Wall clock time and date at job start Mon Mar 30 2020 07:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47024 * 2 1 4 4 H 1.08996 * 108.98953 * 56.04722 * 3 2 1 5 5 C 1.54509 * 109.05831 * 297.08735 * 3 2 1 6 6 C 1.50455 * 108.85484 * 162.26299 * 5 3 2 7 7 C 1.54293 * 113.03382 * 92.15540 * 6 5 3 8 8 C 1.54069 * 112.28784 * 318.30295 * 7 6 5 9 9 N 1.44271 * 111.98558 * 318.91765 * 8 7 6 10 10 C 1.46903 * 111.00195 * 219.31149 * 9 8 7 11 11 C 1.53003 * 109.46656 * 301.03427 * 10 9 8 12 12 O 1.42894 * 109.47215 * 67.03090 * 11 10 9 13 13 C 1.42906 * 113.99817 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47011 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00047 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00015 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99796 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99902 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46912 * 90.00330 * 18 16 14 20 20 H 1.48502 * 109.47240 * 210.00136 * 18 16 14 21 21 H 1.48496 * 109.47186 * 330.00288 * 18 16 14 22 22 C 1.45869 * 109.05261 * 175.00285 * 3 2 1 23 23 H 1.08998 * 109.47363 * 59.99706 * 1 2 3 24 24 H 1.08998 * 109.46618 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46781 * 299.99835 * 1 2 3 26 26 H 1.09006 * 109.46882 * 240.00438 * 2 1 3 27 27 H 1.08998 * 109.47363 * 120.00293 * 2 1 3 28 28 H 1.09003 * 109.57530 * 282.07809 * 5 3 2 29 29 H 1.09006 * 109.56920 * 42.32751 * 5 3 2 30 30 H 1.08992 * 108.77325 * 213.07305 * 6 5 3 31 31 H 1.08997 * 108.76992 * 331.35989 * 6 5 3 32 32 H 1.09004 * 108.91950 * 79.02505 * 7 6 5 33 33 H 1.08999 * 108.92133 * 197.67590 * 7 6 5 34 34 H 1.09002 * 108.98178 * 198.27175 * 8 7 6 35 35 H 1.09004 * 108.97794 * 79.55946 * 8 7 6 36 36 H 1.08999 * 109.46959 * 61.02649 * 10 9 8 37 37 H 1.08996 * 109.47429 * 181.03535 * 10 9 8 38 38 H 1.08997 * 109.46703 * 187.03345 * 11 10 9 39 39 H 1.09004 * 109.47039 * 307.03167 * 11 10 9 40 40 H 1.08999 * 109.46791 * 299.99819 * 13 12 11 41 41 H 1.08998 * 109.47329 * 60.00165 * 13 12 11 42 42 H 0.97007 * 119.99335 * 179.97438 * 17 16 14 43 43 H 1.09000 * 108.79179 * 60.98707 * 22 3 2 44 44 H 1.08995 * 108.70598 * 302.69091 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6155 1.9688 0.8549 5 6 1.5812 2.1399 -1.3002 6 6 1.6901 3.6293 -1.1176 7 6 3.0469 4.1971 -1.5838 8 6 4.2292 3.3011 -1.1678 9 7 4.0751 2.7915 0.1731 10 6 5.3598 2.7867 0.8854 11 6 6.3634 1.9207 0.1212 12 8 6.6732 2.5409 -1.1283 13 6 7.6070 1.8087 -1.9248 14 6 7.8596 2.5508 -3.2119 15 1 7.3571 3.4875 -3.4028 16 6 8.7315 2.0333 -4.1462 17 7 8.9524 2.6811 -5.2693 18 14 9.6001 0.4128 -3.8164 19 1 8.7727 -0.7066 -4.3338 20 1 10.9190 0.4101 -4.4989 21 1 9.7992 0.2465 -2.3542 22 6 3.4937 1.4336 0.1201 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.2179 1.8258 -2.1273 29 1 0.5466 1.8708 -1.5133 30 1 0.8944 4.1114 -1.6855 31 1 1.5580 3.8638 -0.0614 32 1 3.0375 4.2881 -2.6700 33 1 3.1846 5.1865 -1.1477 34 1 5.1503 3.8814 -1.2227 35 1 4.2989 2.4620 -1.8601 36 1 5.7396 3.8059 0.9565 37 1 5.2184 2.3808 1.8871 38 1 7.2744 1.8149 0.7102 39 1 5.9308 0.9365 -0.0590 40 1 8.5439 1.7002 -1.3784 41 1 7.1998 0.8225 -2.1475 42 1 9.5661 2.3171 -5.9264 43 1 3.9135 0.9050 -0.7357 44 1 3.7660 0.8994 1.0303 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703643976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:27 Heat of formation + Delta-G solvation = -60.257836 kcal Electronic energy + Delta-G solvation = -20326.412321 eV Core-core repulsion = 17471.154900 eV Total energy + Delta-G solvation = -2855.257421 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.65517 -37.14701 -35.14009 -33.54915 -32.59910 -30.11239 -29.37914 -27.69327 -25.79123 -24.40985 -23.04097 -21.88546 -21.24406 -19.89606 -19.09767 -16.87450 -16.15263 -15.88698 -15.28451 -14.98169 -14.68961 -14.39026 -14.25766 -13.71869 -13.43067 -13.31058 -12.89833 -12.62149 -12.42797 -12.12484 -11.99202 -11.74466 -11.54973 -11.21328 -11.05649 -10.96376 -10.84518 -10.74556 -10.50230 -10.31200 -10.25959 -10.11425 -9.91184 -9.75979 -9.20098 -8.89693 -8.52269 -7.91252 -6.15085 -4.14229 3.21151 3.28574 3.29742 4.13159 4.32051 4.62582 4.72179 4.97784 5.02443 5.16387 5.17588 5.29409 5.37683 5.42862 5.50753 5.55856 5.63554 5.69700 5.72768 5.79790 5.85081 5.89005 5.91255 5.98891 6.03631 6.11915 6.14645 6.22883 6.27881 6.42874 6.47757 6.50773 6.54736 6.63240 6.66634 6.83551 6.95222 7.43860 7.52943 7.56717 7.95649 8.61187 8.95707 9.44345 10.97829 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023432 B = 0.005162 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.670077 B = 5422.519536 C = 5536.709170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.079 4.079 4 H 0.072 0.928 5 C -0.114 4.114 6 C -0.106 4.106 7 C -0.111 4.111 8 C 0.057 3.943 9 N -0.524 5.524 10 C 0.060 3.940 11 C 0.020 3.980 12 O -0.374 6.374 13 C 0.167 3.833 14 C -0.518 4.518 15 H 0.082 0.918 16 C 0.073 3.927 17 N -0.894 5.894 18 Si 0.875 3.125 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.267 1.267 22 C 0.056 3.944 23 H 0.058 0.942 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.037 0.963 40 H 0.001 0.999 41 H -0.005 1.005 42 H 0.266 0.734 43 H 0.039 0.961 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.352 -3.554 12.120 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.098 4.098 4 H 0.091 0.909 5 C -0.151 4.151 6 C -0.144 4.144 7 C -0.149 4.149 8 C -0.071 4.071 9 N -0.246 5.246 10 C -0.068 4.068 11 C -0.060 4.060 12 O -0.293 6.293 13 C 0.092 3.908 14 C -0.556 4.556 15 H 0.101 0.899 16 C -0.129 4.129 17 N -0.533 5.533 18 Si 0.701 3.299 19 H -0.200 1.200 20 H -0.207 1.207 21 H -0.192 1.192 22 C -0.072 4.072 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.019 0.981 41 H 0.013 0.987 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.639 -3.053 12.140 19.262 hybrid contribution 1.351 -1.766 -0.348 2.251 sum -13.288 -4.819 11.792 18.408 Atomic orbital electron populations 1.21822 0.95941 1.01144 1.01936 1.21597 0.95918 0.96628 1.01808 1.20172 0.95535 0.95388 0.98708 0.90928 1.21477 1.00688 0.95696 0.97273 1.21159 0.96703 0.95164 1.01391 1.21991 0.94222 0.98885 0.99801 1.21998 0.98075 0.99191 0.87879 1.61760 1.23510 1.21138 1.18172 1.22381 0.87383 1.00917 0.96108 1.23121 0.98060 0.96567 0.88212 1.87990 1.64209 1.48788 1.28325 1.20598 0.87079 0.91917 0.91204 1.20865 1.26384 1.09260 0.99044 0.89948 1.24758 0.96115 0.97257 0.94735 1.69877 1.36328 1.38955 1.08101 0.86873 0.79659 0.84420 0.78916 1.19992 1.20724 1.19213 1.21046 0.95244 0.90188 1.00703 0.92291 0.93181 0.92892 0.92073 0.92287 0.92007 0.92045 0.93581 0.91985 0.92448 0.92633 0.89188 0.93606 0.89900 0.90281 0.94191 0.94458 0.98112 0.98747 0.92355 0.94298 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.67 37.16 0.36 -0.96 16 2 C -0.12 -1.22 5.34 -26.73 -0.14 -1.37 16 3 C -0.08 -0.92 1.94 -93.20 -0.18 -1.10 16 4 H 0.07 0.85 7.59 -51.93 -0.39 0.45 16 5 C -0.11 -1.38 4.89 -27.21 -0.13 -1.52 16 6 C -0.11 -1.34 5.42 -27.33 -0.15 -1.49 16 7 C -0.11 -1.62 6.15 -25.50 -0.16 -1.78 16 8 C 0.06 0.96 3.62 -4.67 -0.02 0.95 16 9 N -0.52 -7.74 4.45 -239.55 -1.07 -8.80 16 10 C 0.06 0.87 5.66 -3.82 -0.02 0.85 16 11 C 0.02 0.34 5.82 37.16 0.22 0.56 16 12 O -0.37 -8.35 7.02 -35.23 -0.25 -8.60 16 13 C 0.17 4.21 4.76 36.01 0.17 4.38 16 14 C -0.52 -15.21 9.99 -34.44 -0.34 -15.55 16 15 H 0.08 2.64 8.06 -52.49 -0.42 2.22 16 16 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 17 N -0.89 -27.48 13.96 55.43 0.77 -26.71 16 18 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 22 C 0.06 0.75 3.07 -6.70 -0.02 0.73 16 23 H 0.06 0.52 6.16 -51.93 -0.32 0.20 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 28 H 0.06 0.86 7.15 -51.93 -0.37 0.49 16 29 H 0.06 0.66 5.85 -51.93 -0.30 0.35 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.79 7.38 -51.93 -0.38 0.40 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.77 5.85 -51.93 -0.30 1.47 16 35 H 0.05 0.88 6.33 -51.93 -0.33 0.55 16 36 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 37 H 0.08 0.94 7.97 -51.93 -0.41 0.53 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.63 6.75 -51.93 -0.35 0.28 16 40 H 0.00 0.03 7.20 -51.93 -0.37 -0.34 16 41 H -0.01 -0.13 7.57 -51.93 -0.39 -0.52 16 42 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.04 0.60 6.72 -51.93 -0.35 0.25 16 44 H 0.06 0.73 7.63 -51.93 -0.40 0.33 16 LS Contribution 325.12 15.07 4.90 4.90 Total: -1.00 -30.05 325.12 -8.89 -38.95 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -8.07 Total: -2.26 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -0.52 Total: -14.25 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.29 Total: -35.51 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.25 Total: -8.60 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.05 -8.89 -38.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703643976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.311 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds