Wall clock time and date at job start Mon Mar 30 2020 06:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46707 * 2 1 4 4 C 1.52995 * 109.46967 * 119.99627 * 2 1 3 5 5 H 1.09007 * 110.35208 * 57.86071 * 4 2 1 6 6 C 1.54947 * 110.30771 * 179.97438 * 4 2 1 7 7 C 1.55306 * 100.97824 * 155.34129 * 6 4 2 8 8 H 1.09001 * 110.84858 * 84.08537 * 7 6 4 9 9 N 1.46901 * 110.84702 * 207.69598 * 7 6 4 10 10 C 1.46895 * 111.00299 * 205.00146 * 9 7 6 11 11 C 1.53008 * 109.47213 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46905 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.46671 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.46698 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00266 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99687 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00176 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99882 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47017 * 60.00127 * 18 16 14 20 20 H 1.48504 * 109.47234 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47255 * 299.99909 * 18 16 14 22 22 C 1.54429 * 102.23000 * 325.92130 * 7 6 4 23 23 O 1.43234 * 107.60919 * 21.29662 * 22 7 6 24 24 H 1.08993 * 109.47555 * 60.00038 * 1 2 3 25 25 H 1.09006 * 109.47159 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47443 * 300.00153 * 1 2 3 27 27 H 1.08994 * 109.46705 * 239.99851 * 2 1 3 28 28 H 1.09004 * 109.46455 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47064 * 299.99511 * 3 2 1 30 30 H 1.08998 * 109.47170 * 60.00444 * 3 2 1 31 31 H 1.09002 * 111.12777 * 273.28398 * 6 4 2 32 32 H 1.08995 * 111.12300 * 37.40291 * 6 4 2 33 33 H 1.00905 * 111.00334 * 328.96255 * 9 7 6 34 34 H 1.09001 * 109.47340 * 300.00470 * 10 9 7 35 35 H 1.08997 * 109.47424 * 60.00364 * 10 9 7 36 36 H 1.08994 * 109.46863 * 299.99963 * 11 10 9 37 37 H 1.08993 * 109.46646 * 60.00125 * 11 10 9 38 38 H 1.09001 * 109.47513 * 300.00048 * 12 11 10 39 39 H 1.09006 * 109.46959 * 60.00064 * 12 11 10 40 40 H 1.09001 * 109.46760 * 299.99585 * 13 12 11 41 41 H 1.08997 * 109.47483 * 60.00084 * 13 12 11 42 42 H 0.96996 * 119.99778 * 180.02562 * 17 16 14 43 43 H 1.09007 * 109.79290 * 261.79697 * 22 7 6 44 44 H 1.08999 * 109.92783 * 140.87682 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6537 -1.7399 1.2831 6 6 3.5893 -0.7330 1.2686 7 6 3.8650 -0.8768 2.7902 8 1 3.8240 -1.9226 3.0947 9 7 5.1582 -0.2776 3.1460 10 6 5.7029 -0.8873 4.3665 11 6 7.0466 -0.2383 4.7048 12 6 7.6136 -0.8729 5.9763 13 6 8.9569 -0.2236 6.3149 14 6 9.5157 -0.8491 7.5670 15 1 8.9678 -1.6318 8.0706 16 6 10.7265 -0.4221 8.0696 17 7 11.3941 0.5307 7.4561 18 14 11.4196 -1.1979 9.6212 19 1 11.6154 -2.6535 9.4018 20 1 12.7234 -0.5676 9.9500 21 1 10.4713 -0.9897 10.7448 22 6 2.6984 -0.0778 3.4110 23 8 1.6556 -0.0022 2.4319 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.9825 -1.5861 0.7157 32 1 3.9941 0.2025 0.8827 33 1 5.8131 -0.3506 2.3819 34 1 5.0073 -0.7329 5.1914 35 1 5.8453 -1.9560 4.2064 36 1 7.7423 -0.3924 3.8800 37 1 6.9038 0.8303 4.8650 38 1 6.9177 -0.7186 6.8009 39 1 7.7562 -1.9417 5.8165 40 1 9.6530 -0.3777 5.4904 41 1 8.8139 0.8451 6.4749 42 1 12.2460 0.8307 7.8096 43 1 3.0353 0.9259 3.6706 44 1 2.3323 -0.5869 4.3025 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701170087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:15 Heat of formation + Delta-G solvation = -100.019512 kcal Electronic energy + Delta-G solvation = -18784.439821 eV Core-core repulsion = 15927.458204 eV Total energy + Delta-G solvation = -2856.981616 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.85820 -37.78889 -36.11035 -35.54060 -34.15124 -31.79134 -29.72214 -28.47128 -28.00507 -26.06539 -24.17080 -22.86207 -22.22291 -21.54503 -20.39418 -18.43585 -18.01489 -17.01519 -16.65660 -16.52341 -15.88886 -15.73310 -15.51211 -15.00331 -14.65454 -14.45499 -14.22862 -14.00542 -13.61700 -13.38206 -13.01713 -12.86075 -12.75395 -12.70583 -12.56935 -12.33356 -12.27737 -12.13055 -12.10277 -11.65886 -11.54623 -11.42219 -11.37159 -11.30200 -10.96418 -10.55140 -10.39174 -9.47017 -8.20000 -6.31586 1.39287 1.42693 1.50652 2.40672 2.80324 3.12556 3.13650 3.42038 3.79967 3.99414 4.08154 4.10834 4.13524 4.20549 4.24686 4.38576 4.53805 4.56050 4.62184 4.74620 4.76404 4.81334 4.86128 4.88484 4.93356 4.95294 5.02252 5.10266 5.16118 5.22249 5.23624 5.28164 5.35702 5.46540 5.52770 5.54962 5.77824 5.86737 6.03199 6.11457 6.25511 6.40620 6.85912 7.37674 8.91649 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.066241 B = 0.002626 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.598778 B =10660.019317 C =10823.629418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.145 4.145 4 C 0.082 3.918 5 H 0.075 0.925 6 C -0.152 4.152 7 C 0.055 3.945 8 H 0.065 0.935 9 N -0.683 5.683 10 C 0.071 3.929 11 C -0.105 4.105 12 C -0.097 4.097 13 C 0.023 3.977 14 C -0.546 4.546 15 H 0.060 0.940 16 C -0.004 4.004 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.267 1.267 22 C 0.059 3.941 23 O -0.391 6.391 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.096 0.904 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.351 0.649 34 H 0.069 0.931 35 H 0.037 0.963 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.051 0.949 40 H -0.010 1.010 41 H -0.012 1.012 42 H 0.264 0.736 43 H 0.067 0.933 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.330 -3.744 -16.305 26.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.202 4.202 4 C 0.025 3.975 5 H 0.093 0.907 6 C -0.190 4.190 7 C -0.055 4.055 8 H 0.083 0.917 9 N -0.316 5.316 10 C -0.058 4.058 11 C -0.143 4.143 12 C -0.135 4.135 13 C -0.015 4.015 14 C -0.584 4.584 15 H 0.078 0.922 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.192 1.192 22 C -0.019 4.019 23 O -0.311 6.311 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.171 0.829 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.009 0.991 41 H 0.007 0.993 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.664 -3.008 -15.942 26.271 hybrid contribution 1.230 -0.954 0.682 1.699 sum -19.434 -3.961 -15.260 25.024 Atomic orbital electron populations 1.21754 0.94605 1.01929 1.01714 1.21277 0.96664 0.96834 0.96357 1.21810 1.00957 0.95871 1.01586 1.23075 0.93218 0.95370 0.85829 0.90684 1.23577 0.96142 1.04664 0.94607 1.23052 0.90216 0.96689 0.95590 0.91685 1.60388 1.04906 1.59143 1.07167 1.21925 0.95387 0.95879 0.92655 1.21458 0.95627 0.99957 0.97284 1.21397 0.96518 0.99065 0.96535 1.19023 0.92921 0.94648 0.94863 1.21722 1.05152 1.20467 1.11031 0.92193 1.26031 0.97469 0.95600 1.01009 1.70097 1.15416 1.30102 1.41844 0.85487 0.77501 0.78829 0.79146 1.19069 1.20802 1.19159 1.23123 0.86863 1.00623 0.91244 1.88394 1.41246 1.75392 1.26039 0.91821 0.92304 0.93631 0.88559 0.92473 0.91952 0.93682 0.88290 0.89008 0.82947 0.91296 0.94458 0.92577 0.92705 0.93190 0.93022 0.99148 0.99327 0.92766 0.91507 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.09 71.98 0.65 -1.30 16 2 C -0.09 -1.28 2.86 -10.79 -0.03 -1.31 16 3 C -0.15 -2.23 8.76 71.98 0.63 -1.60 16 4 C 0.08 1.34 3.16 31.26 0.10 1.44 16 5 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 6 C -0.15 -2.30 5.85 32.05 0.19 -2.12 16 7 C 0.05 1.05 3.33 46.19 0.15 1.20 16 8 H 0.07 1.21 7.83 -2.39 -0.02 1.19 16 9 N -0.68 -15.31 6.33 -484.99 -3.07 -18.38 16 10 C 0.07 1.83 5.55 86.31 0.48 2.31 16 11 C -0.11 -3.50 5.48 30.60 0.17 -3.33 16 12 C -0.10 -3.99 5.15 30.59 0.16 -3.83 16 13 C 0.02 1.22 4.97 29.85 0.15 1.37 16 14 C -0.55 -31.72 9.11 25.60 0.23 -31.49 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 17 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 18 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 22 C 0.06 1.29 7.56 72.47 0.55 1.83 16 23 O -0.39 -8.65 9.80 -148.98 -1.46 -10.11 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.04 0.78 7.84 -2.38 -0.02 0.76 16 27 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 0.87 6.14 -2.38 -0.01 0.85 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.04 0.87 7.61 -2.39 -0.02 0.85 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 1.46 5.89 -2.39 -0.01 1.45 16 33 H 0.35 7.10 8.43 -89.69 -0.76 6.34 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.04 0.92 8.09 -2.39 -0.02 0.90 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 40 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 41 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 42 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.07 1.65 8.02 -2.38 -0.02 1.63 16 44 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -65.22 346.52 1.85 -63.38 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.18 Total: 12.53 kcal Atomic # 6 Polarization: -40.46 SS G_CDS: 3.89 Total: -36.57 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -2.78 Total: -76.01 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -1.46 Total: -10.11 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -65.22 1.85 -63.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701170087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.644 kcal (2) G-P(sol) polarization free energy of solvation -65.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds