Wall clock time and date at job start Mon Mar 30 2020 06:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47523 * 2 1 4 4 C 1.52999 * 109.47523 * 180.02562 * 3 2 1 5 5 H 1.08993 * 110.56437 * 52.32409 * 4 3 2 6 6 C 1.54795 * 110.55519 * 289.48902 * 4 3 2 7 7 O 1.44426 * 104.80515 * 217.33811 * 6 4 3 8 8 C 1.44425 * 105.27489 * 40.57889 * 7 6 4 9 9 C 1.54474 * 104.80872 * 319.49679 * 8 7 6 10 10 H 1.09003 * 110.51105 * 265.19398 * 9 8 7 11 11 N 1.46893 * 110.51292 * 142.62027 * 9 8 7 12 12 C 1.46896 * 111.00308 * 88.30905 * 11 9 8 13 13 C 1.52996 * 109.47438 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47131 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.47127 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47184 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99819 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00046 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00192 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47309 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47510 * 119.99847 * 20 18 16 23 23 H 1.48506 * 109.47246 * 239.99882 * 20 18 16 24 24 H 1.08997 * 109.47405 * 59.99632 * 1 2 3 25 25 H 1.09001 * 109.46988 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46752 * 299.99709 * 1 2 3 27 27 H 1.09005 * 109.47090 * 239.99976 * 2 1 3 28 28 H 1.09004 * 109.47056 * 120.00332 * 2 1 3 29 29 H 1.09011 * 109.46560 * 60.00020 * 3 2 1 30 30 H 1.08994 * 109.47580 * 300.00600 * 3 2 1 31 31 H 1.08999 * 110.31073 * 98.53364 * 6 4 3 32 32 H 1.09006 * 110.53160 * 336.24041 * 6 4 3 33 33 H 1.09001 * 110.37243 * 200.66132 * 8 7 6 34 34 H 1.09002 * 110.46293 * 78.37339 * 8 7 6 35 35 H 1.00897 * 111.00315 * 324.34842 * 11 9 8 36 36 H 1.09000 * 109.47585 * 59.99341 * 12 11 9 37 37 H 1.09001 * 109.46551 * 299.99826 * 12 11 9 38 38 H 1.08996 * 109.47452 * 59.99844 * 13 12 11 39 39 H 1.09001 * 109.46997 * 299.99418 * 13 12 11 40 40 H 1.09001 * 109.47502 * 60.00153 * 14 13 12 41 41 H 1.09001 * 109.47289 * 299.99950 * 14 13 12 42 42 H 1.09001 * 109.47002 * 299.99574 * 15 14 13 43 43 H 1.08993 * 109.46955 * 60.00011 * 15 14 13 44 44 H 0.96996 * 120.00505 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9526 0.8188 -0.8086 6 6 4.1141 0.9586 1.3654 7 8 5.2833 1.7717 1.6059 8 6 4.9185 3.1003 1.1726 9 6 4.1114 2.8841 -0.1267 10 1 4.7596 2.9738 -0.9984 11 7 3.0032 3.8446 -0.2100 12 6 3.4336 5.0902 -0.8590 13 6 2.2553 6.0637 -0.9268 14 6 2.7039 7.3611 -1.6021 15 6 1.5253 8.3345 -1.6705 16 6 1.9670 9.6122 -2.3363 17 1 2.9865 9.7195 -2.6762 18 6 1.0699 10.6446 -2.5104 19 7 -0.1713 10.5142 -2.0960 20 14 1.6176 12.2287 -3.3350 21 1 3.0519 12.1237 -3.7056 22 1 0.8056 12.4571 -4.5572 23 1 1.4311 13.3651 -2.3973 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9562 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 4.3890 -0.0948 1.3116 32 1 3.3739 1.1174 2.1497 33 1 5.8113 3.6920 0.9706 34 1 4.3014 3.5906 1.9254 35 1 2.6142 4.0281 0.7027 36 1 3.7838 4.8721 -1.8679 37 1 4.2427 5.5391 -0.2828 38 1 1.9057 6.2818 0.0823 39 1 1.4460 5.6149 -1.5027 40 1 3.0538 7.1434 -2.6112 41 1 3.5131 7.8098 -1.0259 42 1 0.7164 7.8856 -2.2470 43 1 1.1751 8.5523 -0.6616 44 1 -0.8024 11.2406 -2.2182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699792177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:05 Heat of formation + Delta-G solvation = -82.919246 kcal Electronic energy + Delta-G solvation = -18962.815606 eV Core-core repulsion = 16106.575513 eV Total energy + Delta-G solvation = -2856.240093 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.09149 -36.40719 -35.44901 -34.05216 -32.30296 -30.89526 -29.07932 -27.10197 -26.03089 -24.28494 -23.12405 -21.76116 -21.26983 -20.19765 -19.60155 -16.81265 -16.29770 -16.10540 -15.86891 -15.37369 -14.73855 -14.53633 -14.29865 -14.02483 -13.69643 -13.37806 -12.87556 -12.67524 -12.46184 -12.25418 -12.09525 -11.75555 -11.64982 -11.32035 -11.17612 -11.01490 -10.79187 -10.68856 -10.57989 -10.51449 -10.47427 -10.40829 -10.02747 -9.64048 -9.26145 -8.99432 -8.42345 -8.32911 -5.97978 -4.00148 3.31704 3.39079 3.43306 3.66270 4.20222 4.39884 4.48029 4.51211 4.64484 4.86442 4.96008 4.98514 5.07903 5.12188 5.34633 5.37851 5.46135 5.47757 5.50064 5.53833 5.56691 5.66244 5.73354 5.82289 5.85570 5.88038 6.04865 6.13930 6.20070 6.21695 6.37999 6.49314 6.53511 6.81068 6.94634 7.00717 7.21158 7.31571 7.71126 7.86569 8.03096 8.45995 9.07616 9.63842 11.13404 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.028752 B = 0.003203 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.594915 B = 8738.595341 C = 9497.804278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.094 4.094 4 C -0.113 4.113 5 H 0.082 0.918 6 C 0.046 3.954 7 O -0.377 6.377 8 C 0.017 3.983 9 C 0.058 3.942 10 H 0.091 0.909 11 N -0.674 5.674 12 C 0.057 3.943 13 C -0.115 4.115 14 C -0.109 4.109 15 C 0.021 3.979 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.341 0.659 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.044 0.956 42 H 0.016 0.984 43 H 0.014 0.986 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.131 -21.024 6.204 22.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.132 4.132 4 C -0.132 4.132 5 H 0.101 0.899 6 C -0.031 4.031 7 O -0.295 6.295 8 C -0.062 4.062 9 C -0.054 4.054 10 H 0.109 0.891 11 N -0.305 5.305 12 C -0.071 4.071 13 C -0.153 4.153 14 C -0.147 4.147 15 C -0.016 4.016 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.160 0.840 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.920 -21.264 5.722 22.803 hybrid contribution 0.581 1.446 0.207 1.572 sum 6.501 -19.819 5.930 21.684 Atomic orbital electron populations 1.21756 0.95868 1.01206 1.02120 1.21621 0.96006 0.97546 1.01405 1.21391 0.92539 0.95509 1.03782 1.22632 0.97405 0.95520 0.97687 0.89915 1.23649 0.87753 0.95887 0.95834 1.89116 1.35342 1.19690 1.85314 1.24257 1.00455 0.85786 0.95705 1.22980 0.91777 0.92939 0.97660 0.89114 1.60643 1.30513 1.12527 1.26820 1.22148 0.97458 0.88765 0.98771 1.21631 0.97044 0.95499 1.01131 1.21590 1.00359 0.94133 0.98631 1.19094 0.92606 0.92935 0.96993 1.21328 0.96602 0.99588 1.38273 0.92735 1.25035 0.94968 0.98723 0.95838 1.69974 1.03650 1.32611 1.47317 0.86559 0.78756 0.83593 0.79227 1.19768 1.21013 1.21046 0.92499 0.93185 0.92776 0.92320 0.92635 0.92086 0.89775 0.89392 0.92208 0.89197 0.92250 0.83992 0.91143 0.95487 0.92778 0.91616 0.93447 0.93691 0.96609 0.96751 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.00 5.81 -26.74 -0.16 -1.15 16 3 C -0.09 -0.84 3.64 -26.74 -0.10 -0.94 16 4 C -0.11 -1.02 3.13 -88.88 -0.28 -1.29 16 5 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 6 C 0.05 0.41 6.53 38.10 0.25 0.66 16 7 O -0.38 -4.34 11.65 -35.23 -0.41 -4.75 16 8 C 0.02 0.17 7.29 37.93 0.28 0.45 16 9 C 0.06 0.58 3.40 -66.15 -0.23 0.36 16 10 H 0.09 0.95 7.85 -51.93 -0.41 0.54 16 11 N -0.67 -7.56 4.51 -105.08 -0.47 -8.04 16 12 C 0.06 0.75 5.54 -3.83 -0.02 0.73 16 13 C -0.12 -1.89 5.47 -26.73 -0.15 -2.04 16 14 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 16 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 17 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 20 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.40 7.64 -51.93 -0.40 0.00 16 29 H 0.06 0.56 7.64 -51.92 -0.40 0.16 16 30 H 0.08 0.89 7.63 -51.93 -0.40 0.50 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.51 7.76 -51.93 -0.40 0.11 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.59 7.58 -51.93 -0.39 0.20 16 35 H 0.34 3.67 7.82 -39.29 -0.31 3.36 16 36 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 37 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 347.77 15.07 5.24 5.24 Total: -1.00 -30.17 347.77 -9.23 -39.40 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -8.58 Total: -2.42 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -0.72 Total: -19.75 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.26 Total: -34.55 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.41 Total: -4.75 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.17 -9.23 -39.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699792177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.520 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds