Wall clock time and date at job start Mon Mar 30 2020 06:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47523 * 2 1 4 4 C 1.52999 * 109.47523 * 180.02562 * 3 2 1 5 5 H 1.08993 * 110.56437 * 52.32409 * 4 3 2 6 6 C 1.54795 * 110.55519 * 289.48902 * 4 3 2 7 7 O 1.44426 * 104.80515 * 217.33811 * 6 4 3 8 8 C 1.44425 * 105.27489 * 40.57889 * 7 6 4 9 9 C 1.54474 * 104.80872 * 319.49679 * 8 7 6 10 10 H 1.09003 * 110.51105 * 265.19398 * 9 8 7 11 11 N 1.46893 * 110.51292 * 142.62027 * 9 8 7 12 12 C 1.46896 * 111.00308 * 88.30905 * 11 9 8 13 13 C 1.52996 * 109.47438 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47131 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.47127 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47184 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99819 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00046 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00192 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47309 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47510 * 119.99847 * 20 18 16 23 23 H 1.48506 * 109.47246 * 239.99882 * 20 18 16 24 24 H 1.08997 * 109.47405 * 59.99632 * 1 2 3 25 25 H 1.09001 * 109.46988 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46752 * 299.99709 * 1 2 3 27 27 H 1.09005 * 109.47090 * 239.99976 * 2 1 3 28 28 H 1.09004 * 109.47056 * 120.00332 * 2 1 3 29 29 H 1.09011 * 109.46560 * 60.00020 * 3 2 1 30 30 H 1.08994 * 109.47580 * 300.00600 * 3 2 1 31 31 H 1.08999 * 110.31073 * 98.53364 * 6 4 3 32 32 H 1.09006 * 110.53160 * 336.24041 * 6 4 3 33 33 H 1.09001 * 110.37243 * 200.66132 * 8 7 6 34 34 H 1.09002 * 110.46293 * 78.37339 * 8 7 6 35 35 H 1.00897 * 111.00315 * 324.34842 * 11 9 8 36 36 H 1.09000 * 109.47585 * 59.99341 * 12 11 9 37 37 H 1.09001 * 109.46551 * 299.99826 * 12 11 9 38 38 H 1.08996 * 109.47452 * 59.99844 * 13 12 11 39 39 H 1.09001 * 109.46997 * 299.99418 * 13 12 11 40 40 H 1.09001 * 109.47502 * 60.00153 * 14 13 12 41 41 H 1.09001 * 109.47289 * 299.99950 * 14 13 12 42 42 H 1.09001 * 109.47002 * 299.99574 * 15 14 13 43 43 H 1.08993 * 109.46955 * 60.00011 * 15 14 13 44 44 H 0.96996 * 120.00505 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9526 0.8188 -0.8086 6 6 4.1141 0.9586 1.3654 7 8 5.2833 1.7717 1.6059 8 6 4.9185 3.1003 1.1726 9 6 4.1114 2.8841 -0.1267 10 1 4.7596 2.9738 -0.9984 11 7 3.0032 3.8446 -0.2100 12 6 3.4336 5.0902 -0.8590 13 6 2.2553 6.0637 -0.9268 14 6 2.7039 7.3611 -1.6021 15 6 1.5253 8.3345 -1.6705 16 6 1.9670 9.6122 -2.3363 17 1 2.9865 9.7195 -2.6762 18 6 1.0699 10.6446 -2.5104 19 7 -0.1713 10.5142 -2.0960 20 14 1.6176 12.2287 -3.3350 21 1 3.0519 12.1237 -3.7056 22 1 0.8056 12.4571 -4.5572 23 1 1.4311 13.3651 -2.3973 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9562 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 4.3890 -0.0948 1.3116 32 1 3.3739 1.1174 2.1497 33 1 5.8113 3.6920 0.9706 34 1 4.3014 3.5906 1.9254 35 1 2.6142 4.0281 0.7027 36 1 3.7838 4.8721 -1.8679 37 1 4.2427 5.5391 -0.2828 38 1 1.9057 6.2818 0.0823 39 1 1.4460 5.6149 -1.5027 40 1 3.0538 7.1434 -2.6112 41 1 3.5131 7.8098 -1.0259 42 1 0.7164 7.8856 -2.2470 43 1 1.1751 8.5523 -0.6616 44 1 -0.8024 11.2406 -2.2182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699792177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:05 Heat of formation + Delta-G solvation = -100.417963 kcal Electronic energy + Delta-G solvation = -18963.574407 eV Core-core repulsion = 16106.575513 eV Total energy + Delta-G solvation = -2856.998894 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.88707 -37.57391 -36.29485 -35.63133 -34.03994 -31.89561 -30.33307 -28.45978 -26.73320 -25.97163 -23.95802 -22.99478 -22.29865 -21.66894 -20.50637 -18.44710 -17.57749 -17.08018 -16.69320 -16.50500 -16.37669 -15.79494 -15.25884 -14.97053 -14.56828 -14.45598 -14.36206 -13.74386 -13.73170 -13.46162 -13.17133 -13.05223 -12.86817 -12.71121 -12.49108 -12.20700 -12.16489 -12.07859 -11.84776 -11.52164 -11.38517 -11.36151 -11.28899 -11.21451 -10.95052 -10.80891 -10.55942 -9.33868 -8.20112 -6.31410 1.39550 1.39749 1.53273 2.40688 2.85563 3.12718 3.32783 3.63685 3.75961 3.89129 4.07311 4.17556 4.25522 4.27977 4.31619 4.41192 4.45539 4.54909 4.62863 4.73829 4.76138 4.82735 4.83864 4.86706 4.94141 4.98582 5.08524 5.14931 5.20998 5.26301 5.28635 5.37323 5.40775 5.52652 5.55958 5.65683 5.75641 5.78896 5.87587 6.09191 6.26110 6.40817 6.86582 7.38017 8.91917 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.028752 B = 0.003203 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.594915 B = 8738.595341 C = 9497.804278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.088 4.088 4 C -0.108 4.108 5 H 0.088 0.912 6 C 0.045 3.955 7 O -0.396 6.396 8 C 0.017 3.983 9 C 0.059 3.941 10 H 0.089 0.911 11 N -0.673 5.673 12 C 0.070 3.930 13 C -0.104 4.104 14 C -0.097 4.097 15 C 0.022 3.978 16 C -0.544 4.544 17 H 0.059 0.941 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.345 0.655 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.050 0.950 42 H -0.011 1.011 43 H -0.010 1.010 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.322 -21.570 6.144 23.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.126 4.126 4 C -0.127 4.127 5 H 0.106 0.894 6 C -0.031 4.031 7 O -0.315 6.315 8 C -0.061 4.061 9 C -0.052 4.052 10 H 0.108 0.892 11 N -0.305 5.305 12 C -0.059 4.059 13 C -0.142 4.142 14 C -0.135 4.135 15 C -0.015 4.015 16 C -0.582 4.582 17 H 0.077 0.923 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.790 3.210 21 H -0.186 1.186 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.164 0.836 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.007 0.993 43 H 0.008 0.992 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.120 -21.828 5.667 23.649 hybrid contribution 0.168 1.585 0.248 1.613 sum 7.288 -20.243 5.915 22.313 Atomic orbital electron populations 1.21765 0.96054 1.01650 1.01593 1.21594 0.95813 0.96766 1.02060 1.21294 0.92482 0.96124 1.02673 1.22598 0.97281 0.94765 0.98044 0.89396 1.23763 0.87243 0.96376 0.95727 1.89099 1.36537 1.20307 1.85510 1.24267 1.00616 0.85582 0.95662 1.22983 0.91369 0.93174 0.97668 0.89247 1.60588 1.31047 1.11718 1.27100 1.21904 0.95842 0.88845 0.99331 1.21444 0.98089 0.94378 1.00319 1.21399 0.98013 0.94672 0.99466 1.19027 0.93984 0.93726 0.94731 1.21780 0.96983 1.00818 1.38609 0.92254 1.26013 0.94949 1.02690 0.96405 1.70104 1.04938 1.34000 1.48421 0.85394 0.78810 0.78673 0.78136 1.18556 1.20326 1.20326 0.93391 0.92273 0.92959 0.92008 0.91578 0.92441 0.91583 0.87939 0.91710 0.88935 0.91982 0.83554 0.91029 0.94748 0.92839 0.92583 0.93156 0.93157 0.99259 0.99202 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 71.98 0.71 -1.53 16 2 C -0.12 -1.74 5.81 30.59 0.18 -1.56 16 3 C -0.09 -1.46 3.64 30.59 0.11 -1.34 16 4 C -0.11 -1.75 3.13 -9.67 -0.03 -1.78 16 5 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 6 C 0.05 0.72 6.53 72.59 0.47 1.20 16 7 O -0.40 -8.47 11.65 -148.98 -1.74 -10.21 16 8 C 0.02 0.33 7.29 72.48 0.53 0.86 16 9 C 0.06 1.10 3.40 45.93 0.16 1.26 16 10 H 0.09 1.72 7.85 -2.39 -0.02 1.70 16 11 N -0.67 -14.27 4.51 -486.36 -2.19 -16.47 16 12 C 0.07 1.75 5.54 86.30 0.48 2.23 16 13 C -0.10 -3.40 5.47 30.59 0.17 -3.23 16 14 C -0.10 -3.97 5.15 30.60 0.16 -3.81 16 15 C 0.02 1.20 4.97 29.85 0.15 1.35 16 16 C -0.54 -31.53 9.11 25.60 0.23 -31.29 16 17 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 18 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 19 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 20 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 21 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.07 0.80 7.64 -2.38 -0.02 0.78 16 29 H 0.06 0.99 7.64 -2.38 -0.02 0.97 16 30 H 0.07 1.36 7.63 -2.39 -0.02 1.34 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.32 16 32 H 0.06 0.98 7.76 -2.38 -0.02 0.96 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 1.13 7.58 -2.39 -0.02 1.12 16 35 H 0.34 6.98 7.82 -89.70 -0.70 6.28 16 36 H 0.07 1.81 8.08 -2.39 -0.02 1.79 16 37 H 0.03 0.82 8.14 -2.39 -0.02 0.81 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 42 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 43 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 44 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -64.42 347.77 2.39 -62.03 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.22 Total: 12.70 kcal Atomic # 6 Polarization: -41.16 SS G_CDS: 3.78 Total: -37.38 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -1.91 Total: -73.88 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -1.74 Total: -10.21 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -64.42 2.39 -62.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699792177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.386 kcal (2) G-P(sol) polarization free energy of solvation -64.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds