Wall clock time and date at job start Mon Mar 30 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47199 * 2 1 4 4 C 1.53003 * 109.47282 * 119.99746 * 2 1 3 5 5 H 1.08989 * 109.82635 * 300.88643 * 4 2 1 6 6 C 1.54385 * 109.82810 * 179.97438 * 4 2 1 7 7 C 1.55307 * 102.25218 * 219.12948 * 6 4 2 8 8 H 1.08994 * 111.12860 * 276.17630 * 7 6 4 9 9 N 1.46907 * 111.12316 * 152.05347 * 7 6 4 10 10 C 1.46902 * 110.99665 * 158.49717 * 9 7 6 11 11 C 1.53001 * 109.46901 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46756 * 59.99920 * 18 16 14 20 20 H 1.48490 * 109.47381 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47117 * 300.00527 * 18 16 14 22 22 C 1.54952 * 100.97819 * 34.11752 * 7 6 4 23 23 O 1.43230 * 109.82896 * 61.87049 * 4 2 1 24 24 H 1.08998 * 109.47334 * 299.99500 * 1 2 3 25 25 H 1.08999 * 109.47415 * 60.00050 * 1 2 3 26 26 H 1.08998 * 109.47108 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47681 * 240.00162 * 2 1 3 28 28 H 1.09009 * 109.47238 * 59.99875 * 3 2 1 29 29 H 1.09002 * 109.47536 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47298 * 299.99994 * 3 2 1 31 31 H 1.09002 * 110.84635 * 100.94317 * 6 4 2 32 32 H 1.08998 * 111.02458 * 337.40244 * 6 4 2 33 33 H 1.00898 * 110.99982 * 282.45148 * 9 7 6 34 34 H 1.09001 * 109.46712 * 60.00151 * 10 9 7 35 35 H 1.09002 * 109.47411 * 300.00262 * 10 9 7 36 36 H 1.09001 * 109.46652 * 60.00371 * 11 10 9 37 37 H 1.08992 * 109.47514 * 300.00460 * 11 10 9 38 38 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 39 39 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 40 40 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 41 41 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 42 42 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 43 43 H 1.08998 * 110.31175 * 82.49200 * 22 7 6 44 44 H 1.09002 * 110.30532 * 204.65860 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6670 -0.2211 2.1430 6 6 3.5838 -0.7266 1.2573 7 6 3.9057 -2.1457 1.7999 8 1 3.8765 -2.1657 2.8893 9 7 5.2020 -2.6224 1.2994 10 6 5.7438 -3.6790 2.1643 11 6 7.0908 -4.1495 1.6118 12 6 7.6548 -5.2504 2.5122 13 6 9.0021 -5.7204 1.9601 14 6 9.5574 -6.8052 2.8465 15 1 9.0045 -7.1275 3.7165 16 6 10.7709 -7.3870 2.5464 17 7 11.4439 -6.9949 1.4867 18 14 11.4596 -8.7312 3.6456 19 1 10.5127 -9.8746 3.6818 20 1 12.7665 -9.1883 3.1090 21 1 11.6466 -8.1997 5.0196 22 6 2.7379 -2.9649 1.1947 23 8 1.6030 -2.0852 1.2353 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 3.9709 0.0417 1.9266 32 1 3.9805 -0.5970 0.2503 33 1 5.1263 -2.9399 0.3447 34 1 5.0492 -4.5186 2.1908 35 1 5.8806 -3.2886 3.1727 36 1 7.7856 -3.3100 1.5849 37 1 6.9536 -4.5400 0.6035 38 1 7.7920 -4.8603 3.5207 39 1 6.9599 -6.0898 2.5386 40 1 8.8653 -6.1104 0.9514 41 1 9.6969 -4.8810 1.9338 42 1 12.2975 -7.4045 1.2754 43 1 2.9641 -3.2426 0.1653 44 1 2.5495 -3.8551 1.7949 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701170093.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:23 Heat of formation + Delta-G solvation = -103.478829 kcal Electronic energy + Delta-G solvation = -18710.074253 eV Core-core repulsion = 15852.942630 eV Total energy + Delta-G solvation = -2857.131623 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.90640 -37.78861 -36.17625 -35.61971 -34.14918 -31.79963 -29.80528 -28.39103 -27.86042 -25.96655 -23.96844 -22.97798 -22.31279 -21.52081 -20.85555 -18.44957 -17.98802 -17.07299 -16.68234 -16.52202 -15.90793 -15.83187 -15.03261 -14.96003 -14.57917 -14.41602 -14.23692 -13.74983 -13.69885 -13.24160 -13.14929 -13.06603 -12.95275 -12.81080 -12.61119 -12.34914 -12.22205 -12.15810 -12.07229 -11.76862 -11.70282 -11.46199 -11.37234 -11.29709 -10.96320 -10.54801 -10.44555 -9.40117 -8.19785 -6.31280 1.39544 1.42879 1.50866 2.40888 2.67963 3.12828 3.24688 3.56641 3.76887 3.84446 4.04126 4.11033 4.16020 4.18976 4.24398 4.39690 4.50618 4.53649 4.61132 4.71188 4.72113 4.78904 4.81909 4.86592 4.92525 4.99943 5.02049 5.04121 5.18633 5.24260 5.25434 5.28792 5.36272 5.44049 5.46462 5.55312 5.78385 5.87099 5.97488 6.08348 6.25850 6.36613 6.86313 7.37973 8.91863 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.063870 B = 0.002602 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.284354 B =10760.391202 C =10966.915331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.145 4.145 4 C 0.081 3.919 5 H 0.084 0.916 6 C -0.132 4.132 7 C 0.056 3.944 8 H 0.094 0.906 9 N -0.678 5.678 10 C 0.070 3.930 11 C -0.106 4.106 12 C -0.097 4.097 13 C 0.022 3.978 14 C -0.546 4.546 15 H 0.060 0.940 16 C -0.004 4.004 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.266 1.266 22 C 0.023 3.977 23 O -0.392 6.392 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.347 0.653 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.050 0.950 40 H -0.011 1.011 41 H -0.011 1.011 42 H 0.264 0.736 43 H 0.061 0.939 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.179 15.181 -1.542 26.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.202 4.202 4 C 0.024 3.976 5 H 0.102 0.898 6 C -0.170 4.170 7 C -0.055 4.055 8 H 0.112 0.888 9 N -0.309 5.309 10 C -0.059 4.059 11 C -0.144 4.144 12 C -0.135 4.135 13 C -0.015 4.015 14 C -0.584 4.584 15 H 0.078 0.922 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.191 1.191 22 C -0.056 4.056 23 O -0.311 6.311 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.166 0.834 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.008 0.992 41 H 0.007 0.993 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.885 15.600 -1.327 26.102 hybrid contribution 0.388 -1.551 -0.029 1.600 sum -20.497 14.049 -1.357 24.886 Atomic orbital electron populations 1.21732 0.94659 1.01466 1.01981 1.21462 0.96726 0.96874 0.97267 1.21810 1.01439 0.94352 1.02594 1.22934 0.93650 0.82555 0.98463 0.89804 1.23107 0.94103 0.96677 1.03143 1.23301 0.87107 0.94834 1.00211 0.88807 1.60437 1.24588 1.39508 1.06409 1.21919 0.94691 0.92241 0.97057 1.21464 0.96283 0.97778 0.98873 1.21395 0.96504 0.97111 0.98506 1.19023 0.92961 0.94535 0.94951 1.21724 1.04928 1.20540 1.11165 0.92186 1.26030 0.97445 0.99791 0.96842 1.70100 1.15158 1.44154 1.28060 0.85487 0.77500 0.79041 0.78948 1.19123 1.20817 1.19111 1.24154 0.86691 0.94159 1.00562 1.88398 1.30858 1.16440 1.95436 0.92416 0.92049 0.93512 0.91759 0.91954 0.92092 0.91770 0.88987 0.89898 0.83382 0.94584 0.90857 0.92539 0.92753 0.93059 0.93091 0.99223 0.99260 0.92775 0.92077 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.07 71.98 0.65 -1.38 16 2 C -0.10 -1.53 2.57 -10.80 -0.03 -1.56 16 3 C -0.14 -1.65 8.95 71.98 0.64 -1.01 16 4 C 0.08 1.35 3.09 31.07 0.10 1.45 16 5 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 6 C -0.13 -2.14 5.16 31.86 0.16 -1.98 16 7 C 0.06 1.07 3.39 46.37 0.16 1.22 16 8 H 0.09 1.80 7.88 -2.39 -0.02 1.78 16 9 N -0.68 -14.93 6.40 -484.04 -3.10 -18.03 16 10 C 0.07 1.78 5.57 86.30 0.48 2.26 16 11 C -0.11 -3.49 5.47 30.59 0.17 -3.32 16 12 C -0.10 -3.96 5.15 30.59 0.16 -3.80 16 13 C 0.02 1.21 4.97 29.85 0.15 1.35 16 14 C -0.55 -31.64 9.11 25.60 0.23 -31.41 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 16 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 17 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 18 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 C 0.02 0.44 7.40 72.65 0.54 0.98 16 23 O -0.39 -8.35 10.44 -148.98 -1.56 -9.90 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.81 7.75 -2.39 -0.02 0.79 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.06 0.69 7.03 -2.39 -0.02 0.68 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.36 7.55 -2.39 -0.02 1.35 16 33 H 0.35 7.19 8.24 -89.70 -0.74 6.45 16 34 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 1.86 8.09 -2.39 -0.02 1.84 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 40 H -0.01 -0.62 8.14 -2.39 -0.02 -0.63 16 41 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 42 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 43 H 0.06 1.15 7.76 -2.39 -0.02 1.13 16 44 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -64.58 348.84 1.72 -62.87 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.19 Total: 12.83 kcal Atomic # 6 Polarization: -40.81 SS G_CDS: 3.87 Total: -36.94 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -2.81 Total: -75.59 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -1.56 Total: -9.90 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -64.58 1.72 -62.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701170093.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.612 kcal (2) G-P(sol) polarization free energy of solvation -64.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds