Wall clock time and date at job start Mon Mar 30 2020 06:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46722 * 2 1 4 4 C 1.52994 * 109.47405 * 120.00189 * 2 1 3 5 5 H 1.08998 * 109.86651 * 59.55205 * 4 2 1 6 6 C 1.54097 * 110.00310 * 180.64108 * 4 2 1 7 7 C 1.54818 * 104.18808 * 121.52604 * 6 4 2 8 8 H 1.09001 * 110.90139 * 262.64748 * 7 6 4 9 9 N 1.46898 * 110.90782 * 139.07637 * 7 6 4 10 10 C 1.46901 * 110.99748 * 155.00010 * 9 7 6 11 11 C 1.52999 * 109.46870 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47146 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47119 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.46921 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00312 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00031 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99813 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47241 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46974 * 119.99904 * 18 16 14 21 21 H 1.48501 * 109.47070 * 239.99784 * 18 16 14 22 22 C 1.55000 * 102.09030 * 20.87976 * 7 6 4 23 23 O 1.43745 * 109.87784 * 298.54750 * 4 2 1 24 24 H 1.09003 * 109.47077 * 59.99611 * 1 2 3 25 25 H 1.08994 * 109.46928 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47000 * 300.00043 * 1 2 3 27 27 H 1.09003 * 109.46751 * 240.00705 * 2 1 3 28 28 H 1.08999 * 109.47084 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47662 * 300.00031 * 3 2 1 30 30 H 1.09003 * 109.47431 * 60.00231 * 3 2 1 31 31 H 1.09004 * 110.48577 * 240.19885 * 6 4 2 32 32 H 1.08997 * 110.49107 * 2.84776 * 6 4 2 33 33 H 1.00898 * 110.99878 * 278.95517 * 9 7 6 34 34 H 1.08997 * 109.47044 * 299.99970 * 10 9 7 35 35 H 1.08997 * 109.47191 * 60.00036 * 10 9 7 36 36 H 1.08997 * 109.47532 * 300.00001 * 11 10 9 37 37 H 1.09006 * 109.46794 * 60.00036 * 11 10 9 38 38 H 1.09007 * 109.47058 * 300.00401 * 12 11 10 39 39 H 1.08997 * 109.47024 * 60.00299 * 12 11 10 40 40 H 1.08997 * 109.47089 * 299.99748 * 13 12 11 41 41 H 1.08997 * 109.47385 * 59.99961 * 13 12 11 42 42 H 0.96996 * 119.99922 * 180.02562 * 17 16 14 43 43 H 1.08999 * 110.61711 * 204.48002 * 22 7 6 44 44 H 1.08997 * 110.62057 * 81.47966 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 1 1.6738 -1.7478 1.2597 6 6 3.5809 -0.7143 1.2696 7 6 3.9396 -0.0021 2.5966 8 1 4.1589 1.0518 2.4254 9 7 5.0676 -0.6686 3.2610 10 6 5.7859 0.2635 4.1404 11 6 6.9505 -0.4654 4.8135 12 6 7.6990 0.5055 5.7290 13 6 8.8641 -0.2232 6.4016 14 6 9.6009 0.7330 7.3038 15 1 9.2715 1.7580 7.3886 16 6 10.6957 0.2992 8.0210 17 7 11.0966 -0.9491 7.9181 18 14 11.6095 1.4846 9.1387 19 1 10.9630 2.8202 9.0781 20 1 11.5700 0.9790 10.5345 21 1 13.0215 1.5968 8.6926 22 6 2.6360 -0.1704 3.4181 23 8 1.5940 -0.0310 2.4285 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.9670 -1.7337 1.2673 32 1 3.9713 -0.1556 0.4191 33 1 4.7573 -1.4814 3.7719 34 1 6.1697 1.0962 3.5511 35 1 5.1049 0.6414 4.9029 36 1 6.5663 -1.2979 5.4028 37 1 7.6317 -0.8437 4.0511 38 1 8.0834 1.3379 5.1393 39 1 7.0182 0.8842 6.4913 40 1 8.4802 -1.0556 6.9912 41 1 9.5449 -0.6015 5.6391 42 1 11.8666 -1.2544 8.4229 43 1 2.5549 0.6110 4.1736 44 1 2.5977 -1.1572 3.8794 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701170091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:20 Heat of formation + Delta-G solvation = -82.290728 kcal Electronic energy + Delta-G solvation = -18829.715258 eV Core-core repulsion = 15973.502419 eV Total energy + Delta-G solvation = -2856.212838 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.17368 -36.66359 -35.07596 -34.12345 -32.36367 -30.57701 -28.57121 -27.43221 -26.97070 -24.26724 -23.44659 -21.52169 -21.18682 -20.11593 -19.93336 -16.57597 -16.45908 -16.12497 -15.98876 -15.19629 -14.54530 -14.44810 -14.24867 -14.01648 -13.91010 -13.19333 -12.88971 -12.62769 -12.37707 -12.25929 -12.09389 -11.84379 -11.65834 -11.52668 -11.28735 -11.07573 -11.00131 -10.82861 -10.78259 -10.57218 -10.47198 -10.41824 -9.86486 -9.63799 -9.26030 -8.99272 -8.43184 -8.32740 -5.97790 -3.99919 3.31877 3.39181 3.43452 3.53791 4.18986 4.37536 4.43032 4.48188 4.68003 4.74378 4.80417 4.91595 5.05766 5.21455 5.33626 5.37955 5.40987 5.46769 5.48242 5.52279 5.53706 5.62021 5.68405 5.77670 5.82907 5.85949 5.88449 6.08130 6.12994 6.14531 6.22728 6.49309 6.66417 6.81106 6.94700 7.00514 7.21095 7.31254 7.71385 7.86756 8.03332 8.46157 9.07845 9.63994 11.13613 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.062477 B = 0.002646 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.054479 B =10580.490336 C =10663.965777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.147 4.147 4 C 0.079 3.921 5 H 0.065 0.935 6 C -0.144 4.144 7 C 0.058 3.942 8 H 0.091 0.909 9 N -0.678 5.678 10 C 0.058 3.942 11 C -0.116 4.116 12 C -0.109 4.109 13 C 0.020 3.980 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.018 3.982 23 O -0.368 6.368 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.342 0.658 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.014 0.986 41 H 0.016 0.984 42 H 0.259 0.741 43 H 0.090 0.910 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.982 0.700 -15.425 25.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.204 4.204 4 C 0.021 3.979 5 H 0.083 0.917 6 C -0.182 4.182 7 C -0.053 4.053 8 H 0.109 0.891 9 N -0.309 5.309 10 C -0.070 4.070 11 C -0.154 4.154 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.060 4.060 23 O -0.286 6.286 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.160 0.840 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.623 0.791 -15.871 25.250 hybrid contribution 0.175 0.479 1.439 1.527 sum -19.448 1.271 -14.432 24.251 Atomic orbital electron populations 1.21766 0.94795 1.01599 1.01989 1.21285 0.96488 0.97098 0.96372 1.21826 1.01056 0.95583 1.01976 1.22807 0.93484 0.95380 0.86254 0.91687 1.23028 0.94407 1.02516 0.98293 1.23141 0.89228 0.99107 0.93836 0.89053 1.60524 1.25319 1.09518 1.35582 1.22146 0.95549 0.95319 0.94006 1.21647 0.96110 0.98858 0.98786 1.21588 0.98340 0.97689 0.97071 1.19097 0.91922 0.95514 0.95129 1.21327 1.12319 0.96858 1.25254 0.92722 1.25043 0.97356 0.95142 0.97067 1.69977 1.26124 1.15306 1.42153 0.86554 0.79705 0.81299 0.80544 1.19771 1.21044 1.21013 1.24324 0.87689 1.01526 0.92499 1.88861 1.41019 1.75751 1.22975 0.92902 0.92979 0.91932 0.90353 0.92473 0.92947 0.91921 0.89926 0.89926 0.83955 0.91137 0.95397 0.92712 0.91605 0.93428 0.93660 0.96735 0.96600 0.93101 0.89164 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.07 37.16 0.34 -0.76 16 2 C -0.09 -0.74 2.72 -90.62 -0.25 -0.99 16 3 C -0.15 -1.19 8.77 37.16 0.33 -0.86 16 4 C 0.08 0.71 3.15 -26.16 -0.08 0.62 16 5 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 6 C -0.14 -1.31 5.90 -25.20 -0.15 -1.46 16 7 C 0.06 0.60 3.46 -65.70 -0.23 0.37 16 8 H 0.09 0.98 7.83 -51.93 -0.41 0.58 16 9 N -0.68 -8.00 6.35 -104.61 -0.66 -8.66 16 10 C 0.06 0.79 5.55 -3.82 -0.02 0.77 16 11 C -0.12 -1.94 5.47 -26.73 -0.15 -2.09 16 12 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 13 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 14 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 18 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 C 0.02 0.18 7.30 38.21 0.28 0.46 16 23 O -0.37 -3.98 9.89 -35.23 -0.35 -4.33 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.55 7.74 -51.93 -0.40 0.15 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.46 6.38 -51.93 -0.33 0.13 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 31 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 32 H 0.08 0.72 6.21 -51.93 -0.32 0.40 16 33 H 0.34 3.76 8.20 -39.29 -0.32 3.44 16 34 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.57 7.77 -51.93 -0.40 0.17 16 LS Contribution 346.30 15.07 5.22 5.22 Total: -1.00 -30.28 346.30 -9.16 -39.44 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -8.46 Total: -2.27 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -0.62 Total: -19.68 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.07 Total: -35.24 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.35 Total: -4.33 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.28 -9.16 -39.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701170091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.855 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds