Wall clock time and date at job start Mon Mar 30 2020 06:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47179 * 2 1 4 4 C 1.53001 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.09006 * 110.56415 * 306.13928 * 4 3 2 6 6 C 1.54480 * 110.51113 * 68.81339 * 4 3 2 7 7 O 1.44425 * 104.80090 * 142.62708 * 6 4 3 8 8 C 1.44648 * 105.36637 * 319.56502 * 7 6 4 9 9 C 1.54479 * 104.69756 * 40.35087 * 8 7 6 10 10 H 1.08997 * 110.51273 * 94.90000 * 9 8 7 11 11 N 1.46898 * 110.50838 * 217.47403 * 9 8 7 12 12 C 1.46894 * 111.00067 * 280.86030 * 11 9 8 13 13 C 1.53000 * 109.47198 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46990 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46990 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47432 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99736 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00402 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99970 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00134 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47341 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.47185 * 59.99658 * 20 18 16 23 23 H 1.48509 * 109.47163 * 299.99947 * 20 18 16 24 24 H 1.08989 * 109.47219 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46543 * 299.99865 * 1 2 3 26 26 H 1.09003 * 109.47046 * 59.99494 * 1 2 3 27 27 H 1.09009 * 109.46809 * 240.00606 * 2 1 3 28 28 H 1.08991 * 109.47387 * 120.00648 * 2 1 3 29 29 H 1.08995 * 109.46629 * 60.00641 * 3 2 1 30 30 H 1.08998 * 109.47153 * 300.00440 * 3 2 1 31 31 H 1.08998 * 110.37604 * 261.45448 * 6 4 3 32 32 H 1.08999 * 110.37267 * 23.68292 * 6 4 3 33 33 H 1.08996 * 110.34372 * 281.59259 * 8 7 6 34 34 H 1.09007 * 110.50347 * 159.18720 * 8 7 6 35 35 H 1.00908 * 110.99598 * 156.90904 * 11 9 8 36 36 H 1.09003 * 109.47321 * 60.00265 * 12 11 9 37 37 H 1.09004 * 109.47273 * 300.00585 * 12 11 9 38 38 H 1.08997 * 109.47226 * 60.00417 * 13 12 11 39 39 H 1.08997 * 109.47266 * 299.99583 * 13 12 11 40 40 H 1.09006 * 109.47182 * 60.00147 * 14 13 12 41 41 H 1.09002 * 109.47469 * 299.99527 * 14 13 12 42 42 H 1.08995 * 109.47308 * 59.99710 * 15 14 13 43 43 H 1.09004 * 109.47133 * 300.00060 * 15 14 13 44 44 H 0.97006 * 119.99449 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9533 0.8405 0.8233 6 6 4.1108 0.9198 -1.3500 7 8 5.2793 1.7257 -1.6164 8 6 4.9175 3.0685 -1.2186 9 6 4.1115 2.8869 0.0867 10 1 4.7605 2.9997 0.9551 11 7 3.0033 3.8494 0.1454 12 6 3.4800 5.1767 0.5563 13 6 2.3001 6.1494 0.6064 14 6 2.7967 7.5320 1.0338 15 6 1.6167 8.5045 1.0845 16 6 2.1059 9.8666 1.5048 17 1 3.1536 10.0228 1.7152 18 6 1.2158 10.9130 1.6219 19 7 -0.0602 10.7227 1.3663 20 14 1.8221 12.6010 2.1436 21 1 0.6768 13.5450 2.1927 22 1 2.8252 13.0911 1.1644 23 1 2.4465 12.5091 3.4879 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 1.6768 1.9562 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 4.3860 -0.1316 -1.2669 32 1 3.3670 1.0557 -2.1351 33 1 4.2992 3.5370 -1.9843 34 1 5.8106 3.6655 -1.0332 35 1 2.2721 3.5219 0.7589 36 1 4.2174 5.5362 -0.1614 37 1 3.9370 5.1091 1.5436 38 1 1.5630 5.7898 1.3244 39 1 1.8429 6.2172 -0.3807 40 1 3.5336 7.8914 0.3154 41 1 3.2542 7.4647 2.0209 42 1 0.8801 8.1450 1.8030 43 1 1.1587 8.5720 0.0977 44 1 -0.3750 9.8459 1.0957 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699792178.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:08 Heat of formation + Delta-G solvation = -83.777425 kcal Electronic energy + Delta-G solvation = -19003.807850 eV Core-core repulsion = 16147.530543 eV Total energy + Delta-G solvation = -2856.277306 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.10018 -36.53367 -35.58326 -34.25254 -32.42621 -30.89217 -28.96588 -27.06891 -26.21280 -24.19622 -22.98284 -21.65646 -21.43608 -20.38590 -19.65911 -16.79929 -16.62573 -16.21139 -15.91220 -15.73803 -14.77729 -14.63351 -14.32911 -13.84270 -13.69171 -13.24233 -12.98812 -12.81952 -12.75621 -12.33663 -12.12387 -11.90490 -11.44710 -11.35701 -11.14792 -11.03645 -10.88763 -10.76266 -10.71321 -10.59292 -10.57890 -10.10412 -9.97144 -9.77386 -9.61418 -8.53023 -8.48472 -8.29421 -6.33119 -4.01634 3.45070 3.47327 3.66048 3.70194 4.10674 4.19348 4.47460 4.56255 4.57988 4.79865 4.87891 4.99814 5.08784 5.10296 5.29792 5.35536 5.39867 5.44432 5.46311 5.47807 5.55145 5.61562 5.65527 5.72094 5.74714 5.79858 5.88843 5.98515 6.03407 6.10165 6.13487 6.38136 6.54546 6.68143 6.81184 6.92122 7.08594 7.27954 7.45876 7.59381 8.26526 8.50046 8.92380 9.70826 11.07624 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.029178 B = 0.003211 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.403229 B = 8718.946012 C = 9485.359938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.108 4.108 4 C -0.121 4.121 5 H 0.081 0.919 6 C 0.054 3.946 7 O -0.379 6.379 8 C 0.054 3.946 9 C 0.055 3.945 10 H 0.053 0.947 11 N -0.681 5.681 12 C 0.057 3.943 13 C -0.116 4.116 14 C -0.102 4.102 15 C 0.008 3.992 16 C -0.602 4.602 17 H 0.047 0.953 18 C 0.013 3.987 19 N -0.914 5.914 20 Si 1.069 2.931 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.288 1.288 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.345 0.655 36 H 0.070 0.930 37 H 0.028 0.972 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.005 0.995 43 H 0.007 0.993 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.886 -22.488 -3.150 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.145 4.145 4 C -0.140 4.140 5 H 0.100 0.900 6 C -0.023 4.023 7 O -0.298 6.298 8 C -0.024 4.024 9 C -0.056 4.056 10 H 0.071 0.929 11 N -0.316 5.316 12 C -0.072 4.072 13 C -0.154 4.154 14 C -0.140 4.140 15 C -0.029 4.029 16 C -0.641 4.641 17 H 0.066 0.934 18 C -0.191 4.191 19 N -0.551 5.551 20 Si 0.897 3.103 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.215 1.215 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.167 0.833 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.023 0.977 43 H 0.025 0.975 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.624 -20.864 -3.597 21.906 hybrid contribution 0.532 -1.634 0.820 1.904 sum 6.157 -22.498 -2.776 23.489 Atomic orbital electron populations 1.21773 0.95676 1.01482 1.02158 1.21576 0.96110 0.96841 1.01790 1.21571 0.93077 0.96609 1.03282 1.22671 0.96925 0.95520 0.98920 0.90037 1.23453 0.87953 0.95669 0.95190 1.89137 1.35331 1.19433 1.85869 1.23531 0.98965 0.84625 0.95240 1.22876 0.92963 0.91625 0.98097 0.92867 1.60764 1.10925 1.02304 1.57611 1.22126 0.98400 0.88435 0.98248 1.21643 0.96578 0.95358 1.01791 1.21460 0.99905 0.93021 0.99633 1.19216 0.93357 0.94327 0.95990 1.22094 0.96108 0.95568 1.50288 0.93442 1.25863 0.94319 1.03976 0.94916 1.70782 1.14719 1.26332 1.43260 0.83553 0.75316 0.75161 0.76278 1.20763 1.21459 1.21495 0.92927 0.92633 0.92527 0.92072 0.92257 0.91625 0.90223 0.89482 0.91902 0.90831 0.89411 0.83334 0.91184 0.95407 0.92841 0.91657 0.93230 0.93514 0.97674 0.97516 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.72 16 2 C -0.13 -0.88 5.80 -26.73 -0.16 -1.03 16 3 C -0.11 -0.88 3.48 -26.73 -0.09 -0.97 16 4 C -0.12 -1.07 3.13 -89.05 -0.28 -1.34 16 5 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 6 C 0.05 0.50 6.44 37.93 0.24 0.74 16 7 O -0.38 -4.54 11.65 -35.23 -0.41 -4.95 16 8 C 0.05 0.60 6.93 37.93 0.26 0.87 16 9 C 0.06 0.58 3.39 -66.15 -0.22 0.36 16 10 H 0.05 0.58 7.99 -51.93 -0.42 0.16 16 11 N -0.68 -7.96 5.54 -105.08 -0.58 -8.54 16 12 C 0.06 0.77 5.53 -3.83 -0.02 0.75 16 13 C -0.12 -1.94 5.47 -26.73 -0.15 -2.08 16 14 C -0.10 -2.12 5.15 -26.73 -0.14 -2.26 16 15 C 0.01 0.21 4.28 -27.88 -0.12 0.09 16 16 C -0.60 -17.64 9.11 -34.44 -0.31 -17.96 16 17 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 18 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 19 N -0.91 -28.64 13.65 55.43 0.76 -27.88 16 20 Si 1.07 25.75 29.90 -169.99 -5.08 20.67 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.40 7.57 -51.92 -0.39 0.01 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.55 6.48 -51.93 -0.34 0.21 16 30 H 0.08 0.74 7.85 -51.93 -0.41 0.33 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.56 7.77 -51.93 -0.40 0.16 16 33 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 34 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.34 3.78 6.08 -39.29 -0.24 3.54 16 36 H 0.07 0.96 7.84 -51.93 -0.41 0.56 16 37 H 0.03 0.38 8.10 -51.93 -0.42 -0.04 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.00 0.14 8.01 -51.93 -0.42 -0.28 16 43 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 44 H 0.27 8.36 7.22 -40.82 -0.29 8.07 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -31.26 344.45 -9.26 -40.52 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -8.42 Total: -1.74 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -0.71 Total: -23.28 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.17 Total: -36.42 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.41 Total: -4.95 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.26 -9.26 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699792178.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.256 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds