Wall clock time and date at job start Mon Mar 30 2020 06:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47474 * 2 1 4 4 C 1.52999 * 109.46807 * 120.00261 * 2 1 3 5 5 H 1.08999 * 109.87137 * 301.00567 * 4 2 1 6 6 C 1.54102 * 109.87760 * 179.97438 * 4 2 1 7 7 C 1.54805 * 104.19143 * 238.39347 * 6 4 2 8 8 H 1.09006 * 110.90820 * 97.35224 * 7 6 4 9 9 N 1.46899 * 110.91263 * 220.92224 * 7 6 4 10 10 C 1.46896 * 111.00129 * 202.07536 * 9 7 6 11 11 C 1.53005 * 109.47189 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47090 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46736 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47153 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 C 1.54994 * 102.12361 * 339.13982 * 7 6 4 23 23 O 1.43744 * 110.00361 * 62.09341 * 4 2 1 24 24 H 1.09003 * 109.46762 * 59.99781 * 1 2 3 25 25 H 1.08995 * 109.47583 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46917 * 300.00102 * 1 2 3 27 27 H 1.09001 * 109.46917 * 239.99898 * 2 1 3 28 28 H 1.09000 * 109.47326 * 179.97438 * 3 2 1 29 29 H 1.08990 * 109.47370 * 300.00198 * 3 2 1 30 30 H 1.09006 * 109.46671 * 60.00003 * 3 2 1 31 31 H 1.09006 * 110.48623 * 119.72047 * 6 4 2 32 32 H 1.08997 * 110.48928 * 357.07911 * 6 4 2 33 33 H 1.00905 * 110.99844 * 78.11817 * 9 7 6 34 34 H 1.08994 * 109.47695 * 60.00165 * 10 9 7 35 35 H 1.09001 * 109.46987 * 299.99679 * 10 9 7 36 36 H 1.09007 * 109.47086 * 59.99578 * 11 10 9 37 37 H 1.09001 * 109.46760 * 299.99655 * 11 10 9 38 38 H 1.08999 * 109.46983 * 60.00393 * 12 11 10 39 39 H 1.08993 * 109.47310 * 299.99833 * 12 11 10 40 40 H 1.09004 * 109.47178 * 60.00488 * 13 12 11 41 41 H 1.08993 * 109.47411 * 300.00171 * 13 12 11 42 42 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 43 43 H 1.09007 * 110.61902 * 155.50146 * 22 7 6 44 44 H 1.08994 * 110.62246 * 278.50133 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6655 -0.2231 2.1435 6 6 3.5809 -0.7274 1.2584 7 6 3.9542 -2.2291 1.3029 8 1 4.1804 -2.6034 0.3045 9 7 5.0816 -2.4623 2.2153 10 6 5.7710 -3.7180 1.8902 11 6 6.9360 -3.9262 2.8600 12 6 7.6536 -5.2344 2.5217 13 6 8.8189 -5.4423 3.4911 14 6 9.5255 -6.7312 3.1584 15 1 9.1783 -7.3408 2.3373 16 6 10.6150 -7.1321 3.9020 17 7 11.0410 -6.3870 4.8986 18 14 11.4912 -8.7293 3.4891 19 1 10.8780 -9.8429 4.2567 20 1 11.3644 -9.0018 2.0349 21 1 12.9275 -8.6131 3.8476 22 6 2.6554 -2.8713 1.8532 23 8 1.6077 -2.0922 1.2363 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 3.9591 -0.2139 2.1425 32 1 3.9697 -0.2642 0.3516 33 1 4.7759 -2.4561 3.1769 34 1 6.1514 -3.6701 0.8699 35 1 5.0720 -4.5497 1.9787 36 1 6.5552 -3.9743 3.8803 37 1 7.6351 -3.0946 2.7719 38 1 8.0343 -5.1867 1.5015 39 1 6.9543 -6.0658 2.6100 40 1 8.4386 -5.4899 4.5115 41 1 9.5181 -4.6109 3.4024 42 1 10.5862 -5.5575 5.1129 43 1 2.5859 -3.9163 1.5510 44 1 2.6124 -2.7809 2.9386 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701170088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:17 Heat of formation + Delta-G solvation = -107.025372 kcal Electronic energy + Delta-G solvation = -18731.705892 eV Core-core repulsion = 15874.420479 eV Total energy + Delta-G solvation = -2857.285413 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.92024 -37.88757 -36.38804 -35.78938 -34.21616 -31.71870 -29.64403 -28.24209 -27.85088 -25.79045 -24.07929 -23.21246 -22.44602 -21.71291 -20.90074 -18.89335 -17.67134 -17.16719 -16.77671 -16.41935 -15.81137 -15.64175 -15.39909 -14.81340 -14.74828 -14.56204 -14.36486 -13.95034 -13.79948 -13.55450 -13.09840 -13.07065 -12.89776 -12.65227 -12.46349 -12.30914 -12.18516 -12.06144 -11.94476 -11.86584 -11.60349 -11.59236 -11.46976 -11.39658 -10.68258 -10.62817 -10.55458 -9.43306 -8.70443 -6.40798 1.51272 1.61012 1.78851 2.55792 2.67046 3.14485 3.22911 3.59003 3.64206 3.87464 3.96060 4.06249 4.11832 4.13484 4.20906 4.33321 4.42976 4.48809 4.49957 4.66127 4.68555 4.71226 4.75913 4.80461 4.81854 4.94737 4.96358 5.00247 5.07138 5.10324 5.17648 5.19776 5.23718 5.40836 5.44321 5.47215 5.56067 5.83756 5.99965 6.02678 6.18209 6.32992 6.57203 7.41814 8.70428 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.063866 B = 0.002597 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.311043 B =10780.538602 C =10938.874654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 C -0.145 4.145 4 C 0.078 3.922 5 H 0.069 0.931 6 C -0.137 4.137 7 C 0.058 3.942 8 H 0.089 0.911 9 N -0.679 5.679 10 C 0.070 3.930 11 C -0.106 4.106 12 C -0.091 4.091 13 C 0.006 3.994 14 C -0.621 4.621 15 H 0.050 0.950 16 C -0.043 4.043 17 N -0.939 5.939 18 Si 1.122 2.878 19 H -0.271 1.271 20 H -0.269 1.269 21 H -0.282 1.282 22 C 0.018 3.982 23 O -0.388 6.388 24 H 0.063 0.937 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.347 0.653 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.050 0.950 40 H -0.013 1.013 41 H -0.014 1.014 42 H 0.255 0.745 43 H 0.091 0.909 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.957 13.825 -9.580 26.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 C -0.203 4.203 4 C 0.021 3.979 5 H 0.087 0.913 6 C -0.175 4.175 7 C -0.053 4.053 8 H 0.107 0.893 9 N -0.311 5.311 10 C -0.059 4.059 11 C -0.144 4.144 12 C -0.129 4.129 13 C -0.031 4.031 14 C -0.659 4.659 15 H 0.069 0.931 16 C -0.240 4.240 17 N -0.577 5.577 18 Si 0.942 3.058 19 H -0.196 1.196 20 H -0.193 1.193 21 H -0.207 1.207 22 C -0.060 4.060 23 O -0.307 6.307 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.167 0.833 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.006 0.994 41 H 0.005 0.995 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.490 13.190 -9.594 25.414 hybrid contribution -1.544 0.402 0.322 1.627 sum -21.033 13.592 -9.273 26.704 Atomic orbital electron populations 1.21750 0.94593 1.01519 1.02084 1.21266 0.96666 0.96618 0.96723 1.21846 1.01516 0.94188 1.02718 1.22938 0.93504 0.82853 0.98654 0.91282 1.22987 0.94428 0.95723 1.04336 1.23148 0.88702 0.96183 0.97265 0.89305 1.60470 1.27342 1.35800 1.07487 1.21891 0.94740 0.89836 0.99403 1.21474 0.97042 0.96976 0.98895 1.21286 0.96395 0.96600 0.98652 1.19207 0.94158 0.95254 0.94496 1.22578 1.16666 1.08399 1.18223 0.93131 1.27528 0.96723 1.06607 0.93167 1.70889 1.42568 1.14526 1.29685 0.82888 0.75304 0.70986 0.76595 1.19648 1.19333 1.20735 1.24348 0.87208 0.96752 0.97695 1.88857 1.41856 1.18752 1.81208 0.91775 0.93486 0.92518 0.91263 0.91959 0.91402 0.92084 0.89675 0.89376 0.83345 0.91019 0.94553 0.92587 0.92481 0.93165 0.93092 0.99447 0.99523 0.93563 0.89029 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.07 71.98 0.65 -1.35 16 2 C -0.09 -1.36 2.58 -10.80 -0.03 -1.39 16 3 C -0.15 -1.61 8.93 71.98 0.64 -0.97 16 4 C 0.08 1.31 2.97 30.97 0.09 1.40 16 5 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 6 C -0.14 -2.26 5.77 31.58 0.18 -2.07 16 7 C 0.06 1.11 3.42 46.21 0.16 1.27 16 8 H 0.09 1.79 7.87 -2.38 -0.02 1.77 16 9 N -0.68 -14.89 6.33 -484.89 -3.07 -17.96 16 10 C 0.07 1.80 5.56 86.31 0.48 2.28 16 11 C -0.11 -3.47 5.47 30.59 0.17 -3.30 16 12 C -0.09 -3.76 5.15 30.59 0.16 -3.60 16 13 C 0.01 0.32 4.28 29.85 0.13 0.44 16 14 C -0.62 -36.50 9.11 25.60 0.23 -36.27 16 15 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 16 C -0.04 -2.58 5.46 84.65 0.46 -2.12 16 17 N -0.94 -59.69 13.65 21.45 0.29 -59.40 16 18 Si 1.12 51.14 29.90 68.60 2.05 53.19 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 C 0.02 0.35 7.31 72.66 0.53 0.88 16 23 O -0.39 -8.24 10.64 -148.98 -1.58 -9.83 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.05 0.80 7.76 -2.39 -0.02 0.78 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 0.68 6.54 -2.39 -0.02 0.67 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.08 1.39 8.06 -2.38 -0.02 1.37 16 32 H 0.09 1.37 6.49 -2.39 -0.02 1.35 16 33 H 0.35 7.03 8.26 -89.69 -0.74 6.29 16 34 H 0.07 1.86 8.08 -2.39 -0.02 1.84 16 35 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 1.80 8.14 -2.38 -0.02 1.79 16 37 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H -0.01 -0.72 8.01 -2.39 -0.02 -0.74 16 41 H -0.01 -0.77 8.00 -2.39 -0.02 -0.79 16 42 H 0.25 16.41 7.22 -92.71 -0.67 15.74 16 43 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.07 1.17 7.79 -2.39 -0.02 1.15 16 Total: -1.00 -66.53 346.49 1.84 -64.68 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.29 Total: 14.10 kcal Atomic # 6 Polarization: -48.65 SS G_CDS: 3.86 Total: -44.79 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -2.78 Total: -77.36 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -1.58 Total: -9.83 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 2.05 Total: 53.19 kcal Total: -66.53 1.84 -64.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701170088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.341 kcal (2) G-P(sol) polarization free energy of solvation -66.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds