Wall clock time and date at job start Mon Mar 30 2020 06:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 180.02562 * 3 2 1 5 5 H 1.09006 * 110.45416 * 305.69416 * 4 3 2 6 6 C 1.54477 * 110.51276 * 68.30395 * 4 3 2 7 7 O 1.44779 * 104.62853 * 94.70732 * 6 4 3 8 8 C 1.44424 * 105.29804 * 40.53283 * 7 6 4 9 9 C 1.54482 * 104.80566 * 319.45500 * 8 7 6 10 10 H 1.09002 * 110.51039 * 265.33415 * 9 8 7 11 11 N 1.46902 * 110.62736 * 142.67736 * 9 8 7 12 12 C 1.46903 * 110.99634 * 90.29232 * 11 9 8 13 13 C 1.52995 * 109.46755 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47062 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47388 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47540 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99919 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00342 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00008 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00086 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46702 * 90.00075 * 20 18 16 22 22 H 1.48497 * 109.47459 * 210.00418 * 20 18 16 23 23 H 1.48501 * 109.47192 * 330.00683 * 20 18 16 24 24 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 25 25 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 27 27 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 28 28 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 29 29 H 1.09001 * 109.47289 * 299.99953 * 3 2 1 30 30 H 1.09004 * 109.47261 * 59.99697 * 3 2 1 31 31 H 1.09002 * 110.37158 * 213.50095 * 6 4 3 32 32 H 1.08993 * 110.37117 * 335.83231 * 6 4 3 33 33 H 1.09003 * 110.37279 * 200.62628 * 8 7 6 34 34 H 1.08996 * 110.46360 * 78.33567 * 8 7 6 35 35 H 1.00896 * 111.00069 * 326.34020 * 11 9 8 36 36 H 1.08999 * 109.47039 * 299.99911 * 12 11 9 37 37 H 1.09004 * 109.46682 * 59.99753 * 12 11 9 38 38 H 1.08999 * 109.47488 * 299.99898 * 13 12 11 39 39 H 1.09004 * 109.47514 * 60.00524 * 13 12 11 40 40 H 1.09000 * 109.47489 * 300.00287 * 14 13 12 41 41 H 1.09007 * 109.46920 * 60.00085 * 14 13 12 42 42 H 1.09000 * 109.47088 * 300.00591 * 15 14 13 43 43 H 1.09007 * 109.46972 * 60.00176 * 15 14 13 44 44 H 0.97006 * 119.99889 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9513 0.8464 0.8286 6 6 4.1108 0.9078 -1.3453 7 8 4.3462 2.0935 -2.1421 8 6 4.9153 3.0584 -1.2305 9 6 4.1115 2.8875 0.0776 10 1 3.2891 3.6019 0.1166 11 7 4.9861 3.0470 1.2470 12 6 5.0304 4.4488 1.6840 13 6 5.9484 4.5746 2.9014 14 6 5.9951 6.0347 3.3562 15 6 6.9127 6.1606 4.5740 16 6 6.9582 7.5986 5.0224 17 1 6.3892 8.3478 4.4920 18 6 7.7262 7.9578 6.1096 19 7 7.7654 9.2127 6.5011 20 14 8.7099 6.6618 7.0274 21 1 10.0619 6.5474 6.4239 22 1 8.8361 7.0543 8.4539 23 1 8.0137 5.3535 6.9336 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 5.0419 0.3627 -1.1900 32 1 3.3704 0.2671 -1.8241 33 1 4.7929 4.0683 -1.6219 34 1 5.9701 2.8441 -1.0585 35 1 5.9134 2.6985 1.0552 36 1 5.4130 5.0699 0.8741 37 1 4.0261 4.7779 1.9510 38 1 5.5654 3.9536 3.7111 39 1 6.9528 4.2454 2.6348 40 1 6.3783 6.6555 2.5464 41 1 4.9909 6.3645 3.6228 42 1 6.5290 5.5398 5.3837 43 1 7.9170 5.8307 4.3079 44 1 8.3061 9.4655 7.2658 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699792179.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:10 Heat of formation + Delta-G solvation = -82.584817 kcal Electronic energy + Delta-G solvation = -18795.539667 eV Core-core repulsion = 15939.314076 eV Total energy + Delta-G solvation = -2856.225591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.10237 -36.47388 -35.55023 -34.20429 -32.31659 -31.08015 -29.37168 -27.44638 -26.19985 -24.24618 -23.22742 -21.45579 -21.16564 -20.35082 -19.93461 -16.79976 -16.66895 -16.51964 -15.81157 -15.20065 -15.05047 -14.52397 -14.36044 -14.04143 -13.68831 -13.27966 -12.95237 -12.86981 -12.62774 -12.36147 -12.30170 -11.89022 -11.75868 -11.53414 -11.40385 -11.17474 -11.00468 -10.84739 -10.78121 -10.67751 -10.57042 -10.02615 -9.87840 -9.68125 -9.48057 -9.14372 -8.52148 -8.49383 -6.02431 -4.00116 3.32030 3.39343 3.43896 3.61533 4.04617 4.36840 4.45712 4.47206 4.62911 4.74982 4.79163 4.91134 4.99750 5.07721 5.25970 5.30752 5.32195 5.36004 5.42716 5.45476 5.51638 5.56937 5.61931 5.68889 5.73717 5.77733 5.87588 5.99547 6.02798 6.07507 6.10504 6.35164 6.48720 6.64846 6.75447 6.87939 7.03976 7.24755 7.34587 7.47716 7.82615 8.56659 9.02790 9.60530 11.11187 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.032061 B = 0.003034 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.130555 B = 9225.926755 C = 9559.452973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.108 4.108 4 C -0.114 4.114 5 H 0.095 0.905 6 C 0.044 3.956 7 O -0.375 6.375 8 C 0.017 3.983 9 C 0.059 3.941 10 H 0.092 0.908 11 N -0.679 5.679 12 C 0.058 3.942 13 C -0.119 4.119 14 C -0.101 4.101 15 C -0.014 4.014 16 C -0.520 4.520 17 H 0.070 0.930 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.265 1.265 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.340 0.660 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.015 0.985 43 H 0.009 0.991 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.288 -19.235 -15.586 26.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.146 4.146 4 C -0.134 4.134 5 H 0.114 0.886 6 C -0.033 4.033 7 O -0.293 6.293 8 C -0.062 4.062 9 C -0.052 4.052 10 H 0.110 0.890 11 N -0.310 5.310 12 C -0.071 4.071 13 C -0.157 4.157 14 C -0.139 4.139 15 C -0.051 4.051 16 C -0.558 4.558 17 H 0.089 0.911 18 C -0.137 4.137 19 N -0.545 5.545 20 Si 0.708 3.292 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.190 1.190 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.159 0.841 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.034 0.966 43 H 0.028 0.972 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.749 -19.257 -15.226 26.800 hybrid contribution 1.255 -0.102 0.105 1.263 sum -9.495 -19.359 -15.121 26.336 Atomic orbital electron populations 1.21774 0.95865 1.01505 1.01901 1.21583 0.95909 0.96887 1.01935 1.21604 0.93624 0.96949 1.02426 1.22575 0.96313 0.96230 0.98233 0.88637 1.23654 0.99980 0.88598 0.91071 1.89177 1.83032 1.24140 1.32943 1.24238 0.97060 0.94074 0.90850 1.23049 0.96422 0.97343 0.88397 0.88969 1.60603 1.15693 1.20775 1.33925 1.22128 1.00897 0.86946 0.97102 1.21676 0.98241 0.99127 0.96611 1.21416 1.00564 0.92921 0.99036 1.19568 0.94433 0.97649 0.93473 1.21188 1.28429 0.92625 1.13573 0.91138 1.25054 0.96443 0.95189 0.96977 1.69923 1.41092 1.16547 1.26919 0.86756 0.80715 0.82692 0.78987 1.20368 1.21436 1.18960 0.92793 0.92871 0.92648 0.91864 0.92103 0.91767 0.91366 0.92381 0.88916 0.89134 0.92252 0.84081 0.95251 0.90975 0.91597 0.92740 0.93052 0.92794 0.96649 0.97227 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.13 -0.87 5.78 -26.73 -0.15 -1.03 16 3 C -0.11 -0.88 4.48 -26.73 -0.12 -1.00 16 4 C -0.11 -0.99 2.91 -89.05 -0.26 -1.25 16 5 H 0.10 0.87 7.97 -51.93 -0.41 0.45 16 6 C 0.04 0.38 7.06 37.93 0.27 0.64 16 7 O -0.37 -4.17 11.66 -35.23 -0.41 -4.58 16 8 C 0.02 0.16 7.32 37.93 0.28 0.44 16 9 C 0.06 0.58 3.09 -66.14 -0.20 0.38 16 10 H 0.09 0.95 7.41 -51.93 -0.38 0.57 16 11 N -0.68 -7.52 6.25 -105.06 -0.66 -8.18 16 12 C 0.06 0.74 5.55 -3.83 -0.02 0.72 16 13 C -0.12 -1.84 5.47 -26.73 -0.15 -1.99 16 14 C -0.10 -1.98 5.15 -26.73 -0.14 -2.12 16 15 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 16 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 17 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 18 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 19 N -0.91 -28.33 13.96 55.43 0.77 -27.56 16 20 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.39 6.59 -51.93 -0.34 0.05 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.69 6.34 -51.93 -0.33 0.36 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.56 7.56 -51.93 -0.39 0.17 16 35 H 0.34 3.51 8.09 -39.29 -0.32 3.19 16 36 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 42 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 43 H 0.01 0.23 7.57 -51.92 -0.39 -0.17 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 344.94 15.07 5.20 5.20 Total: -1.00 -30.91 344.94 -8.89 -39.79 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -8.45 Total: -2.14 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -0.67 Total: -19.90 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.12 Total: -35.74 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -0.41 Total: -4.58 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.91 -8.89 -39.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699792179.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.793 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds