Wall clock time and date at job start Mon Mar 30 2020 06:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46722 * 2 1 4 4 C 1.52994 * 109.47405 * 120.00189 * 2 1 3 5 5 H 1.08998 * 109.86651 * 59.55205 * 4 2 1 6 6 C 1.54097 * 110.00310 * 180.64108 * 4 2 1 7 7 C 1.54818 * 104.18808 * 121.52604 * 6 4 2 8 8 H 1.09001 * 110.90139 * 262.64748 * 7 6 4 9 9 N 1.46898 * 110.90782 * 139.07637 * 7 6 4 10 10 C 1.46901 * 110.99748 * 155.00010 * 9 7 6 11 11 C 1.52999 * 109.46870 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47146 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47119 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.46921 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00312 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00031 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99813 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47241 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46974 * 119.99904 * 18 16 14 21 21 H 1.48501 * 109.47070 * 239.99784 * 18 16 14 22 22 C 1.55000 * 102.09030 * 20.87976 * 7 6 4 23 23 O 1.43745 * 109.87784 * 298.54750 * 4 2 1 24 24 H 1.09003 * 109.47077 * 59.99611 * 1 2 3 25 25 H 1.08994 * 109.46928 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47000 * 300.00043 * 1 2 3 27 27 H 1.09003 * 109.46751 * 240.00705 * 2 1 3 28 28 H 1.08999 * 109.47084 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47662 * 300.00031 * 3 2 1 30 30 H 1.09003 * 109.47431 * 60.00231 * 3 2 1 31 31 H 1.09004 * 110.48577 * 240.19885 * 6 4 2 32 32 H 1.08997 * 110.49107 * 2.84776 * 6 4 2 33 33 H 1.00898 * 110.99878 * 278.95517 * 9 7 6 34 34 H 1.08997 * 109.47044 * 299.99970 * 10 9 7 35 35 H 1.08997 * 109.47191 * 60.00036 * 10 9 7 36 36 H 1.08997 * 109.47532 * 300.00001 * 11 10 9 37 37 H 1.09006 * 109.46794 * 60.00036 * 11 10 9 38 38 H 1.09007 * 109.47058 * 300.00401 * 12 11 10 39 39 H 1.08997 * 109.47024 * 60.00299 * 12 11 10 40 40 H 1.08997 * 109.47089 * 299.99748 * 13 12 11 41 41 H 1.08997 * 109.47385 * 59.99961 * 13 12 11 42 42 H 0.96996 * 119.99922 * 180.02562 * 17 16 14 43 43 H 1.08999 * 110.61711 * 204.48002 * 22 7 6 44 44 H 1.08997 * 110.62057 * 81.47966 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 1 1.6738 -1.7478 1.2597 6 6 3.5809 -0.7143 1.2696 7 6 3.9396 -0.0021 2.5966 8 1 4.1589 1.0518 2.4254 9 7 5.0676 -0.6686 3.2610 10 6 5.7859 0.2635 4.1404 11 6 6.9505 -0.4654 4.8135 12 6 7.6990 0.5055 5.7290 13 6 8.8641 -0.2232 6.4016 14 6 9.6009 0.7330 7.3038 15 1 9.2715 1.7580 7.3886 16 6 10.6957 0.2992 8.0210 17 7 11.0966 -0.9491 7.9181 18 14 11.6095 1.4846 9.1387 19 1 10.9630 2.8202 9.0781 20 1 11.5700 0.9790 10.5345 21 1 13.0215 1.5968 8.6926 22 6 2.6360 -0.1704 3.4181 23 8 1.5940 -0.0310 2.4285 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.9670 -1.7337 1.2673 32 1 3.9713 -0.1556 0.4191 33 1 4.7573 -1.4814 3.7719 34 1 6.1697 1.0962 3.5511 35 1 5.1049 0.6414 4.9029 36 1 6.5663 -1.2979 5.4028 37 1 7.6317 -0.8437 4.0511 38 1 8.0834 1.3379 5.1393 39 1 7.0182 0.8842 6.4913 40 1 8.4802 -1.0556 6.9912 41 1 9.5449 -0.6015 5.6391 42 1 11.8666 -1.2544 8.4229 43 1 2.5549 0.6110 4.1736 44 1 2.5977 -1.1572 3.8794 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701170091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:20 Heat of formation + Delta-G solvation = -100.488572 kcal Electronic energy + Delta-G solvation = -18830.504375 eV Core-core repulsion = 15973.502419 eV Total energy + Delta-G solvation = -2857.001956 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94018 -37.78001 -36.11075 -35.50277 -34.13730 -31.77441 -29.78089 -28.34717 -27.92872 -25.96163 -24.22847 -22.97429 -22.23370 -21.46243 -20.78034 -18.44691 -17.35091 -17.24073 -16.79944 -16.50473 -16.34678 -15.41952 -15.17656 -14.86631 -14.82918 -14.43011 -14.19746 -13.95842 -13.62088 -13.24040 -13.17268 -12.96969 -12.83692 -12.77045 -12.58025 -12.26053 -12.19826 -12.12771 -12.08601 -11.67047 -11.54168 -11.49799 -11.36422 -11.28622 -10.95581 -10.60881 -10.56129 -9.36887 -8.20290 -6.31549 1.39492 1.39780 1.53317 2.40587 2.74452 3.12511 3.31355 3.62794 3.71538 3.93465 4.02932 4.11262 4.16424 4.20832 4.25548 4.33376 4.53157 4.55983 4.61164 4.72552 4.77922 4.81210 4.83746 4.87535 4.92940 4.97757 5.02531 5.10455 5.17238 5.23121 5.24739 5.28644 5.36379 5.45653 5.50387 5.55561 5.78318 5.86793 5.89884 6.09048 6.25802 6.39222 6.86409 7.37802 8.91785 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.062477 B = 0.002646 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.054479 B =10580.490336 C =10663.965777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 C -0.145 4.145 4 C 0.077 3.923 5 H 0.069 0.931 6 C -0.139 4.139 7 C 0.060 3.940 8 H 0.088 0.912 9 N -0.681 5.681 10 C 0.070 3.930 11 C -0.106 4.106 12 C -0.097 4.097 13 C 0.022 3.978 14 C -0.543 4.543 15 H 0.060 0.940 16 C -0.004 4.004 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.262 1.262 20 H -0.278 1.278 21 H -0.278 1.278 22 C 0.019 3.981 23 O -0.383 6.383 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.347 0.653 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.050 0.950 40 H -0.010 1.010 41 H -0.011 1.011 42 H 0.263 0.737 43 H 0.091 0.909 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.663 1.590 -15.892 26.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 C -0.202 4.202 4 C 0.020 3.980 5 H 0.087 0.913 6 C -0.177 4.177 7 C -0.051 4.051 8 H 0.106 0.894 9 N -0.313 5.313 10 C -0.059 4.059 11 C -0.144 4.144 12 C -0.135 4.135 13 C -0.015 4.015 14 C -0.581 4.581 15 H 0.078 0.922 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.059 4.059 23 O -0.301 6.301 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.166 0.834 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.008 0.992 41 H 0.007 0.993 42 H 0.072 0.928 43 H 0.109 0.891 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.323 1.683 -16.350 26.138 hybrid contribution 0.373 0.158 1.561 1.612 sum -19.950 1.841 -14.790 24.902 Atomic orbital electron populations 1.21741 0.94645 1.01824 1.01724 1.21331 0.96619 0.96956 0.96354 1.21799 1.00981 0.95713 1.01709 1.22907 0.93321 0.95649 0.86155 0.91274 1.22988 0.94524 1.02426 0.97737 1.23118 0.88723 0.98901 0.94316 0.89425 1.60470 1.26133 1.09447 1.35203 1.21907 0.94582 0.95074 0.94290 1.21465 0.96805 0.98176 0.97932 1.21396 0.96668 0.97908 0.97546 1.19032 0.93322 0.94973 0.94194 1.21777 1.12982 0.97484 1.25882 0.92222 1.26029 0.98368 0.97018 0.98733 1.70108 1.26793 1.17367 1.43226 0.85383 0.78225 0.79117 0.78218 1.18555 1.20317 1.20323 1.24318 0.87328 1.01857 0.92409 1.88856 1.41457 1.76127 1.23682 0.91862 0.92525 0.93481 0.88905 0.92513 0.91969 0.93421 0.89877 0.89405 0.83372 0.91055 0.94602 0.92691 0.92593 0.93121 0.93087 0.99175 0.99254 0.92779 0.89126 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.07 71.98 0.65 -1.31 16 2 C -0.09 -1.32 2.72 -10.79 -0.03 -1.35 16 3 C -0.14 -2.13 8.77 71.98 0.63 -1.50 16 4 C 0.08 1.27 3.15 30.96 0.10 1.37 16 5 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 6 C -0.14 -2.30 5.90 31.59 0.19 -2.11 16 7 C 0.06 1.15 3.46 46.22 0.16 1.31 16 8 H 0.09 1.76 7.83 -2.39 -0.02 1.74 16 9 N -0.68 -15.04 6.35 -484.87 -3.08 -18.11 16 10 C 0.07 1.81 5.55 86.30 0.48 2.29 16 11 C -0.11 -3.49 5.47 30.60 0.17 -3.32 16 12 C -0.10 -3.97 5.15 30.59 0.16 -3.81 16 13 C 0.02 1.18 4.97 29.85 0.15 1.33 16 14 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 16 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 17 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 18 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 19 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 C 0.02 0.36 7.30 72.67 0.53 0.89 16 23 O -0.38 -7.86 9.89 -148.98 -1.47 -9.34 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.79 7.74 -2.39 -0.02 0.78 16 27 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 0.83 6.38 -2.39 -0.02 0.81 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.84 7.66 -2.39 -0.02 0.82 16 31 H 0.08 1.38 8.06 -2.39 -0.02 1.36 16 32 H 0.09 1.37 6.21 -2.39 -0.01 1.36 16 33 H 0.35 7.12 8.20 -89.70 -0.74 6.38 16 34 H 0.07 1.85 8.08 -2.39 -0.02 1.83 16 35 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.05 2.02 8.14 -2.38 -0.02 2.01 16 39 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 40 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 41 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 42 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 43 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.07 1.15 7.77 -2.39 -0.02 1.13 16 Total: -1.00 -64.55 346.30 1.83 -62.71 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.20 Total: 12.76 kcal Atomic # 6 Polarization: -41.16 SS G_CDS: 3.88 Total: -37.29 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -2.79 Total: -75.64 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -1.47 Total: -9.34 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -64.55 1.83 -62.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701170091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.777 kcal (2) G-P(sol) polarization free energy of solvation -64.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds