Wall clock time and date at job start Mon Mar 30 2020 06:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46707 * 2 1 4 4 C 1.52995 * 109.46967 * 119.99627 * 2 1 3 5 5 H 1.09007 * 110.35208 * 57.86071 * 4 2 1 6 6 C 1.54947 * 110.30771 * 179.97438 * 4 2 1 7 7 C 1.55306 * 100.97824 * 155.34129 * 6 4 2 8 8 H 1.09001 * 110.84858 * 84.08537 * 7 6 4 9 9 N 1.46901 * 110.84702 * 207.69598 * 7 6 4 10 10 C 1.46895 * 111.00299 * 205.00146 * 9 7 6 11 11 C 1.53008 * 109.47213 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46905 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.46671 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.46698 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00266 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99687 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00176 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99882 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47017 * 60.00127 * 18 16 14 20 20 H 1.48504 * 109.47234 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47255 * 299.99909 * 18 16 14 22 22 C 1.54429 * 102.23000 * 325.92130 * 7 6 4 23 23 O 1.43234 * 107.60919 * 21.29662 * 22 7 6 24 24 H 1.08993 * 109.47555 * 60.00038 * 1 2 3 25 25 H 1.09006 * 109.47159 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47443 * 300.00153 * 1 2 3 27 27 H 1.08994 * 109.46705 * 239.99851 * 2 1 3 28 28 H 1.09004 * 109.46455 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47064 * 299.99511 * 3 2 1 30 30 H 1.08998 * 109.47170 * 60.00444 * 3 2 1 31 31 H 1.09002 * 111.12777 * 273.28398 * 6 4 2 32 32 H 1.08995 * 111.12300 * 37.40291 * 6 4 2 33 33 H 1.00905 * 111.00334 * 328.96255 * 9 7 6 34 34 H 1.09001 * 109.47340 * 300.00470 * 10 9 7 35 35 H 1.08997 * 109.47424 * 60.00364 * 10 9 7 36 36 H 1.08994 * 109.46863 * 299.99963 * 11 10 9 37 37 H 1.08993 * 109.46646 * 60.00125 * 11 10 9 38 38 H 1.09001 * 109.47513 * 300.00048 * 12 11 10 39 39 H 1.09006 * 109.46959 * 60.00064 * 12 11 10 40 40 H 1.09001 * 109.46760 * 299.99585 * 13 12 11 41 41 H 1.08997 * 109.47483 * 60.00084 * 13 12 11 42 42 H 0.96996 * 119.99778 * 180.02562 * 17 16 14 43 43 H 1.09007 * 109.79290 * 261.79697 * 22 7 6 44 44 H 1.08999 * 109.92783 * 140.87682 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6537 -1.7399 1.2831 6 6 3.5893 -0.7330 1.2686 7 6 3.8650 -0.8768 2.7902 8 1 3.8240 -1.9226 3.0947 9 7 5.1582 -0.2776 3.1460 10 6 5.7029 -0.8873 4.3665 11 6 7.0466 -0.2383 4.7048 12 6 7.6136 -0.8729 5.9763 13 6 8.9569 -0.2236 6.3149 14 6 9.5157 -0.8491 7.5670 15 1 8.9678 -1.6318 8.0706 16 6 10.7265 -0.4221 8.0696 17 7 11.3941 0.5307 7.4561 18 14 11.4196 -1.1979 9.6212 19 1 11.6154 -2.6535 9.4018 20 1 12.7234 -0.5676 9.9500 21 1 10.4713 -0.9897 10.7448 22 6 2.6984 -0.0778 3.4110 23 8 1.6556 -0.0022 2.4319 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.9825 -1.5861 0.7157 32 1 3.9941 0.2025 0.8827 33 1 5.8131 -0.3506 2.3819 34 1 5.0073 -0.7329 5.1914 35 1 5.8453 -1.9560 4.2064 36 1 7.7423 -0.3924 3.8800 37 1 6.9038 0.8303 4.8650 38 1 6.9177 -0.7186 6.8009 39 1 7.7562 -1.9417 5.8165 40 1 9.6530 -0.3777 5.4904 41 1 8.8139 0.8451 6.4749 42 1 12.2460 0.8307 7.8096 43 1 3.0353 0.9259 3.6706 44 1 2.3323 -0.5869 4.3025 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701170087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:15 Heat of formation + Delta-G solvation = -81.689485 kcal Electronic energy + Delta-G solvation = -18783.644971 eV Core-core repulsion = 15927.458204 eV Total energy + Delta-G solvation = -2856.186767 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.07443 -36.65995 -35.08793 -34.13669 -32.37248 -30.57760 -28.53190 -27.42398 -27.14612 -24.37256 -23.30754 -21.40059 -21.26362 -20.04608 -19.62250 -17.22419 -16.32540 -16.06863 -15.55054 -15.00150 -14.84265 -14.57747 -14.39380 -14.15671 -13.60391 -13.46601 -12.89135 -12.45198 -12.37588 -12.19701 -12.04444 -11.84381 -11.70308 -11.47998 -11.33015 -11.02527 -10.99222 -10.87069 -10.71906 -10.55339 -10.49273 -10.42580 -9.63527 -9.58512 -9.25913 -9.01225 -8.52266 -8.32024 -5.97280 -3.99647 3.34404 3.38618 3.41146 3.60014 4.01599 4.17909 4.47451 4.50319 4.68218 4.78452 4.83265 4.96488 5.12437 5.21515 5.36506 5.38163 5.39795 5.43806 5.47646 5.53115 5.60281 5.62517 5.72991 5.82108 5.82596 5.86153 5.88493 6.08261 6.13267 6.17048 6.25643 6.49490 6.80818 6.87743 6.94346 7.00009 7.20895 7.31020 7.70967 7.86913 8.03571 8.46244 9.07610 9.64113 11.14033 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.066241 B = 0.002626 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.598778 B =10660.019317 C =10823.629418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.147 4.147 4 C 0.088 3.912 5 H 0.067 0.933 6 C -0.161 4.161 7 C 0.053 3.947 8 H 0.059 0.941 9 N -0.678 5.678 10 C 0.058 3.942 11 C -0.116 4.116 12 C -0.109 4.109 13 C 0.021 3.979 14 C -0.521 4.521 15 H 0.053 0.947 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.059 3.941 23 O -0.375 6.375 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.344 0.656 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.014 0.986 41 H 0.016 0.984 42 H 0.261 0.739 43 H 0.083 0.917 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.657 -2.254 -15.852 25.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.204 4.204 4 C 0.030 3.970 5 H 0.085 0.915 6 C -0.198 4.198 7 C -0.058 4.058 8 H 0.077 0.923 9 N -0.310 5.310 10 C -0.071 4.071 11 C -0.153 4.153 12 C -0.147 4.147 13 C -0.016 4.016 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.018 4.018 23 O -0.294 6.294 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.163 0.837 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.101 0.899 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.973 -1.512 -15.476 25.312 hybrid contribution 1.040 -1.462 0.583 1.886 sum -18.933 -2.973 -14.893 24.272 Atomic orbital electron populations 1.21772 0.94706 1.01593 1.02088 1.21232 0.96568 0.97195 0.96227 1.21834 1.01006 0.95484 1.02080 1.22882 0.92889 0.95032 0.86211 0.91492 1.23605 0.96431 1.03924 0.95867 1.23063 0.91589 0.96822 0.94312 0.92277 1.60496 1.04167 1.58910 1.07469 1.22171 0.97410 0.95759 0.91732 1.21640 0.93810 1.00742 0.99153 1.21591 0.99500 0.99047 0.94564 1.19087 0.90363 0.95909 0.96220 1.21251 1.04549 1.20091 1.10038 0.92835 1.25037 0.97058 0.95161 0.97294 1.69958 1.14933 1.28701 1.39967 0.86665 0.78221 0.79463 0.83679 1.20298 1.21294 1.20244 1.23176 0.86378 1.01347 0.90909 1.88401 1.40994 1.74840 1.25194 0.92860 0.92993 0.91845 0.90452 0.92458 0.92995 0.91672 0.90248 0.88755 0.83726 0.91185 0.95393 0.92707 0.91566 0.93417 0.93696 0.96756 0.96585 0.92983 0.89929 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.09 37.16 0.34 -0.76 16 2 C -0.09 -0.73 2.86 -90.62 -0.26 -0.99 16 3 C -0.15 -1.21 8.76 37.16 0.33 -0.89 16 4 C 0.09 0.79 3.16 -25.71 -0.08 0.71 16 5 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 6 C -0.16 -1.39 5.85 -24.48 -0.14 -1.53 16 7 C 0.05 0.55 3.33 -65.74 -0.22 0.33 16 8 H 0.06 0.62 7.83 -51.93 -0.41 0.21 16 9 N -0.68 -8.09 6.33 -104.65 -0.66 -8.75 16 10 C 0.06 0.80 5.55 -3.82 -0.02 0.77 16 11 C -0.12 -1.94 5.48 -26.73 -0.15 -2.09 16 12 C -0.11 -2.25 5.15 -26.73 -0.14 -2.38 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 15 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 18 Si 0.89 21.92 29.54 -169.99 -5.02 16.89 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.06 0.66 7.56 37.91 0.29 0.95 16 23 O -0.38 -4.27 9.80 -35.23 -0.35 -4.62 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.56 7.84 -51.93 -0.41 0.15 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.47 6.14 -51.93 -0.32 0.15 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.63 7.61 -51.93 -0.40 0.24 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.84 5.89 -51.93 -0.31 0.53 16 33 H 0.34 3.79 8.43 -39.29 -0.33 3.46 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.03 0.38 8.09 -51.93 -0.42 -0.04 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.08 1.01 8.02 -51.92 -0.42 0.59 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 346.52 15.07 5.22 5.22 Total: -1.00 -30.29 346.52 -9.14 -39.43 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -8.46 Total: -2.29 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -0.61 Total: -19.27 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.07 Total: -35.37 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.35 Total: -4.62 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.29 -9.14 -39.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701170087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.258 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds