Wall clock time and date at job start Mon Mar 30 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47199 * 2 1 4 4 C 1.53003 * 109.47282 * 119.99746 * 2 1 3 5 5 H 1.08989 * 109.82635 * 300.88643 * 4 2 1 6 6 C 1.54385 * 109.82810 * 179.97438 * 4 2 1 7 7 C 1.55307 * 102.25218 * 219.12948 * 6 4 2 8 8 H 1.08994 * 111.12860 * 276.17630 * 7 6 4 9 9 N 1.46907 * 111.12316 * 152.05347 * 7 6 4 10 10 C 1.46902 * 110.99665 * 158.49717 * 9 7 6 11 11 C 1.53001 * 109.46901 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46756 * 59.99920 * 18 16 14 20 20 H 1.48490 * 109.47381 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47117 * 300.00527 * 18 16 14 22 22 C 1.54952 * 100.97819 * 34.11752 * 7 6 4 23 23 O 1.43230 * 109.82896 * 61.87049 * 4 2 1 24 24 H 1.08998 * 109.47334 * 299.99500 * 1 2 3 25 25 H 1.08999 * 109.47415 * 60.00050 * 1 2 3 26 26 H 1.08998 * 109.47108 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47681 * 240.00162 * 2 1 3 28 28 H 1.09009 * 109.47238 * 59.99875 * 3 2 1 29 29 H 1.09002 * 109.47536 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47298 * 299.99994 * 3 2 1 31 31 H 1.09002 * 110.84635 * 100.94317 * 6 4 2 32 32 H 1.08998 * 111.02458 * 337.40244 * 6 4 2 33 33 H 1.00898 * 110.99982 * 282.45148 * 9 7 6 34 34 H 1.09001 * 109.46712 * 60.00151 * 10 9 7 35 35 H 1.09002 * 109.47411 * 300.00262 * 10 9 7 36 36 H 1.09001 * 109.46652 * 60.00371 * 11 10 9 37 37 H 1.08992 * 109.47514 * 300.00460 * 11 10 9 38 38 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 39 39 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 40 40 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 41 41 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 42 42 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 43 43 H 1.08998 * 110.31175 * 82.49200 * 22 7 6 44 44 H 1.09002 * 110.30532 * 204.65860 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6670 -0.2211 2.1430 6 6 3.5838 -0.7266 1.2573 7 6 3.9057 -2.1457 1.7999 8 1 3.8765 -2.1657 2.8893 9 7 5.2020 -2.6224 1.2994 10 6 5.7438 -3.6790 2.1643 11 6 7.0908 -4.1495 1.6118 12 6 7.6548 -5.2504 2.5122 13 6 9.0021 -5.7204 1.9601 14 6 9.5574 -6.8052 2.8465 15 1 9.0045 -7.1275 3.7165 16 6 10.7709 -7.3870 2.5464 17 7 11.4439 -6.9949 1.4867 18 14 11.4596 -8.7312 3.6456 19 1 10.5127 -9.8746 3.6818 20 1 12.7665 -9.1883 3.1090 21 1 11.6466 -8.1997 5.0196 22 6 2.7379 -2.9649 1.1947 23 8 1.6030 -2.0852 1.2353 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 3.9709 0.0417 1.9266 32 1 3.9805 -0.5970 0.2503 33 1 5.1263 -2.9399 0.3447 34 1 5.0492 -4.5186 2.1908 35 1 5.8806 -3.2886 3.1727 36 1 7.7856 -3.3100 1.5849 37 1 6.9536 -4.5400 0.6035 38 1 7.7920 -4.8603 3.5207 39 1 6.9599 -6.0898 2.5386 40 1 8.8653 -6.1104 0.9514 41 1 9.6969 -4.8810 1.9338 42 1 12.2975 -7.4045 1.2754 43 1 2.9641 -3.2426 0.1653 44 1 2.5495 -3.8551 1.7949 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701170093.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:23 Heat of formation + Delta-G solvation = -85.219878 kcal Electronic energy + Delta-G solvation = -18709.282486 eV Core-core repulsion = 15852.942630 eV Total energy + Delta-G solvation = -2856.339856 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.13011 -36.68218 -35.23957 -34.15338 -32.37262 -30.60314 -28.60488 -27.42198 -26.99440 -24.25370 -23.21181 -21.56304 -21.27217 -20.24341 -19.90370 -17.22743 -16.31893 -16.14528 -15.57027 -15.13886 -14.78090 -14.46297 -14.11977 -14.05034 -13.69478 -13.17867 -12.92193 -12.53482 -12.48378 -12.44299 -12.26712 -11.82345 -11.66169 -11.65384 -11.30127 -11.14063 -11.04660 -10.97361 -10.74384 -10.57256 -10.50989 -10.42593 -9.69326 -9.63435 -9.26062 -9.01424 -8.46248 -8.32034 -5.97390 -3.99730 3.34404 3.38640 3.41139 3.47548 4.09982 4.32942 4.46820 4.50687 4.61179 4.72315 4.82944 4.89797 5.06175 5.16971 5.32868 5.35228 5.37474 5.38136 5.48143 5.49722 5.54044 5.57223 5.64319 5.74221 5.81048 5.84334 5.86973 6.03628 6.07589 6.13580 6.22564 6.48774 6.77631 6.80634 6.93437 6.98762 7.20443 7.29229 7.70888 7.86740 8.03473 8.46173 9.07550 9.64035 11.13923 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.063870 B = 0.002602 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.284354 B =10760.391202 C =10966.915331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C -0.148 4.148 4 C 0.083 3.917 5 H 0.079 0.921 6 C -0.139 4.139 7 C 0.055 3.945 8 H 0.094 0.906 9 N -0.676 5.676 10 C 0.058 3.942 11 C -0.116 4.116 12 C -0.109 4.109 13 C 0.021 3.979 14 C -0.521 4.521 15 H 0.053 0.947 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.022 3.978 23 O -0.375 6.375 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.342 0.658 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.014 0.986 41 H 0.016 0.984 42 H 0.261 0.739 43 H 0.059 0.941 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.294 14.922 -2.426 25.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.205 4.205 4 C 0.025 3.975 5 H 0.096 0.904 6 C -0.177 4.177 7 C -0.057 4.057 8 H 0.112 0.888 9 N -0.307 5.307 10 C -0.071 4.071 11 C -0.154 4.154 12 C -0.147 4.147 13 C -0.016 4.016 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.057 4.057 23 O -0.294 6.294 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.161 0.839 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.979 15.329 -2.213 25.279 hybrid contribution 0.125 -1.501 0.286 1.533 sum -19.854 13.828 -1.927 24.271 Atomic orbital electron populations 1.21751 0.94775 1.02236 1.01250 1.21473 0.96633 0.96184 0.98156 1.21836 1.01427 0.95335 1.01946 1.22822 0.93643 0.83320 0.97704 0.90358 1.23146 0.94162 0.97353 1.03063 1.23305 0.88016 0.94117 1.00219 0.88803 1.60490 1.23545 1.40274 1.06357 1.22153 0.96480 0.91447 0.96982 1.21645 0.94708 0.99460 0.99587 1.21589 0.99440 0.95718 0.97950 1.19085 0.90408 0.95923 0.96169 1.21250 1.04320 1.19767 1.10591 0.92829 1.25038 0.97043 0.97145 0.95328 1.69961 1.14677 1.42693 1.26236 0.86662 0.78188 0.82280 0.80887 1.20286 1.21299 1.20253 1.24167 0.86884 0.94200 1.00440 1.88412 1.30231 1.15414 1.95318 0.92922 0.92981 0.92031 0.90916 0.92584 0.92152 0.92407 0.89817 0.89863 0.83873 0.95339 0.91091 0.91583 0.92697 0.93422 0.93651 0.96744 0.96606 0.92986 0.92244 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.07 37.15 0.34 -0.78 16 2 C -0.11 -0.85 2.57 -90.62 -0.23 -1.08 16 3 C -0.15 -0.98 8.95 37.16 0.33 -0.65 16 4 C 0.08 0.75 3.09 -26.00 -0.08 0.67 16 5 H 0.08 0.67 8.14 -51.94 -0.42 0.25 16 6 C -0.14 -1.24 5.16 -24.78 -0.13 -1.37 16 7 C 0.05 0.56 3.39 -65.46 -0.22 0.34 16 8 H 0.09 0.99 7.88 -51.93 -0.41 0.58 16 9 N -0.68 -7.95 6.40 -104.35 -0.67 -8.62 16 10 C 0.06 0.78 5.57 -3.82 -0.02 0.76 16 11 C -0.12 -1.94 5.47 -26.73 -0.15 -2.09 16 12 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 13 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 14 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 18 Si 0.89 21.90 29.54 -169.99 -5.02 16.87 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.02 0.22 7.40 38.19 0.28 0.51 16 23 O -0.38 -4.19 10.44 -35.23 -0.37 -4.56 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.55 7.75 -51.93 -0.40 0.15 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 29 H 0.06 0.40 7.03 -51.93 -0.37 0.03 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.75 7.55 -51.93 -0.39 0.36 16 33 H 0.34 3.79 8.24 -39.29 -0.32 3.47 16 34 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.06 0.59 7.76 -51.93 -0.40 0.19 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 348.84 15.07 5.26 5.26 Total: -1.00 -30.29 348.84 -9.23 -39.52 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -8.60 Total: -2.45 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -0.57 Total: -19.44 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.07 Total: -35.21 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -0.37 Total: -4.56 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.29 -9.23 -39.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701170093.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.699 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds