Wall clock time and date at job start Mon Mar 30 2020 06:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 180.02562 * 3 2 1 5 5 H 1.09006 * 110.45416 * 305.69416 * 4 3 2 6 6 C 1.54477 * 110.51276 * 68.30395 * 4 3 2 7 7 O 1.44779 * 104.62853 * 94.70732 * 6 4 3 8 8 C 1.44424 * 105.29804 * 40.53283 * 7 6 4 9 9 C 1.54482 * 104.80566 * 319.45500 * 8 7 6 10 10 H 1.09002 * 110.51039 * 265.33415 * 9 8 7 11 11 N 1.46902 * 110.62736 * 142.67736 * 9 8 7 12 12 C 1.46903 * 110.99634 * 90.29232 * 11 9 8 13 13 C 1.52995 * 109.46755 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47062 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47388 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47540 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99919 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00342 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00008 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00086 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46702 * 90.00075 * 20 18 16 22 22 H 1.48497 * 109.47459 * 210.00418 * 20 18 16 23 23 H 1.48501 * 109.47192 * 330.00683 * 20 18 16 24 24 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 25 25 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 27 27 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 28 28 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 29 29 H 1.09001 * 109.47289 * 299.99953 * 3 2 1 30 30 H 1.09004 * 109.47261 * 59.99697 * 3 2 1 31 31 H 1.09002 * 110.37158 * 213.50095 * 6 4 3 32 32 H 1.08993 * 110.37117 * 335.83231 * 6 4 3 33 33 H 1.09003 * 110.37279 * 200.62628 * 8 7 6 34 34 H 1.08996 * 110.46360 * 78.33567 * 8 7 6 35 35 H 1.00896 * 111.00069 * 326.34020 * 11 9 8 36 36 H 1.08999 * 109.47039 * 299.99911 * 12 11 9 37 37 H 1.09004 * 109.46682 * 59.99753 * 12 11 9 38 38 H 1.08999 * 109.47488 * 299.99898 * 13 12 11 39 39 H 1.09004 * 109.47514 * 60.00524 * 13 12 11 40 40 H 1.09000 * 109.47489 * 300.00287 * 14 13 12 41 41 H 1.09007 * 109.46920 * 60.00085 * 14 13 12 42 42 H 1.09000 * 109.47088 * 300.00591 * 15 14 13 43 43 H 1.09007 * 109.46972 * 60.00176 * 15 14 13 44 44 H 0.97006 * 119.99889 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9513 0.8464 0.8286 6 6 4.1108 0.9078 -1.3453 7 8 4.3462 2.0935 -2.1421 8 6 4.9153 3.0584 -1.2305 9 6 4.1115 2.8875 0.0776 10 1 3.2891 3.6019 0.1166 11 7 4.9861 3.0470 1.2470 12 6 5.0304 4.4488 1.6840 13 6 5.9484 4.5746 2.9014 14 6 5.9951 6.0347 3.3562 15 6 6.9127 6.1606 4.5740 16 6 6.9582 7.5986 5.0224 17 1 6.3892 8.3478 4.4920 18 6 7.7262 7.9578 6.1096 19 7 7.7654 9.2127 6.5011 20 14 8.7099 6.6618 7.0274 21 1 10.0619 6.5474 6.4239 22 1 8.8361 7.0543 8.4539 23 1 8.0137 5.3535 6.9336 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 5.0419 0.3627 -1.1900 32 1 3.3704 0.2671 -1.8241 33 1 4.7929 4.0683 -1.6219 34 1 5.9701 2.8441 -1.0585 35 1 5.9134 2.6985 1.0552 36 1 5.4130 5.0699 0.8741 37 1 4.0261 4.7779 1.9510 38 1 5.5654 3.9536 3.7111 39 1 6.9528 4.2454 2.6348 40 1 6.3783 6.6555 2.5464 41 1 4.9909 6.3645 3.6228 42 1 6.5290 5.5398 5.3837 43 1 7.9170 5.8307 4.3079 44 1 8.3061 9.4655 7.2658 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699792179.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:10 Heat of formation + Delta-G solvation = -102.226745 kcal Electronic energy + Delta-G solvation = -18796.391405 eV Core-core repulsion = 15939.314076 eV Total energy + Delta-G solvation = -2857.077329 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.85877 -37.61421 -36.20487 -35.75784 -34.15610 -32.04550 -30.61187 -28.63718 -26.92050 -25.75388 -23.95809 -22.79925 -22.04955 -21.56067 -20.98961 -18.85987 -17.47498 -17.41023 -16.72228 -16.34924 -16.11449 -15.87764 -15.39962 -15.03801 -14.81676 -14.43318 -14.41366 -13.73634 -13.68757 -13.54458 -13.32073 -13.14888 -12.91248 -12.79285 -12.29818 -12.27963 -12.12837 -12.02463 -11.74998 -11.71800 -11.54915 -11.37267 -11.32413 -11.28403 -11.09035 -10.76834 -10.76317 -9.37778 -8.29697 -6.33916 1.35857 1.38229 1.50734 2.36651 2.83675 3.05729 3.24536 3.62701 3.73814 3.93606 4.05268 4.09528 4.16541 4.24108 4.28422 4.37449 4.48670 4.50896 4.58898 4.65774 4.74018 4.76671 4.78841 4.80662 4.91246 4.97091 5.00190 5.08359 5.13043 5.16247 5.20781 5.26951 5.30598 5.43053 5.49778 5.57947 5.65883 5.68770 5.74450 6.06918 6.29283 6.41030 6.74669 7.31020 8.87341 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.032061 B = 0.003034 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.130555 B = 9225.926755 C = 9559.452973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.104 4.104 4 C -0.108 4.108 5 H 0.095 0.905 6 C 0.043 3.957 7 O -0.395 6.395 8 C 0.017 3.983 9 C 0.060 3.940 10 H 0.086 0.914 11 N -0.678 5.678 12 C 0.067 3.933 13 C -0.106 4.106 14 C -0.095 4.095 15 C -0.012 4.012 16 C -0.535 4.535 17 H 0.029 0.971 18 C 0.000 4.000 19 N -0.954 5.954 20 Si 0.955 3.045 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.245 1.245 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.347 0.653 36 H 0.033 0.967 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.886 -21.924 -15.932 28.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.142 4.142 4 C -0.127 4.127 5 H 0.114 0.886 6 C -0.033 4.033 7 O -0.313 6.313 8 C -0.062 4.062 9 C -0.051 4.051 10 H 0.104 0.896 11 N -0.310 5.310 12 C -0.062 4.062 13 C -0.144 4.144 14 C -0.134 4.134 15 C -0.050 4.050 16 C -0.573 4.573 17 H 0.047 0.953 18 C -0.197 4.197 19 N -0.595 5.595 20 Si 0.778 3.222 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.169 1.169 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.167 0.833 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.358 -21.962 -15.593 28.857 hybrid contribution 1.074 0.818 0.167 1.360 sum -9.284 -21.144 -15.426 27.771 Atomic orbital electron populations 1.21780 0.95660 1.01969 1.01709 1.21565 0.96086 0.96034 1.02366 1.21558 0.93261 0.97672 1.01734 1.22519 0.96544 0.95300 0.98357 0.88644 1.23780 1.00808 0.88053 0.90682 1.89159 1.83230 1.25072 1.33885 1.24248 0.97313 0.94032 0.90572 1.23038 0.96019 0.98041 0.87965 0.89599 1.60554 1.16340 1.19405 1.34657 1.21922 0.99972 0.88212 0.96115 1.21489 0.99536 0.95769 0.97629 1.21293 0.98972 0.95954 0.97157 1.19544 0.95950 0.94203 0.95292 1.21582 1.27740 0.94546 1.13468 0.95263 1.26097 0.97812 0.97663 0.98103 1.70083 1.42456 1.19085 1.27864 0.85589 0.79272 0.80031 0.77334 1.19053 1.21001 1.16887 0.92788 0.92091 0.93076 0.91779 0.91281 0.92268 0.92242 0.91462 0.87778 0.89151 0.91612 0.83329 0.94865 0.91371 0.91729 0.91763 0.93494 0.93573 0.96337 0.96346 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 71.98 0.71 -1.09 16 2 C -0.12 -1.49 5.78 30.60 0.18 -1.32 16 3 C -0.10 -1.55 4.48 30.59 0.14 -1.41 16 4 C -0.11 -1.68 2.91 -9.78 -0.03 -1.71 16 5 H 0.10 1.52 7.97 -2.38 -0.02 1.51 16 6 C 0.04 0.65 7.06 72.48 0.51 1.16 16 7 O -0.39 -8.16 11.66 -148.98 -1.74 -9.89 16 8 C 0.02 0.31 7.32 72.49 0.53 0.84 16 9 C 0.06 1.09 3.09 45.93 0.14 1.24 16 10 H 0.09 1.68 7.41 -2.39 -0.02 1.66 16 11 N -0.68 -13.59 6.25 -486.31 -3.04 -16.63 16 12 C 0.07 1.59 5.55 86.30 0.48 2.07 16 13 C -0.11 -3.08 5.47 30.59 0.17 -2.92 16 14 C -0.10 -3.67 5.15 30.59 0.16 -3.51 16 15 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 16 C -0.54 -31.61 9.66 25.60 0.25 -31.37 16 17 H 0.03 1.90 7.99 -2.91 -0.02 1.87 16 18 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 19 N -0.95 -60.97 13.96 21.44 0.30 -60.67 16 20 Si 0.95 44.84 27.47 68.60 1.88 46.72 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.73 6.59 -2.39 -0.02 0.71 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.98 8.14 -2.38 -0.02 0.97 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 1.32 6.34 -2.39 -0.02 1.31 16 33 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.11 7.56 -2.39 -0.02 1.09 16 35 H 0.35 6.26 8.09 -89.70 -0.73 5.53 16 36 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 43 H 0.02 0.83 7.57 -2.38 -0.02 0.81 16 44 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 Total: -1.00 -66.53 344.94 1.38 -65.15 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.15 Total: 13.37 kcal Atomic # 6 Polarization: -41.86 SS G_CDS: 3.82 Total: -38.05 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -2.74 Total: -77.30 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -1.74 Total: -9.89 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.72 kcal Total: -66.53 1.38 -65.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699792179.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.076 kcal (2) G-P(sol) polarization free energy of solvation -66.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds