Wall clock time and date at job start Mon Mar 30 2020 06:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47179 * 2 1 4 4 C 1.53001 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.09006 * 110.56415 * 306.13928 * 4 3 2 6 6 C 1.54480 * 110.51113 * 68.81339 * 4 3 2 7 7 O 1.44425 * 104.80090 * 142.62708 * 6 4 3 8 8 C 1.44648 * 105.36637 * 319.56502 * 7 6 4 9 9 C 1.54479 * 104.69756 * 40.35087 * 8 7 6 10 10 H 1.08997 * 110.51273 * 94.90000 * 9 8 7 11 11 N 1.46898 * 110.50838 * 217.47403 * 9 8 7 12 12 C 1.46894 * 111.00067 * 280.86030 * 11 9 8 13 13 C 1.53000 * 109.47198 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46990 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46990 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47432 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99736 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00402 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99970 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00134 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47341 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.47185 * 59.99658 * 20 18 16 23 23 H 1.48509 * 109.47163 * 299.99947 * 20 18 16 24 24 H 1.08989 * 109.47219 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46543 * 299.99865 * 1 2 3 26 26 H 1.09003 * 109.47046 * 59.99494 * 1 2 3 27 27 H 1.09009 * 109.46809 * 240.00606 * 2 1 3 28 28 H 1.08991 * 109.47387 * 120.00648 * 2 1 3 29 29 H 1.08995 * 109.46629 * 60.00641 * 3 2 1 30 30 H 1.08998 * 109.47153 * 300.00440 * 3 2 1 31 31 H 1.08998 * 110.37604 * 261.45448 * 6 4 3 32 32 H 1.08999 * 110.37267 * 23.68292 * 6 4 3 33 33 H 1.08996 * 110.34372 * 281.59259 * 8 7 6 34 34 H 1.09007 * 110.50347 * 159.18720 * 8 7 6 35 35 H 1.00908 * 110.99598 * 156.90904 * 11 9 8 36 36 H 1.09003 * 109.47321 * 60.00265 * 12 11 9 37 37 H 1.09004 * 109.47273 * 300.00585 * 12 11 9 38 38 H 1.08997 * 109.47226 * 60.00417 * 13 12 11 39 39 H 1.08997 * 109.47266 * 299.99583 * 13 12 11 40 40 H 1.09006 * 109.47182 * 60.00147 * 14 13 12 41 41 H 1.09002 * 109.47469 * 299.99527 * 14 13 12 42 42 H 1.08995 * 109.47308 * 59.99710 * 15 14 13 43 43 H 1.09004 * 109.47133 * 300.00060 * 15 14 13 44 44 H 0.97006 * 119.99449 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9533 0.8405 0.8233 6 6 4.1108 0.9198 -1.3500 7 8 5.2793 1.7257 -1.6164 8 6 4.9175 3.0685 -1.2186 9 6 4.1115 2.8869 0.0867 10 1 4.7605 2.9997 0.9551 11 7 3.0033 3.8494 0.1454 12 6 3.4800 5.1767 0.5563 13 6 2.3001 6.1494 0.6064 14 6 2.7967 7.5320 1.0338 15 6 1.6167 8.5045 1.0845 16 6 2.1059 9.8666 1.5048 17 1 3.1536 10.0228 1.7152 18 6 1.2158 10.9130 1.6219 19 7 -0.0602 10.7227 1.3663 20 14 1.8221 12.6010 2.1436 21 1 0.6768 13.5450 2.1927 22 1 2.8252 13.0911 1.1644 23 1 2.4465 12.5091 3.4879 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 1.6768 1.9562 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 4.3860 -0.1316 -1.2669 32 1 3.3670 1.0557 -2.1351 33 1 4.2992 3.5370 -1.9843 34 1 5.8106 3.6655 -1.0332 35 1 2.2721 3.5219 0.7589 36 1 4.2174 5.5362 -0.1614 37 1 3.9370 5.1091 1.5436 38 1 1.5630 5.7898 1.3244 39 1 1.8429 6.2172 -0.3807 40 1 3.5336 7.8914 0.3154 41 1 3.2542 7.4647 2.0209 42 1 0.8801 8.1450 1.8030 43 1 1.1587 8.5720 0.0977 44 1 -0.3750 9.8459 1.0957 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699792178.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:07 Heat of formation + Delta-G solvation = -102.594017 kcal Electronic energy + Delta-G solvation = -19004.623798 eV Core-core repulsion = 16147.530543 eV Total energy + Delta-G solvation = -2857.093255 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.91556 -37.73630 -36.52841 -35.80540 -34.08290 -31.88713 -30.17567 -28.46259 -26.88732 -25.92859 -24.09698 -22.91436 -22.38834 -21.84105 -20.51355 -18.88835 -17.52444 -17.20849 -16.77268 -16.57993 -16.00965 -15.68348 -15.53588 -15.35903 -14.97950 -14.45375 -14.41189 -14.04567 -13.65957 -13.49131 -13.23327 -12.90248 -12.74656 -12.56855 -12.36476 -12.27503 -12.04968 -11.96610 -11.94387 -11.70614 -11.56191 -11.46672 -11.40081 -11.35038 -10.80515 -10.63138 -10.55388 -9.47989 -8.70529 -6.40947 1.51457 1.60332 1.79840 2.56196 2.84971 3.14411 3.22121 3.43659 3.74942 3.81793 4.01322 4.10125 4.18866 4.23371 4.29636 4.36910 4.37676 4.44494 4.52091 4.66906 4.72068 4.76979 4.77910 4.81490 4.83311 4.89135 4.95991 5.03293 5.05864 5.09756 5.14262 5.19504 5.29642 5.40115 5.46707 5.50796 5.55820 5.71514 5.99926 6.02672 6.17865 6.36524 6.56956 7.41739 8.70336 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.029178 B = 0.003211 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.403229 B = 8718.946012 C = 9485.359938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.103 4.103 4 C -0.114 4.114 5 H 0.093 0.907 6 C 0.051 3.949 7 O -0.397 6.397 8 C 0.053 3.947 9 C 0.055 3.945 10 H 0.055 0.945 11 N -0.681 5.681 12 C 0.068 3.932 13 C -0.104 4.104 14 C -0.091 4.091 15 C 0.007 3.993 16 C -0.623 4.623 17 H 0.050 0.950 18 C -0.042 4.042 19 N -0.939 5.939 20 Si 1.119 2.881 21 H -0.283 1.283 22 H -0.268 1.268 23 H -0.268 1.268 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.350 0.650 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.049 0.951 42 H -0.013 1.013 43 H -0.014 1.014 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.050 -23.310 -2.628 24.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.141 4.141 4 C -0.133 4.133 5 H 0.112 0.888 6 C -0.026 4.026 7 O -0.316 6.316 8 C -0.025 4.025 9 C -0.055 4.055 10 H 0.073 0.927 11 N -0.317 5.317 12 C -0.061 4.061 13 C -0.142 4.142 14 C -0.130 4.130 15 C -0.030 4.030 16 C -0.660 4.660 17 H 0.069 0.931 18 C -0.239 4.239 19 N -0.576 5.576 20 Si 0.939 3.061 21 H -0.208 1.208 22 H -0.193 1.193 23 H -0.193 1.193 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.173 0.827 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.006 0.994 43 H 0.005 0.995 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.795 -21.725 -3.080 22.970 hybrid contribution 0.145 -1.430 0.628 1.569 sum 6.940 -23.155 -2.452 24.297 Atomic orbital electron populations 1.21784 0.95850 1.01884 1.01710 1.21548 0.95916 0.96003 1.02453 1.21505 0.92644 0.97365 1.02539 1.22649 0.97163 0.94338 0.99138 0.88842 1.23615 0.87299 0.96329 0.95316 1.89119 1.36588 1.19806 1.86111 1.23522 0.99085 0.84623 0.95242 1.22887 0.92534 0.92317 0.97763 0.92664 1.60690 1.11529 1.01771 1.57697 1.21896 0.96748 0.88745 0.98704 1.21453 0.97766 0.93891 1.01113 1.21293 0.97620 0.94014 1.00029 1.19195 0.94881 0.94888 0.94059 1.22568 0.96421 0.97059 1.50001 0.93117 1.27521 0.93865 1.08353 0.94172 1.70921 1.15940 1.25655 1.45086 0.82928 0.75357 0.70445 0.77351 1.20790 1.19346 1.19275 0.92125 0.93004 0.93081 0.91457 0.91499 0.91767 0.91536 0.87654 0.91919 0.91865 0.89052 0.82715 0.91114 0.94828 0.92687 0.92477 0.93153 0.93184 0.99448 0.99542 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 71.98 0.71 -1.27 16 2 C -0.12 -1.47 5.80 30.60 0.18 -1.29 16 3 C -0.10 -1.51 3.48 30.60 0.11 -1.40 16 4 C -0.11 -1.78 3.13 -9.78 -0.03 -1.81 16 5 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 6 C 0.05 0.84 6.44 72.49 0.47 1.31 16 7 O -0.40 -8.98 11.65 -148.98 -1.74 -10.72 16 8 C 0.05 1.12 6.93 72.48 0.50 1.63 16 9 C 0.06 1.08 3.39 45.93 0.16 1.23 16 10 H 0.06 1.08 7.99 -2.39 -0.02 1.07 16 11 N -0.68 -15.00 5.54 -486.35 -2.70 -17.69 16 12 C 0.07 1.77 5.53 86.30 0.48 2.25 16 13 C -0.10 -3.43 5.47 30.60 0.17 -3.26 16 14 C -0.09 -3.78 5.15 30.60 0.16 -3.63 16 15 C 0.01 0.37 4.28 29.85 0.13 0.49 16 16 C -0.62 -36.67 9.11 25.60 0.23 -36.43 16 17 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 18 C -0.04 -2.51 5.46 84.65 0.46 -2.05 16 19 N -0.94 -59.70 13.65 21.45 0.29 -59.41 16 20 Si 1.12 51.03 29.90 68.60 2.05 53.08 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.74 7.57 -2.38 -0.02 0.72 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.97 6.48 -2.39 -0.02 0.95 16 30 H 0.07 1.17 7.85 -2.39 -0.02 1.15 16 31 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.04 7.77 -2.39 -0.02 1.02 16 33 H 0.06 1.47 8.06 -2.39 -0.02 1.45 16 34 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.35 7.15 6.08 -89.69 -0.55 6.61 16 36 H 0.07 1.85 7.84 -2.39 -0.02 1.83 16 37 H 0.03 0.85 8.10 -2.38 -0.02 0.83 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H -0.01 -0.72 8.01 -2.39 -0.02 -0.74 16 43 H -0.01 -0.78 8.01 -2.38 -0.02 -0.80 16 44 H 0.25 16.40 7.22 -92.70 -0.67 15.73 16 Total: -1.00 -66.80 344.45 2.11 -64.68 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.48 Total: 14.27 kcal Atomic # 6 Polarization: -47.94 SS G_CDS: 3.72 Total: -44.22 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -2.40 Total: -77.10 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -1.74 Total: -10.72 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal Total: -66.80 2.11 -64.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699792178.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.910 kcal (2) G-P(sol) polarization free energy of solvation -66.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds