 * 12 11 9 37 37 H 1.09003 * 109.47245 * 60.00335 * 12 11 9 38 38 H 1.09005 * 109.47219 * 300.00331 * 13 12 11 39 39 H 1.08997 * 109.47309 * 60.00046 * 13 12 11 40 40 H 1.08999 * 109.46971 * 300.00681 * 14 13 12 41 41 H 1.09003 * 109.47004 * 60.00171 * 14 13 12 42 42 H 1.09005 * 109.47219 * 300.00381 * 15 14 13 43 43 H 1.09003 * 109.46899 * 60.00106 * 15 14 13 44 44 H 0.96997 * 119.99777 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9513 0.8191 -0.8082 6 6 4.1108 0.9562 1.3636 7 8 5.2792 1.7691 1.6082 8 6 4.9153 3.0982 1.1763 9 6 4.1115 2.8840 -0.1255 10 1 3.2892 3.5967 -0.1882 11 7 4.9887 3.0036 -1.2977 12 6 5.0338 4.3898 -1.7821 13 6 5.9547 4.4743 -3.0010 14 6 6.0012 5.9178 -3.5060 15 6 6.9226 6.0024 -4.7245 16 6 6.9689 7.4243 -5.2216 17 1 6.3979 8.1909 -4.7189 18 6 7.7394 7.7464 -6.3187 19 7 8.4343 6.8128 -6.9311 20 14 7.7973 9.5091 -6.9342 21 1 8.9020 10.2341 -6.2566 22 1 8.0287 9.5137 -8.4011 23 1 6.5072 10.1807 -6.6345 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 3.3677 1.1150 2.1451 32 1 4.3859 -0.0970 1.3088 33 1 5.8085 3.6906 0.9775 34 1 4.2956 3.5856 1.9291 35 1 4.7002 2.3735 -2.0310 36 1 4.0302 4.7095 -2.0626 37 1 5.4146 5.0382 -0.9930 38 1 6.9584 4.1543 -2.7210 39 1 5.5736 3.8259 -3.7899 40 1 4.9974 6.2373 -3.7860 41 1 6.3821 6.5666 -2.7172 42 1 7.9263 5.6831 -4.4440 43 1 6.5421 5.3536 -5.5135 44 1 8.9766 7.0395 -7.7027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699792175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:02 Heat of formation + Delta-G solvation = -105.224831 kcal Electronic energy + Delta-G solvation = -18754.262364 eV Core-core repulsion = 15897.055028 eV Total energy + Delta-G solvation = -2857.207336 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.79703 -37.56588 -36.32818 -35.70794 -34.04222 -31.97656 -30.30545 -28.64919 -26.79817 -26.05134 -23.90489 -22.84126 -21.98119 -21.57637 -21.10120 -18.44674 -17.59787 -17.00144 -16.68851 -16.54657 -16.35855 -15.76105 -15.57545 -15.04214 -14.64275 -14.43915 -14.10805 -13.89873 -13.62880 -13.48842 -13.34119 -12.95444 -12.85205 -12.58217 -12.37284 -12.26416 -12.14492 -12.08744 -12.02469 -11.69932 -11.52377 -11.39081 -11.38258 -11.30125 -10.95218 -10.70822 -10.55992 -9.36648 -8.20362 -6.32024 1.39190 1.41094 1.52146 2.40550 3.01277 3.12355 3.14435 3.44879 3.83932 3.96582 4.10692 4.13413 4.18960 4.24698 4.31877 4.39085 4.45476 4.53871 4.59655 4.68076 4.70841 4.81981 4.84715 4.84972 4.90458 4.92826 4.95180 5.01704 5.16129 5.23152 5.26726 5.28458 5.35099 5.38296 5.47297 5.54613 5.77277 5.82604 5.86715 6.14365 6.25223 6.41861 6.85775 7.37397 8.91673 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.033564 B = 0.002899 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.033485 B = 9654.895344 C =10080.286459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.105 4.105 4 C -0.117 4.117 5 H 0.085 0.915 6 C 0.050 3.950 7 O -0.398 6.398 8 C 0.052 3.948 9 C 0.056 3.944 10 H 0.069 0.931 11 N -0.688 5.688 12 C 0.071 3.929 13 C -0.106 4.106 14 C -0.096 4.096 15 C 0.022 3.978 16 C -0.545 4.545 17 H 0.060 0.940 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.262 1.262 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.346 0.654 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.050 0.950 42 H -0.013 1.013 43 H -0.011 1.011 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.992 -12.683 17.252 26.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.143 4.143 4 C -0.137 4.137 5 H 0.104 0.896 6 C -0.027 4.027 7 O -0.317 6.317 8 C -0.025 4.025 9 C -0.054 4.054 10 H 0.087 0.913 11 N -0.321 5.321 12 C -0.058 4.058 13 C -0.144 4.144 14 C -0.134 4.134 15 C -0.015 4.015 16 C -0.583 4.583 17 H 0.079 0.921 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.791 3.209 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.186 1.186 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.165 0.835 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.006 0.994 43 H 0.008 0.992 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.113 -12.724 17.582 26.447 hybrid contribution -0.484 0.919 -1.268 1.639 sum -15.598 -11.805 16.314 25.471 Atomic orbital electron populations 1.21777 0.95447 1.01984 1.01880 1.21539 0.96199 0.96019 1.02416 1.21638 0.92155 0.97895 1.02610 1.22758 0.96764 0.94910 0.99224 0.89629 1.23604 0.87556 0.96283 0.95236 1.89119 1.36758 1.20633 1.85174 1.23545 0.99870 0.85134 0.93999 1.23027 0.93482 0.97259 0.91644 0.91288 1.60512 1.55039 1.07021 1.09513 1.21910 0.97837 0.89635 0.96381 1.21460 0.99727 0.96514 0.96668 1.21390 0.99101 0.95693 0.97237 1.19025 0.93914 0.95304 0.93227 1.21750 1.27621 0.95720 1.13181 0.92129 1.26040 0.95014 1.02160 0.96915 1.70108 1.30547 1.35126 1.21787 0.85421 0.78986 0.79138 0.77347 1.19734 1.20667 1.18602 0.93029 0.92407 0.92295 0.91294 0.92101 0.91910 0.90975 0.90871 0.88559 0.89973 0.90701 0.83460 0.94507 0.91170 0.92915 0.92812 0.92971 0.93100 0.99417 0.99211 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.82 16 2 C -0.12 -1.32 5.81 30.59 0.18 -1.14 16 3 C -0.11 -1.27 4.43 30.59 0.14 -1.13 16 4 C -0.12 -1.84 2.79 -9.78 -0.03 -1.87 16 5 H 0.09 1.44 7.55 -2.39 -0.02 1.42 16 6 C 0.05 0.82 6.51 72.48 0.47 1.29 16 7 O -0.40 -9.60 11.65 -148.98 -1.74 -11.33 16 8 C 0.05 1.10 7.35 72.49 0.53 1.63 16 9 C 0.06 1.09 3.10 45.93 0.14 1.23 16 10 H 0.07 1.23 7.42 -2.39 -0.02 1.22 16 11 N -0.69 -16.54 6.31 -486.32 -3.07 -19.61 16 12 C 0.07 1.91 5.55 86.30 0.48 2.39 16 13 C -0.11 -3.63 5.47 30.59 0.17 -3.46 16 14 C -0.10 -4.00 5.15 30.59 0.16 -3.85 16 15 C 0.02 1.22 4.97 29.85 0.15 1.37 16 16 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 17 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 18 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 19 N -0.94 -58.36 13.29 21.45 0.28 -58.08 16 20 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 24 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.06 0.53 8.14 -2.38 -0.02 0.52 16 27 H 0.07 0.66 7.63 -2.39 -0.02 0.64 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.79 7.96 -2.39 -0.02 0.77 16 31 H 0.07 0.96 7.74 -2.38 -0.02 0.95 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.99 8.06 -2.39 -0.02 1.97 16 34 H 0.07 1.27 8.14 -2.38 -0.02 1.26 16 35 H 0.35 7.78 8.07 -89.69 -0.72 7.06 16 36 H 0.04 0.92 8.08 -2.39 -0.02 0.90 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 42 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 43 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -66.81 350.27 1.50 -65.31 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.20 Total: 12.47 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 3.79 Total: -35.74 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -2.78 Total: -77.69 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -1.74 Total: -11.33 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -66.81 1.50 -65.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699792175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.916 kcal (2) G-P(sol) polarization free energy of solvation -66.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds