Wall clock time and date at job start Mon Mar 30 2020 06:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47474 * 2 1 4 4 C 1.52999 * 109.46807 * 120.00261 * 2 1 3 5 5 H 1.08999 * 109.87137 * 301.00567 * 4 2 1 6 6 C 1.54102 * 109.87760 * 179.97438 * 4 2 1 7 7 C 1.54805 * 104.19143 * 238.39347 * 6 4 2 8 8 H 1.09006 * 110.90820 * 97.35224 * 7 6 4 9 9 N 1.46899 * 110.91263 * 220.92224 * 7 6 4 10 10 C 1.46896 * 111.00129 * 202.07536 * 9 7 6 11 11 C 1.53005 * 109.47189 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47090 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46736 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47153 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 C 1.54994 * 102.12361 * 339.13982 * 7 6 4 23 23 O 1.43744 * 110.00361 * 62.09341 * 4 2 1 24 24 H 1.09003 * 109.46762 * 59.99781 * 1 2 3 25 25 H 1.08995 * 109.47583 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46917 * 300.00102 * 1 2 3 27 27 H 1.09001 * 109.46917 * 239.99898 * 2 1 3 28 28 H 1.09000 * 109.47326 * 179.97438 * 3 2 1 29 29 H 1.08990 * 109.47370 * 300.00198 * 3 2 1 30 30 H 1.09006 * 109.46671 * 60.00003 * 3 2 1 31 31 H 1.09006 * 110.48623 * 119.72047 * 6 4 2 32 32 H 1.08997 * 110.48928 * 357.07911 * 6 4 2 33 33 H 1.00905 * 110.99844 * 78.11817 * 9 7 6 34 34 H 1.08994 * 109.47695 * 60.00165 * 10 9 7 35 35 H 1.09001 * 109.46987 * 299.99679 * 10 9 7 36 36 H 1.09007 * 109.47086 * 59.99578 * 11 10 9 37 37 H 1.09001 * 109.46760 * 299.99655 * 11 10 9 38 38 H 1.08999 * 109.46983 * 60.00393 * 12 11 10 39 39 H 1.08993 * 109.47310 * 299.99833 * 12 11 10 40 40 H 1.09004 * 109.47178 * 60.00488 * 13 12 11 41 41 H 1.08993 * 109.47411 * 300.00171 * 13 12 11 42 42 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 43 43 H 1.09007 * 110.61902 * 155.50146 * 22 7 6 44 44 H 1.08994 * 110.62246 * 278.50133 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6655 -0.2231 2.1435 6 6 3.5809 -0.7274 1.2584 7 6 3.9542 -2.2291 1.3029 8 1 4.1804 -2.6034 0.3045 9 7 5.0816 -2.4623 2.2153 10 6 5.7710 -3.7180 1.8902 11 6 6.9360 -3.9262 2.8600 12 6 7.6536 -5.2344 2.5217 13 6 8.8189 -5.4423 3.4911 14 6 9.5255 -6.7312 3.1584 15 1 9.1783 -7.3408 2.3373 16 6 10.6150 -7.1321 3.9020 17 7 11.0410 -6.3870 4.8986 18 14 11.4912 -8.7293 3.4891 19 1 10.8780 -9.8429 4.2567 20 1 11.3644 -9.0018 2.0349 21 1 12.9275 -8.6131 3.8476 22 6 2.6554 -2.8713 1.8532 23 8 1.6077 -2.0922 1.2363 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 3.9591 -0.2139 2.1425 32 1 3.9697 -0.2642 0.3516 33 1 4.7759 -2.4561 3.1769 34 1 6.1514 -3.6701 0.8699 35 1 5.0720 -4.5497 1.9787 36 1 6.5552 -3.9743 3.8803 37 1 7.6351 -3.0946 2.7719 38 1 8.0343 -5.1867 1.5015 39 1 6.9543 -6.0658 2.6100 40 1 8.4386 -5.4899 4.5115 41 1 9.5181 -4.6109 3.4024 42 1 10.5862 -5.5575 5.1129 43 1 2.5859 -3.9163 1.5510 44 1 2.6124 -2.7809 2.9386 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701170088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:18 Heat of formation + Delta-G solvation = -87.916035 kcal Electronic energy + Delta-G solvation = -18730.877249 eV Core-core repulsion = 15874.420479 eV Total energy + Delta-G solvation = -2856.456770 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.14063 -36.74540 -35.34600 -34.36673 -32.50014 -30.53870 -28.48100 -27.42315 -26.82295 -23.98707 -23.26882 -21.65219 -21.46589 -20.36902 -20.08886 -16.93074 -16.60569 -16.32015 -15.87494 -15.40712 -14.63607 -14.28955 -13.96112 -13.71669 -13.61237 -13.39962 -13.13275 -12.94390 -12.58644 -12.50926 -12.22764 -12.08148 -11.72648 -11.44109 -11.24955 -11.09040 -10.98378 -10.85987 -10.83965 -10.60277 -10.58172 -10.10859 -9.92446 -9.77527 -9.62470 -8.49814 -8.47987 -8.29157 -6.33103 -4.01652 3.44578 3.46576 3.48677 3.64418 4.11280 4.34824 4.36051 4.57219 4.63035 4.68833 4.80196 4.89903 5.02898 5.12809 5.26002 5.32095 5.33889 5.41712 5.44160 5.46638 5.48015 5.53525 5.59466 5.70136 5.77392 5.78525 5.84902 5.98541 6.03409 6.05390 6.12294 6.37362 6.62048 6.67794 6.80834 6.90203 7.06999 7.24679 7.45895 7.59254 8.26572 8.50479 8.92530 9.70862 11.07697 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.063866 B = 0.002597 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.311043 B =10780.538602 C =10938.874654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.149 4.149 4 C 0.079 3.921 5 H 0.066 0.934 6 C -0.143 4.143 7 C 0.056 3.944 8 H 0.093 0.907 9 N -0.678 5.678 10 C 0.059 3.941 11 C -0.117 4.117 12 C -0.102 4.102 13 C 0.008 3.992 14 C -0.602 4.602 15 H 0.048 0.952 16 C 0.012 3.988 17 N -0.915 5.915 18 Si 1.072 2.928 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.284 1.284 22 C 0.018 3.982 23 O -0.371 6.371 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.342 0.658 34 H 0.071 0.929 35 H 0.029 0.971 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.005 0.995 41 H 0.007 0.993 42 H 0.269 0.731 43 H 0.091 0.909 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.144 13.814 -8.641 25.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.206 4.206 4 C 0.021 3.979 5 H 0.084 0.916 6 C -0.181 4.181 7 C -0.055 4.055 8 H 0.111 0.889 9 N -0.309 5.309 10 C -0.070 4.070 11 C -0.155 4.155 12 C -0.140 4.140 13 C -0.030 4.030 14 C -0.640 4.640 15 H 0.066 0.934 16 C -0.191 4.191 17 N -0.552 5.552 18 Si 0.900 3.100 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.210 1.210 22 C -0.061 4.061 23 O -0.289 6.289 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.160 0.840 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.023 0.977 41 H 0.025 0.975 42 H 0.079 0.921 43 H 0.109 0.891 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.645 13.155 -8.650 24.403 hybrid contribution -1.763 0.360 0.018 1.799 sum -20.407 13.515 -8.632 25.955 Atomic orbital electron populations 1.21770 0.94738 1.02286 1.01336 1.21256 0.96532 0.95910 0.97623 1.21870 1.01480 0.95205 1.02063 1.22834 0.93551 0.83587 0.97892 0.91622 1.23026 0.94439 0.96678 1.03960 1.23163 0.89207 0.95231 0.97878 0.88932 1.60523 1.26562 1.37004 1.06795 1.22123 0.95708 0.88600 1.00563 1.21662 0.96327 0.99652 0.97855 1.21454 0.98065 0.94193 1.00283 1.19225 0.92718 0.96974 0.94034 1.22115 1.16278 1.07335 1.18257 0.93393 1.25868 0.95687 1.03662 0.93914 1.70748 1.41907 1.14352 1.28169 0.83512 0.76365 0.74704 0.75418 1.21495 1.21518 1.20991 1.24344 0.87568 0.96766 0.97419 1.88867 1.41310 1.17720 1.81021 0.92854 0.92001 0.92908 0.90579 0.92058 0.92232 0.92533 0.89871 0.89932 0.83971 0.91054 0.95317 0.92761 0.91641 0.93238 0.93467 0.97661 0.97503 0.92090 0.89085 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.07 37.16 0.34 -0.77 16 2 C -0.09 -0.75 2.58 -90.62 -0.23 -0.98 16 3 C -0.15 -0.97 8.93 37.16 0.33 -0.63 16 4 C 0.08 0.72 2.97 -26.16 -0.08 0.64 16 5 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 6 C -0.14 -1.30 5.77 -25.20 -0.15 -1.44 16 7 C 0.06 0.58 3.42 -65.71 -0.22 0.36 16 8 H 0.09 1.00 7.87 -51.93 -0.41 0.60 16 9 N -0.68 -7.99 6.33 -104.61 -0.66 -8.65 16 10 C 0.06 0.80 5.56 -3.82 -0.02 0.78 16 11 C -0.12 -1.96 5.47 -26.73 -0.15 -2.11 16 12 C -0.10 -2.12 5.15 -26.73 -0.14 -2.25 16 13 C 0.01 0.20 4.28 -27.88 -0.12 0.08 16 14 C -0.60 -17.61 9.11 -34.44 -0.31 -17.92 16 15 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 16 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 17 N -0.92 -28.67 13.65 55.43 0.76 -27.92 16 18 Si 1.07 25.82 29.90 -169.99 -5.08 20.74 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.02 0.18 7.31 38.21 0.28 0.46 16 23 O -0.37 -4.14 10.64 -35.23 -0.37 -4.52 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.54 7.76 -51.93 -0.40 0.14 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.39 6.54 -51.93 -0.34 0.05 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.75 8.06 -51.93 -0.42 0.34 16 32 H 0.08 0.71 6.49 -51.93 -0.34 0.38 16 33 H 0.34 3.75 8.26 -39.29 -0.32 3.43 16 34 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 35 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.01 0.14 8.01 -51.93 -0.42 -0.28 16 41 H 0.01 0.18 8.00 -51.93 -0.42 -0.23 16 42 H 0.27 8.38 7.22 -40.82 -0.29 8.09 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.58 7.79 -51.93 -0.40 0.18 16 LS Contribution 346.49 15.07 5.22 5.22 Total: -1.00 -31.23 346.49 -9.17 -40.40 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -8.46 Total: -1.74 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -0.57 Total: -23.53 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.09 Total: -36.57 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.37 Total: -4.52 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.23 -9.17 -40.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701170088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.520 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds